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foam-extend4.1-coherent-io/applications/utilities/mesh/conversion/gambitToFoam/gambitToFoam.L
2018-06-01 18:11:37 +02:00

874 lines
22 KiB
C++

/*--------------------------------*- C++ -*----------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.1
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
gambitToFoam
Description
Converts a GAMBIT mesh to FOAM format.
\*---------------------------------------------------------------------------*/
%{
#undef yyFlexLexer
/* ------------------------------------------------------------------------- *\
------ local definitions
\* ------------------------------------------------------------------------- */
#include "scalarList.H"
#include "IStringStream.H"
// For EOF only
#include <cstdio>
using namespace Foam;
#include "argList.H"
#include "objectRegistry.H"
#include "foamTime.H"
#include "polyMesh.H"
#include "emptyPolyPatch.H"
#include "preservePatchTypes.H"
#include "cellModeller.H"
#include "cellShape.H"
#include "SLList.H"
#include "SLPtrList.H"
label nPoints = 0;
label nCells = 0;
label nCellStreams = 0;
label nPatches = 0;
label nCoordDirections = 0;
label nVectorComponents = 0;
pointField points(0);
labelList pointMap(0);
PtrList<labelList> cellLabels(0);
labelList cellMap(0);
labelList cellTypes(0);
labelList cellStreamIDs(0);
wordList patchNames(0);
labelListList patchCells(0);
labelListList patchCellFaces(0);
label nValuesForPatchFaces = 0;
// Dummy yywrap to keep yylex happy at compile time.
// It is called by yylex but is not used as the mechanism to change file.
// See <<EOF>>
#if YY_FLEX_MINOR_VERSION < 6 && YY_FLEX_SUBMINOR_VERSION < 34
extern "C" int yywrap()
#else
int yyFlexLexer::yywrap()
#endif
{
return 1;
}
%}
one_space [ \t\f\r]
space {one_space}*
some_space {one_space}+
spaceNl ({space}|\n)*
alpha [_[:alpha:]]
digit [[:digit:]]
dotColonDash [.:-]
label [0-9]{digit}*
zeroLabel {digit}*
word ({alpha}|{digit}|{dotColonDash})*
exponent_part [eE][-+]?{digit}+
fractional_constant [-+]?(({digit}*"."{digit}+)|({digit}+"."?))
floatNum ((({fractional_constant}{exponent_part}?)|({digit}+{exponent_part}))|0)
x {floatNum}
y {floatNum}
z {floatNum}
labelListElement {space}{zeroLabel}
scalarListElement {space}{floatNum}
labelList ({labelListElement}+{space})
scalarList ({scalarListElement}+{space})
starStar ("**")
text ({space}({word}*{space})*\n)
dateDDMMYYYY ({digit}{digit}"/"{digit}{digit}"/"{digit}{digit}{digit}{digit})
dateDDMonYYYY ((({digit}{digit}{space})|({digit}{space})){alpha}*{space}{digit}{digit}{digit}{digit})
time ({digit}{digit}":"{digit}{digit}":"{digit}{digit})
versionNumber ({digit}|".")*
controlInfo ^{space}"CONTROL INFO"{space}{versionNumber}
applicationData ^{space}"APPLICATION DATA"{space}{versionNumber}
nodalCoords ^{space}"NODAL COORDINATES"{space}{versionNumber}
cellsAndElements ^{space}"ELEMENTS/CELLS"{space}{versionNumber}
cellStreams ^{space}"ELEMENT GROUP"{space}{versionNumber}
boundaryPatch ^{space}"BOUNDARY CONDITIONS"{space}{versionNumber}
faceConnectivity ^{space}"FACE CONNECTIVITY"{space}{versionNumber}
endOfSection ^{space}"ENDOFSECTION"{space}
program {space}"PROGRAM:"{space}
version {space}"VERSION:"{space}
group {space}"GROUP:"{space}
elements {space}"ELEMENTS:"{space}
material {space}"MATERIAL:"{space}
nFlags {space}"NFLAGS:"{space}
mtype {space}"MTYPE:"{space}
/* ------------------------------------------------------------------------- *\
----- Exclusive start states -----
\* ------------------------------------------------------------------------- */
%option stack
%x controlInfo
%x readControlHeader
%x readTitle
%x readProgramID
%x readVersionID
%x applicationData
%x nodalCoords
%x cellsAndElements
%x cellStreams
%x cellStreamTitle
%x cellStreamFlags
%x cellStreamLabels
%x readCellStreamGroupID
%x readCellStreamNElements
%x readCellStreamMaterial
%x readCellStreamNFlags
%x boundaryPatch
%x boundaryPatchParams
%x boundaryPatchFaces
%x faceConnectivity
%x globalMeshData
%x cellContLine
%%
%{
label nCellContinuationLines = 0;
label curNumberOfNodes = 0;
label curNumberOfCells = 0;
label curGroupID = 0;
label nFlagsForStream = 0;
label curBoundaryPatch = 0;
label curPatchFace = 0;
%}
/* ------------------------------------------------------------------------- *\
------ Start Lexing ------
\* ------------------------------------------------------------------------- */
/* ------ Reading control header ------ */
{controlInfo} {
BEGIN(readControlHeader);
}
<readControlHeader>{starStar}{space}{text} {
BEGIN(readTitle);
}
<readTitle>{text} {
Info << "Title: " << YYText();
BEGIN(controlInfo);
}
<controlInfo>{spaceNl}{program} {
BEGIN(readProgramID);
}
<readProgramID>{space}{word} {
Info<< "Written by " << YYText() << " ";
BEGIN(controlInfo);
}
<controlInfo>{spaceNl}{version} {
BEGIN(readVersionID);
}
<readVersionID>{space}{versionNumber} {
Info<< " version " << YYText() << endl;
BEGIN(controlInfo);
}
<controlInfo>{space}{dateDDMonYYYY}{space}{time} {
Info<< "File written on " << YYText() << endl;
}
<controlInfo>{space}{dateDDMMYYYY}{space}{time} {
Info<< "File written on " << YYText() << endl;
}
<controlInfo>{spaceNl}"NUMNP"{space}"NELEM"{space}"NGRPS"{space}"NBSETS"{space}("NDFCD"|"NDCFD"){space}"NDFVL"{space}\n {
BEGIN(globalMeshData);
}
<globalMeshData>{spaceNl}{label}{space}{label}{space}{label}{space}{label}{space}{label}{space}{label}{space}\n {
IStringStream nodeStream(YYText());
nPoints = readLabel(nodeStream);
nCells = readLabel(nodeStream);
nCellStreams = readLabel(nodeStream);
nPatches = readLabel(nodeStream);
nCoordDirections = readLabel(nodeStream);
nVectorComponents = readLabel(nodeStream);
// reset list sizes - now known!
points.setSize(nPoints);
pointMap.setSize(nPoints);
cellLabels.setSize(nCells);
cellMap.setSize(nCells);
cellTypes.setSize(nCells);
cellStreamIDs.setSize(nCells);
patchNames.setSize(nPatches);
patchCells.setSize(nPatches);
patchCellFaces.setSize(nPatches);
Info<< " number of points: " << nPoints << endl
<< " number of cells: " << nCells << endl
<< " number of patches: " << nPatches << endl;
BEGIN(controlInfo);
}
/* ------ Reading nodal coordinates ------ */
{nodalCoords}{spaceNl} {
curNumberOfNodes = 0;
Info<< "Reading nodal coordinates" << endl;
BEGIN(nodalCoords);
}
<nodalCoords>{spaceNl}{label}{space}{x}{space}{y}{space}{z}{space}\n {
IStringStream nodeStream(YYText());
label nodeI(readLabel(nodeStream));
// Note: coordinates must be read one at the time.
scalar x = readScalar(nodeStream);
scalar y = readScalar(nodeStream);
scalar z = readScalar(nodeStream);
// add mapping and scalced node to the list
pointMap[curNumberOfNodes] = nodeI;
points[curNumberOfNodes] = point(x, y, z);
curNumberOfNodes++;
}
/* ------ Reading cells and elements ------ */
{cellsAndElements}{spaceNl} {
curNumberOfCells = 0;
Info<< "Reading cells" << endl;
BEGIN(cellsAndElements);
}
<cellsAndElements>{spaceNl}{label}{space}{label}{space}{label}{labelList} {
IStringStream elementStream(YYText());
label cellI(readLabel(elementStream));
label cellType(readLabel(elementStream));
label nVertices(readLabel(elementStream));
// reset number of continuation lines
nCellContinuationLines = 0;
cellMap[curNumberOfCells] = cellI;
cellTypes[curNumberOfCells] = cellType;
cellLabels.set(curNumberOfCells, new labelList(nVertices));
labelList& curLabels = cellLabels[curNumberOfCells];
// Find out how many labels are expected. If less or equal to
// seven, read them all and finish with it. If there is more,
// set read of the next line
label labelsToRead = min(8, nVertices);
label labelI = 0;
for (; labelI < labelsToRead; labelI++)
{
if (elementStream.eof()) break;
// Check token to avoid trailing space.
token curLabelTok(elementStream);
if (curLabelTok.isLabel())
{
curLabels[labelI] = curLabelTok.labelToken();
}
else
{
break;
}
}
if (labelI < nVertices)
{
BEGIN(cellContLine);
}
else
{
curNumberOfCells++;
}
}
<cellContLine>{spaceNl}{labelList} {
IStringStream elementStream(YYText());
nCellContinuationLines++;
labelList& curLabels = cellLabels[curNumberOfCells];
label labelsToRead = min
(
(nCellContinuationLines + 1)*7,
curLabels.size()
);
for
(
label labelI = nCellContinuationLines*7;
labelI < labelsToRead;
labelI++
)
{
curLabels[labelI] = readLabel(elementStream);
}
// if read is finished, go back to reading cells
if (curLabels.size() < (nCellContinuationLines + 1)*7)
{
curNumberOfCells++;
BEGIN(cellsAndElements);
}
}
/* ------ Reading element group information ------ */
{cellStreams}{spaceNl} {
Info<< "Reading cell streams" << endl;
BEGIN(cellStreams);
}
<cellStreams>{spaceNl}{group} {
BEGIN(readCellStreamGroupID);
}
<readCellStreamGroupID>{space}{label} {
IStringStream groupStream(YYText());
if (curGroupID > 0)
{
FatalErrorIn("gambitToFoam::main")
<< "<readCellStreamGroupID>{space}{label} : "
<< "trying to reset group ID while active"
<< abort(FatalError);
}
else
{
curGroupID = readLabel(groupStream);
}
BEGIN(cellStreams);
}
<cellStreams>{spaceNl}{elements} {
BEGIN(readCellStreamNElements);
}
<readCellStreamNElements>{space}{label} {
IStringStream nElementsStream(YYText());
readLabel(nElementsStream);
BEGIN(cellStreams);
}
<cellStreams>{spaceNl}{material} {
BEGIN(readCellStreamMaterial);
}
<readCellStreamMaterial>{space}{label} {
IStringStream materialIDstream(YYText());
readLabel(materialIDstream);
BEGIN(cellStreams);
}
<cellStreams>{spaceNl}{nFlags} {
BEGIN(readCellStreamNFlags);
}
<readCellStreamNFlags>{space}{label} {
IStringStream nFlagsStream(YYText());
nFlagsForStream = readLabel(nFlagsStream);
BEGIN(cellStreamTitle);
}
<cellStreamTitle>{spaceNl}{word}{spaceNl} {
word streamName(Foam::string::validate<word>(YYText()));
BEGIN(cellStreamFlags);
}
<cellStreamFlags>{labelList} {
Info<< "Reading cell stream labels" << endl;
BEGIN(cellStreamLabels);
}
<cellStreamLabels>{spaceNl}{labelList} {
IStringStream nFlagsStream(YYText());
label cellLabel;
while (nFlagsStream.read(cellLabel))
{
cellStreamIDs[cellLabel - 1] = curGroupID;
}
// reset current group ID and a number of flags
curGroupID = 0;
nFlagsForStream = 0;
}
/* ------ Reading end of section and others ------ */
<cellStreamLabels>{endOfSection}\n {
Info<< "Finished reading cell stream labels" << endl;
// reset current group ID and a number of flags
curGroupID = 0;
nFlagsForStream = 0;
BEGIN(INITIAL);
}
{boundaryPatch}{spaceNl} {
curPatchFace = 0;
Info<< "Reading patches" << endl;
BEGIN(boundaryPatchParams);
}
<boundaryPatchParams>{spaceNl}{word}{labelList} {
IStringStream patchParamsStream(YYText());
patchParamsStream.read(patchNames[curBoundaryPatch]);
readLabel(patchParamsStream);
label nEntry(readLabel(patchParamsStream));
nValuesForPatchFaces = readLabel(patchParamsStream);
patchCells[curBoundaryPatch].setSize(nEntry);
patchCellFaces[curBoundaryPatch].setSize(nEntry);
Info<< "patch " << curBoundaryPatch
<< ": name: " << patchNames[curBoundaryPatch]
<< endl;
BEGIN(boundaryPatchFaces);
}
<boundaryPatchFaces>{spaceNl}{label}{space}{label}{space}{label}({scalarList}|{space}\n) {
// Face-based boundary condition
IStringStream patchFacesStream(YYText());
patchCells[curBoundaryPatch][curPatchFace] =
readLabel(patchFacesStream);
readLabel(patchFacesStream);
patchCellFaces[curBoundaryPatch][curPatchFace] =
readLabel(patchFacesStream);
// patch face values currently discarded
if (nValuesForPatchFaces > 0)
{
scalarList patchFaceValues(nValuesForPatchFaces);
forAll(patchFaceValues, fI)
{
patchFaceValues[fI] = readScalar(patchFacesStream);
}
}
curPatchFace++;
}
<boundaryPatchFaces>{spaceNl}{label}({scalarList}|\n) {
// Vertex-based boundary condition
FatalErrorIn("gambitToFoam::main")
<< "<boundaryPatchFaces>{spaceNl}{label}{scalarList} : "
<< "boundary condition specified on vertices not supported"
<< abort(FatalError);
}
<boundaryPatchFaces>{endOfSection}\n {
curBoundaryPatch++;
BEGIN(INITIAL);
}
/* ------ Reading end of section and others ------ */
<controlInfo,nodalCoords,cellsAndElements>{endOfSection}\n {
BEGIN(INITIAL);
}
/* ------ Ignore remaining space and \n s. Any other characters are errors. */
.|\n {}
/* ------ On EOF return to previous file, if none exists terminate. ------ */
<<EOF>> {
yyterminate();
}
%%
#include "fileName.H"
#include <fstream>
using std::ifstream;
int main(int argc, char *argv[])
{
argList::noParallel();
argList::validArgs.append("GAMBIT file");
argList::validOptions.insert("scale", "scale factor");
argList args(argc, argv);
if (!args.check())
{
FatalError.exit();
}
scalar scaleFactor = 1.0;
args.optionReadIfPresent("scale", scaleFactor);
# include "createTime.H"
fileName gambitFile(args.additionalArgs()[0]);
ifstream gambitStream(gambitFile.c_str());
if (!gambitStream)
{
FatalErrorIn("gambitToFoam::main")
<< args.executable()
<< ": file " << gambitFile << " not found"
<< abort(FatalError);
}
yyFlexLexer lexer(&gambitStream);
while (lexer.yylex() != 0)
{}
Info<< "Finished lexing" << endl;
// make a point mapping array
label maxPointIndex = 0;
forAll(pointMap, pointI)
{
if (pointMap[pointI] > maxPointIndex)
{
maxPointIndex = pointMap[pointI];
}
}
labelList pointLookup(maxPointIndex + 1, -1);
forAll(pointMap, pointI)
{
pointLookup[pointMap[pointI] ] = pointI;
}
// make a cell mapping array
label maxCellIndex = 0;
forAll(cellMap, cellI)
{
if (cellMap[cellI] > maxCellIndex)
{
maxCellIndex = cellMap[cellI];
}
}
labelList cellLookup(maxCellIndex + 1);
forAll(cellMap, cellI)
{
cellLookup[cellMap[cellI] ] = cellI;
}
const cellModel& hex = *(cellModeller::lookup("hex"));
const cellModel& prism = *(cellModeller::lookup("prism"));
const cellModel& pyr = *(cellModeller::lookup("pyr"));
const cellModel& tet = *(cellModeller::lookup("tet"));
labelList labelsHex(8);
labelList labelsPrism(6);
labelList labelsPyramid(5);
labelList labelsTet(4);
cellShapeList cells(cellLabels.size());
forAll(cellTypes, cellI)
{
const labelList& curCellLabels = cellLabels[cellI];
// Tetrahedron
if (cellTypes[cellI] == 6)
{
labelsTet[0] = pointLookup[curCellLabels[0] ];
labelsTet[1] = pointLookup[curCellLabels[2] ];
labelsTet[2] = pointLookup[curCellLabels[3] ];
labelsTet[3] = pointLookup[curCellLabels[1] ];
cells[cellI] = cellShape(tet, labelsTet);
}
// Square-based pyramid
else if (cellTypes[cellI] == 7)
{
labelsPyramid[0] = pointLookup[curCellLabels[0] ];
labelsPyramid[1] = pointLookup[curCellLabels[1] ];
labelsPyramid[2] = pointLookup[curCellLabels[3] ];
labelsPyramid[3] = pointLookup[curCellLabels[2] ];
labelsPyramid[4] = pointLookup[curCellLabels[4] ];
cells[cellI] = cellShape(pyr, labelsPyramid);
}
// Triangular prism
else if (cellTypes[cellI] == 5)
{
labelsPrism[0] = pointLookup[curCellLabels[0] ];
labelsPrism[1] = pointLookup[curCellLabels[1] ];
labelsPrism[2] = pointLookup[curCellLabels[2] ];
labelsPrism[3] = pointLookup[curCellLabels[3] ];
labelsPrism[4] = pointLookup[curCellLabels[4] ];
labelsPrism[5] = pointLookup[curCellLabels[5] ];
cells[cellI] = cellShape(prism, labelsPrism);
}
// Hex
else if (cellTypes[cellI] == 4)
{
labelsHex[0] = pointLookup[curCellLabels[0] ];
labelsHex[1] = pointLookup[curCellLabels[1] ];
labelsHex[2] = pointLookup[curCellLabels[3] ];
labelsHex[3] = pointLookup[curCellLabels[2] ];
labelsHex[4] = pointLookup[curCellLabels[4] ];
labelsHex[5] = pointLookup[curCellLabels[5] ];
labelsHex[6] = pointLookup[curCellLabels[7] ];
labelsHex[7] = pointLookup[curCellLabels[6] ];
cells[cellI] = cellShape(hex, labelsHex);
}
}
// give foam model face number given a fluent model face number
label faceIndex[8][6] =
{
{-1, -1, -1, -1, -1, -1}, // 0
{-1, -1, -1, -1, -1, -1}, // 1
{-1, -1, -1, -1, -1, -1}, // 2
{ 2, 1, 3, 0, 4, 5}, // Hex (3)
{-1, -1, -1, -1, -1, -1}, // 4
{ 4, 3, 2, 0, 1, -1}, // Triangular prism (5)
{ 0, 4, 3, 2, 1, -1}, // Pyramid (6)
{ 2, 1, 0, 3, -1, -1} // Tet (7)
};
faceListList boundary(patchCells.size());
forAll(patchCells, patchI)
{
labelList& curCells = patchCells[patchI];
labelList& curFaces = patchCellFaces[patchI];
faceList& patchFaces = boundary[patchI];
patchFaces.setSize(curCells.size());
forAll(curCells, faceI)
{
patchFaces[faceI] =
cells[cellLookup[curCells[faceI] ] ].faces()
[
faceIndex
[
// this picks a cell type
cells[cellLookup[curCells[faceI] ] ]
.model().index()
]
[curFaces[faceI] - 1] // this gives a fluent face - 1
];
}
}
Info<< "gambitToFoam: " << endl
<< "Gambit file format does not provide information about the type of "
<< "the patch (eg. wall, symmetry plane, cyclic etc)." << endl
<< "All the patches have been created "
<< "as type patch. Please reset after mesh conversion as necessary."
<< endl;
// Scale points
points *= scaleFactor;
PtrList<dictionary> patchDicts(boundary.size());
word defaultFacesName = "defaultFaces";
word defaultFacesType = emptyPolyPatch::typeName;
preservePatchTypes
(
runTime,
runTime.constant(),
polyMesh::meshSubDir,
patchNames,
patchDicts,
defaultFacesName,
defaultFacesType
);
// Add information to dictionary
forAll(patchNames, patchI)
{
if (!patchDicts.set(patchI))
{
patchDicts.set(patchI, new dictionary());
}
// Add but not overwrite
patchDicts[patchI].add("type", polyPatch::typeName, false);
}
polyMesh pShapeMesh
(
IOobject
(
polyMesh::defaultRegion,
runTime.constant(),
runTime
),
xferMove(points),
cells,
boundary,
patchNames,
patchDicts,
defaultFacesName,
defaultFacesType
);
// Set the precision of the points data to 10
IOstream::defaultPrecision(max(10u, IOstream::defaultPrecision()));
Info<< "Writing polyMesh" << endl;
pShapeMesh.write();
Info<< "\nEnd\n" << endl;
return 0;
}
/* ------------------------------------------------------------------------- *\
------ End of gambitToFoam.L
\* ------------------------------------------------------------------------- */