exaFOAM/foam-extend4.1-coherent-io
Archived
1
1
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

changes to library and settings

Browse source
This commit is contained in:
Henrik Rusche 2013-11-26 13:00:51 +01:00
parent c4069006ac
commit eafe626e71
10 changed files with 58 additions and 101 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
ThirdParty/AllClean.stage2 vendored
View file

@ -54,6 +54,7 @@ uninstallPackage openmpi-1.4.1
uninstallPackage openmpi-1.4.3
uninstallPackage openmpi-1.5
uninstallPackage openmpi-1.6.3
uninstallPackage openmpi-1.6.5
echo
echo ========================================

2
ThirdParty/rpmBuild/SPECS/metis-5.1.0.spec vendored
View file

@ -98,6 +98,8 @@ Patch0: metis-5.0pre2_patch_darwin
[ -n "$WM_CXXFLAGS" ] && export CXXFLAGS="$WM_CXXFLAGS"
[ -n "$WM_LDFLAGS" ] && export LDFLAGS="$WM_LDFLAGS"
[ -n "$WM_CXX" ] && export OMPI_CXX="$WM_CXX"
[ -z "$WM_NCOMPPROCS" ] && WM_NCOMPPROCS=1
%ifos darwin

4
ThirdParty/rpmBuild/SPECS/openmpi-1.6.5.spec vendored
View file

@ -67,13 +67,13 @@
%define buildroot %{_topdir}/BUILD/%{name}-%{version}-root
BuildRoot: %{buildroot}
BuildRoot: %{buildroot}
Summary: openmpi
License: Unkown
Name: %{name}
Version: %{version}
Release: %{release}
URL: http://www.open-mpi.org/software/ompi/v1.6/downloads
URL: http://www.open-mpi.org/software/ompi/v1.6/downloads
Source: %url/%{name}-%{version}.tar.gz
Prefix: %{_prefix}
Group: Development/Tools

6
ThirdParty/rpmBuild/SPECS/ParMetis-4.0.3.spec → ThirdParty/rpmBuild/SPECS/parmetis-4.0.3.spec vendored
View file

@ -101,6 +101,8 @@ Patch1: ParMetis-3.1.1.patch
[ -n "$WM_CXXFLAGS" ] && export CXXFLAGS="$WM_CXXFLAGS"
[ -n "$WM_LDFLAGS" ] && export LDFLAGS="$WM_LDFLAGS"
[ -n "$WM_CXX" ] && export OMPI_CXX="$WM_CXX"
[ -z "$WM_NCOMPPROCS" ] && WM_NCOMPPROCS=1
make config
make -j $WM_NCOMPPROCS
@ -108,11 +110,11 @@ Patch1: ParMetis-3.1.1.patch
%install
# Manual installation
mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/include/ParMETISLib
mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/include
mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/lib
cp metis/include/*.h $RPM_BUILD_ROOT/%{_installPrefix}/include
cp include/*.h $RPM_BUILD_ROOT/%{_installPrefix}/include
cp metis/libmetis/*.h $RPM_BUILD_ROOT/%{_installPrefix}/include/ParMETISLib
cp build/*/libparmetis/lib* $RPM_BUILD_ROOT/%{_installPrefix}/lib
cp build/*/libmetis/lib* $RPM_BUILD_ROOT/%{_installPrefix}/lib

12
etc/settings.csh
View file

@ -414,14 +414,14 @@ endif
# Metis library if available
# ~~~~~~~~~~~~~~~~~~~~~~~~~~
if ( $?METIS_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/metis-5.0pre2/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/metis-5.0pre2/platforms/$WM_OPTIONS/etc/metis-5.0pre2.csh
if ( $?METIS_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/metis-5.1.0/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/metis-5.1.0/platforms/$WM_OPTIONS/etc/metis-5.1.0.csh
endif
# ParMetis library if available
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
if ( $?PARMETIS_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/ParMetis-3.1.1/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/ParMetis-3.1.1/platforms/$WM_OPTIONS/etc/ParMetis-3.1.1.csh
if ( $?PARMETIS_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/parmetis-4.0.3/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/parmetis-4.0.3/platforms/$WM_OPTIONS/etc/parmetis-4.0.3.csh
endif
# ParMGridGen library if available
@ -439,8 +439,8 @@ endif
# Scotch library if available
# ~~~~~~~~~~~~~~~~~~~~~~~~~~~
if ( $?SCOTCH_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/scotch-5.1.10b/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/scotch-5.1.10b/platforms/$WM_OPTIONS/etc/scotch-5.1.10b.csh
if ( $?SCOTCH_SYSTEM == 0 && -e $WM_THIRD_PARTY_DIR/packages/scotch-6.0.0/platforms/$WM_OPTIONS ) then
_foamSource $WM_THIRD_PARTY_DIR/packages/scotch-6.0.0/platforms/$WM_OPTIONS/etc/scotch-6.0.0.csh
endif
# Switch on the hoard memory allocator if available

14
etc/settings.sh
View file

@ -484,16 +484,16 @@ export MPI_BUFFER_SIZE
# Load Metis library
# ~~~~~~~~~~~~~~~~~~
[ -z "$METIS_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/metis-5.0pre2/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/metis-5.0pre2/platforms/$WM_OPTIONS/etc/metis-5.0pre2.sh
[ -z "$METIS_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/metis-5.1.0/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/metis-5.1.0/platforms/$WM_OPTIONS/etc/metis-5.1.0.sh
}
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " METIS_DIR is initialized to: $METIS_DIR"
# Load ParMetis library
# ~~~~~~~~~~~~~~~~~~~~~
[ -z "$PARMETIS_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/ParMetis-3.1.1/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/ParMetis-3.1.1/platforms/$WM_OPTIONS/etc/ParMetis-3.1.1.sh
[ -z "$PARMETIS_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/parmetis-4.0.3/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/parmetis-4.0.3/platforms/$WM_OPTIONS/etc/parmetis-4.0.3.sh
}
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " PARMETIS_DIR is initialized to: $PARMETIS_DIR"
@ -503,7 +503,7 @@ export MPI_BUFFER_SIZE
[ -z "$PARMGRIDGEN_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/ParMGridGen-1.0/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/ParMGridGen-1.0/platforms/$WM_OPTIONS/etc/ParMGridGen-1.0.sh
}
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " PARMGRIDGEN_DIR is initialized to: $PARMGRIDGEN_DIR"
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " PARMGR IDGEN_DIR is initialized to: $PARMGRIDGEN_DIR"
# Load Libccmio library
@ -516,8 +516,8 @@ export MPI_BUFFER_SIZE
# Load Scotch library
# ~~~~~~~~~~~~~~~~~~~
[ -z "$SCOTCH_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/scotch-5.1.10b/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/scotch-5.1.10b/platforms/$WM_OPTIONS/etc/scotch-5.1.10b.sh
[ -z "$SCOTCH_SYSTEM" ] && [ -e $WM_THIRD_PARTY_DIR/packages/scotch-6.0.0/platforms/$WM_OPTIONS ] && {
_foamSource $WM_THIRD_PARTY_DIR/packages/scotch-6.0.0/platforms/$WM_OPTIONS/etc/scotch-6.0.0.sh
}
[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " SCOTCH_DIR is initialized to: $SCOTCH_DIR"

4
src/decompositionMethods/decompositionMethods/Make/options
View file

@ -3,6 +3,4 @@ EXE_INC =
LIB_LIBS = \
-L$(FOAM_LIBBIN)/dummy \
-L$(FOAM_MPI_LIBBIN) \
-lscotchDecomp \
-lmetisDecomp \
-lparMetisDecomp
-lscotchDecomp

4
src/decompositionMethods/metisDecomp/Make/options
View file

@ -5,6 +5,4 @@ EXE_INC = \
LIB_LIBS = \
-L$(FOAM_LIBBIN)/dummy \
-L$(METIS_LIB_DIR) -lmetis \
-L$(METIS_LIB_DIR) -lGKlib
-L$(METIS_LIB_DIR) -lmetis

110
src/decompositionMethods/metisDecomp/metisDecomp.C
View file

@ -62,9 +62,6 @@ Foam::label Foam::metisDecomp::decompose
List<int>& finalDecomp
)
{
// C style numbering
int numFlag = 0;
// Method of decomposition
// recursive: multi-level recursive bisection (default)
// k-way: multi-level k-way
@ -207,96 +204,57 @@ Foam::label Foam::metisDecomp::decompose
int edgeCut = 0;
// Vertex weight info
int wgtFlag = 0;
int* vwgtPtr = NULL;
int* adjwgtPtr = NULL;
if (cellWeights.size())
{
vwgtPtr = cellWeights.begin();
wgtFlag += 2; // Weights on vertices
}
if (faceWeights.size())
{
adjwgtPtr = faceWeights.begin();
wgtFlag += 1; // Weights on edges
}
int one = 1;
if (method == "recursive")
{
if (processorWeights.size())
{
METIS_WPartGraphRecursive
(
&numCells, // num vertices in graph
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
adjwgtPtr, // no edgeweights
&wgtFlag,
&numFlag,
&nProcs,
processorWeights.begin(),
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
else
{
METIS_PartGraphRecursive
(
&numCells, // num vertices in graph
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
adjwgtPtr, // no edgeweights
&wgtFlag,
&numFlag,
&nProcs,
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
METIS_PartGraphRecursive
(
&numCells, // num vertices in graph
&one,
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
NULL,
adjwgtPtr, // no edgeweights
&nProcs,
processorWeights.begin(),
NULL,
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
else
{
if (processorWeights.size())
{
METIS_WPartGraphKway
(
&numCells, // num vertices in graph
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
adjwgtPtr, // no edgeweights
&wgtFlag,
&numFlag,
&nProcs,
processorWeights.begin(),
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
else
{
METIS_PartGraphKway
(
&numCells, // num vertices in graph
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
adjwgtPtr, // no edgeweights
&wgtFlag,
&numFlag,
&nProcs,
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
METIS_PartGraphKway
(
&numCells, // num vertices in graph
&one,
const_cast<List<int>&>(xadj).begin(), // indexing into adjncy
const_cast<List<int>&>(adjncy).begin(), // neighbour info
vwgtPtr, // vertexweights
NULL,
adjwgtPtr, // no edgeweights
&nProcs,
processorWeights.begin(),
NULL,
options.begin(),
&edgeCut,
finalDecomp.begin()
);
}
return edgeCut;

2
src/decompositionMethods/parMetisDecomp/Make/options
View file

@ -2,7 +2,6 @@ include $(RULES)/mplib$(WM_MPLIB)
EXE_INC = \
$(PFLAGS) $(PINC) \
-I$(PARMETIS_INCLUDE_DIR)/ParMETISLib \
-I$(PARMETIS_INCLUDE_DIR) \
-I../decompositionMethods/lnInclude \
-I../metisDecomp/lnInclude \
@ -10,5 +9,4 @@ EXE_INC = \
LIB_LIBS = \
-L$(FOAM_MPI_LIBBIN) \
-L$(PARMETIS_LIB_DIR) -lmetis-parmetis \
-L$(PARMETIS_LIB_DIR) -lparmetis