#!/bin/sh

#
# FUNCTIONS
#
printUsage () {
cat <<EOF
Usage: $0 [options]
Runs a set of samples across the cone face and concatenates output files

Options are:
-l         -latestTime option for sample
-h         help
EOF
}

LATEST_TIME=""

OPTS=`getopt hl $*`
if [ $? -ne 0 ] ; then
    echo "Aborting due to invalid option"
    printUsage
    exit 1
fi
eval set -- "$OPTS"
while [ $1 != -- ]; do
    case $1 in
        -l) LATEST_TIME="-latestTime";;
        -h) printUsage; exit 1;;
    esac
    shift
done
shift

sample ${LATEST_TIME}
SDIR="sets"
LSDIR=`ls $SDIR | head -1`
EXAMPLE_FILE=`ls -1 $SDIR/${LSDIR}/* | head -1`
FS=`basename $EXAMPLE_FILE | cut -d_ -f2-`
for d in $SDIR/*
do
   cat ${d}/cone25_${FS} ${d}/cone55_${FS} ${d}/base_${FS} > ${d}/biconic_${FS}
done