Merge remote-tracking branch 'origin/proposal/famTutorialReorganization' into nextRelease

.gitignore

@@ -93,4 +93,12 @@ src/lduSolvers/amg/amgPolicy/samgPolicy.H
 src/lduSolvers/amg/amgPolicy/aamgPolicy.C
 src/lduSolvers/amg/amgPolicy/aamgPolicy.H
 
+# The following files are blacklisted because of a DMCA complaint by ANSYS.
+src/lduSolvers/tools/PriorityArray.C
+src/lduSolvers/tools/PriorityArray.H
+src/lduSolvers/amg/amgPolicy/samgPolicy.C
+src/lduSolvers/amg/amgPolicy/samgPolicy.H
+src/lduSolvers/amg/amgPolicy/aamgPolicy.C
+src/lduSolvers/amg/amgPolicy/aamgPolicy.H
+
 # end-of-file

applications/solvers/surfaceTracking/surfactantFoam/createFaFields.H

@@ -12,26 +12,28 @@ areaScalarField Cs
     aMesh
 );
 
-dimensioned<scalar> Cs0
+Info<< "Reading transportProperties\n" << endl;
+
+IOdictionary transportProperties
 (
-    "Cs0",
+    IOobject
-    dimensionSet(1, -2, 0, 0, 0, 0, 0),
+    (
-    1.0
+        "transportProperties",
+        runTime.constant(),
+        mesh,
+        IOobject::MUST_READ,
+        IOobject::NO_WRITE
+    )
 );
 
-const areaVectorField& R = aMesh.areaCentres();
 
-Cs = Cs0*(1.0 + R.component(vector::X)/mag(R));
+Info<< "Reading diffusivity D\n" << endl;
 
-
+dimensionedScalar Ds
-dimensioned<scalar> Ds
 (
-    "Ds",
+    transportProperties.lookup("Ds")
-    dimensionSet(0, 2, -1, 0, 0, 0, 0),
-    1.0
 );
 
-
 areaVectorField Us
 (
     IOobject
@@ -39,29 +41,12 @@ areaVectorField Us
         "Us",
         runTime.timeName(),
         mesh,
-        IOobject::NO_READ,
+        IOobject::MUST_READ,
         IOobject::NO_WRITE
     ),
-    aMesh,
+    aMesh
-    dimensioned<vector>("Us", dimVelocity, vector::zero)
 );
 
-dimensioned<scalar> Uinf("Uinf", dimVelocity, 1.0);
-
-forAll (Us, faceI)
-{
-    Us[faceI].x() =
-        Uinf.value()*(0.25*(3.0 + sqr(R[faceI].x()/mag(R[faceI]))) - 1.0);
-
-    Us[faceI].y() =
-        Uinf.value()*0.25*R[faceI].x()*R[faceI].y()/sqr(mag(R[faceI]));
-
-    Us[faceI].z() =
-        Uinf.value()*0.25*R[faceI].x()*R[faceI].z()/sqr(mag(R[faceI]));
-}
-
-Us -= aMesh.faceAreaNormals()*(aMesh.faceAreaNormals() & Us);
-
 
 edgeScalarField phis
 (

tutorials/surfaceTracking/surfactantFoam/planeTransport/0/Cs

@@ -0,0 +1,41 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       areaScalarField;
+    location    "0";
+    object      Cs;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions          [1 -2 0 0 0 0 0];
+
+internalField       uniform 0;
+
+referenceLevel      0;
+
+boundaryField
+{
+    inlet {
+        type fixedValue;
+        value uniform 1;
+    }
+    outlet {
+        type inletOutlet;
+        value uniform 1;
+        phi phis;
+        inletValue uniform 0;
+    }
+    bound {
+        type symmetryPlane;
+    }
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

tutorials/surfaceTracking/surfactantFoam/planeTransport/0/Cvf

@@ -0,0 +1,52 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       volScalarField;
+    location    "0";
+    object      Cvf;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions      [0 -1 0 0 0 0 0];
+
+internalField   uniform 0;
+
+boundaryField
+{
+    inlet
+    {
+        type            calculated;
+        value           uniform 0;
+    }
+    bound
+    {
+        type            calculated;
+        value           uniform 0;
+    }
+    outlet
+    {
+        type            calculated;
+        value           uniform 0;
+    }
+    bottom
+    {
+        type            calculated;
+        value           uniform 0;
+    }
+    top
+    {
+        type            calculated;
+        value           uniform 0;
+    }
+}
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/0/U

@@ -0,0 +1,52 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       volVectorField;
+    location    "0";
+    object      U;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions      [0 1 -1 0 0 0 0];
+
+internalField   uniform (0 0 0);
+
+boundaryField
+{
+    inlet
+    {
+        type            calculated;
+        value           uniform (0 0 0);
+    }
+    bound
+    {
+        type            calculated;
+        value           uniform (0 0 0);
+    }
+    outlet
+    {
+        type            calculated;
+        value           uniform (0 0 0);
+    }
+    bottom
+    {
+        type            calculated;
+        value           uniform (0 0 0);
+    }
+    top
+    {
+        type            calculated;
+        value           uniform (0.05 0 0);
+    }
+}
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/0/Us

@@ -0,0 +1,36 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       areaVectorField;
+    location    "0";
+    object      Us;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions          [0 1 -1 0 0 0 0];
+
+internalField       uniform (0.05 0 0);
+
+boundaryField
+{
+    inlet {
+        type fixedValue;
+        value $internalField;
+    }
+    outlet {
+        type zeroGradient;
+    }
+    bound {
+        type symmetryPlane;
+    }
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

tutorials/surfaceTracking/surfactantFoam/planeTransport/Allrun

@@ -4,5 +4,6 @@
 
 application="surfactantFoam"
 
+runApplication blockMesh
 runApplication makeFaMesh
 runApplication $application

tutorials/surfaceTracking/surfactantFoam/planeTransport/constant/faMesh/faMeshDefinition

@@ -0,0 +1,40 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version         2.0;
+    format          ascii;
+    class           dictionary;
+    object          faMeshDefinition;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+polyMeshPatches  1( top );
+
+boundary
+{
+    inlet {
+        type patch;
+        ownerPolyPatch top;
+        neighbourPolyPatch inlet;
+    }
+    outlet {
+        type patch;
+        ownerPolyPatch top;
+        neighbourPolyPatch outlet;
+    }
+    bound {
+        type symmetryPlane;
+        ownerPolyPatch top;
+        neighbourPolyPatch bound;
+    }
+}
+
+
+// ************************************************************************** //

tutorials/surfaceTracking/surfactantFoam/planeTransport/constant/polyMesh/blockMeshDict

@@ -0,0 +1,69 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
+|  \\    /   O peration     | Version:  1.5                                   |
+|   \\  /    A nd           | Web:      http://www.OpenFOAM.org               |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      blockMeshDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+convertToMeters 0.1;
+
+vertices
+(
+    (0 0 0)
+    (3 0 0)
+    (3 1 0)
+    (0 1 0)
+    (0 0 0.1)
+    (3 0 0.1)
+    (3 1 0.1)
+    (0 1 0.1)
+);
+
+blocks
+(
+    hex (0 1 2 3 4 5 6 7) (60 20 1) simpleGrading (1 1 1)
+);
+
+edges
+(
+);
+
+patches
+(
+    patch inlet
+    (
+        (0 4 7 3)
+    )
+    wall bound
+    (
+        (3 7 6 2)
+        (1 5 4 0)
+    )
+    patch outlet
+    (
+        (2 6 5 1)
+    )
+    patch bottom
+    (
+        (0 3 2 1)
+    )
+    patch top
+    (
+        (4 5 6 7)
+    )
+);
+
+mergePatchPairs
+(
+);
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/constant/polyMesh/boundary

@@ -0,0 +1,52 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       polyBoundaryMesh;
+    location    "constant/polyMesh";
+    object      boundary;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+5
+(
+    inlet
+    {
+        type            patch;
+        nFaces          20;
+        startFace       2320;
+    }
+    bound
+    {
+        type            wall;
+        nFaces          120;
+        startFace       2340;
+    }
+    outlet
+    {
+        type            patch;
+        nFaces          20;
+        startFace       2460;
+    }
+    bottom
+    {
+        type            patch;
+        nFaces          1200;
+        startFace       2480;
+    }
+    top
+    {
+        type            patch;
+        nFaces          1200;
+        startFace       3680;
+    }
+)
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/constant/transportProperties

@@ -0,0 +1,21 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
+|  \\    /   O peration     | Version:  1.6                                   |
+|   \\  /    A nd           | Web:      www.OpenFOAM.org                      |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "constant";
+    object      transportProperties;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+Ds              Ds [ 0 2 -1 0 0 0 0 ] 0.00001;
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/system/controlDict

@@ -0,0 +1,48 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      controlDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+application    surfactantFoam;
+
+startFrom           startTime;
+
+startTime           0;
+
+stopAt              endTime;
+
+endTime             6;
+
+deltaT              0.1;
+
+writeControl        runTime;
+
+writeInterval       0.2;
+
+purgeWrite          0;
+
+writeFormat         ascii;
+
+writeCompression    uncompressed;
+
+timeFormat          general;
+
+timePrecision       6;
+
+runTimeModifiable   yes;
+
+// ************************************************************************* //
+
+

tutorials/surfaceTracking/surfactantFoam/planeTransport/system/faSchemes

@@ -0,0 +1,57 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      faSchemes;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+ddtSchemes
+{
+    default            Euler;
+}
+
+gradSchemes
+{
+    default             Gauss linear;
+    grad(p)             Gauss linear;
+}
+
+divSchemes
+{
+    default             none;
+    div(phis,Cs)        Gauss linear;
+}
+
+laplacianSchemes
+{
+    default             none;
+    laplacian(Ds,Cs)    Gauss linear corrected;
+}
+
+interpolationSchemes
+{
+    default         linear;
+}
+
+snGradSchemes
+{
+    default             corrected;
+}
+
+fluxRequired
+{
+    p;
+}
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/system/faSolution

@@ -0,0 +1,52 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      faSolution;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+solvers
+{
+    Cs
+    {
+        solver          PBiCG;
+        preconditioner  DILU;
+        minIter         0;
+        maxIter         2000;
+        tolerance       1e-06;
+        relTol          0;
+    }
+}
+
+PISO
+{
+    nCorrectors                2;
+    nNonOrthogonalCorrectors   0;
+}
+
+SIMPLE
+{
+    nTimeCorrectors             6;
+    nNonOrthogonalCorrectors    1;
+}
+
+relaxationFactors
+{
+    p               0.7;
+    U               0.7;
+    k               0.7;
+    epsilon         0.7;
+    R               0.7;
+}
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/system/fvSchemes

@@ -0,0 +1,47 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      fvSchemes;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+ddtSchemes
+{
+}
+
+gradSchemes
+{
+}
+
+divSchemes
+{
+}
+
+laplacianSchemes
+{
+}
+
+interpolationSchemes
+{
+}
+
+snGradSchemes
+{
+}
+
+fluxRequired
+{
+}
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/planeTransport/system/fvSolution

@@ -0,0 +1,23 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
+|  \\    /   O peration     | Version:  1.6-ext                               |
+|   \\  /    A nd           | Web:      www.extend-project.de                 |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    location    "system";
+    object      fvSolution;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+solvers
+{
+}
+
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/Make/files

@@ -0,0 +1,3 @@
+surfactantFoam.C
+
+EXE = $(FOAM_USER_APPBIN)/sphereSurfactantFoam

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/Make/options

@@ -0,0 +1,9 @@
+EXE_INC = \
+    -I$(LIB_SRC)/finiteArea/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/cfdTools/general/lnInclude
+
+EXE_LIBS = \
+    -lfiniteArea \
+    -lfiniteVolume \
+    -llduSolvers

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/createFaFields.H

@@ -0,0 +1,78 @@
+Info << "Reading field Cs" << endl;
+areaScalarField Cs
+(
+    IOobject
+    (
+        "Cs",
+        runTime.timeName(),
+        mesh,
+        IOobject::MUST_READ,
+        IOobject::AUTO_WRITE
+    ),
+    aMesh
+);
+
+dimensioned<scalar> Cs0
+(
+    "Cs0",
+    dimensionSet(1, -2, 0, 0, 0, 0, 0),
+    1.0
+);
+
+const areaVectorField& R = aMesh.areaCentres();
+
+Cs = Cs0*(1.0 + R.component(vector::X)/mag(R));
+
+
+dimensioned<scalar> Ds
+(
+    "Ds",
+    dimensionSet(0, 2, -1, 0, 0, 0, 0),
+    1.0
+);
+
+
+areaVectorField Us
+(
+    IOobject
+    (
+        "Us",
+        runTime.timeName(),
+        mesh,
+        IOobject::NO_READ,
+        IOobject::NO_WRITE
+    ),
+    aMesh,
+    dimensioned<vector>("Us", dimVelocity, vector::zero)
+);
+
+dimensioned<scalar> Uinf("Uinf", dimVelocity, 1.0);
+
+forAll (Us, faceI)
+{
+    Us[faceI].x() =
+        Uinf.value()*(0.25*(3.0 + sqr(R[faceI].x()/mag(R[faceI]))) - 1.0);
+
+    Us[faceI].y() =
+        Uinf.value()*0.25*R[faceI].x()*R[faceI].y()/sqr(mag(R[faceI]));
+
+    Us[faceI].z() =
+        Uinf.value()*0.25*R[faceI].x()*R[faceI].z()/sqr(mag(R[faceI]));
+}
+
+Us -= aMesh.faceAreaNormals()*(aMesh.faceAreaNormals() & Us);
+
+
+edgeScalarField phis
+(
+    IOobject
+    (
+        "phis",
+        runTime.timeName(),
+        mesh,
+        IOobject::NO_READ,
+        IOobject::NO_WRITE
+    ),
+    linearEdgeInterpolate(Us) & aMesh.Le()
+);
+

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/createFaMesh.H

@@ -0,0 +1,2 @@
+    // Create Finite Area mesh
+    faMesh aMesh(mesh);

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/createVolFields.H

@@ -0,0 +1,36 @@
+    // Create volume-to surface mapping object
+    volSurfaceMapping vsm(aMesh);
+
+    volScalarField Cvf
+    (
+        IOobject
+        (
+            "Cvf",
+            runTime.timeName(),
+            mesh,
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        mesh,
+        dimensionedScalar("0", dimless/dimLength, 0)
+    );
+
+    vsm.mapToVolume(Cs, Cvf.boundaryField());
+    Cvf.write();
+
+    volVectorField U
+    (
+        IOobject
+        (
+            "U",
+            runTime.timeName(),
+            mesh,
+            IOobject::NO_READ,
+            IOobject::AUTO_WRITE
+        ),
+        mesh,
+        dimensionedVector("zero", dimVelocity, vector::zero)
+    );
+
+    vsm.mapToVolume(Us, U.boundaryField());
+    U.write();

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereSurfactantFoam/surfactantFoam.C

@@ -0,0 +1,83 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright (C) 2004-2007 Z. Tukovic and H. Jasak
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    finiteAreaFoam
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "fvCFD.H"
+#include "faCFD.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+#   include "createMesh.H"
+
+#   include "createFaMesh.H"
+#   include "createFaFields.H"
+#   include "createVolFields.H"
+
+    Info<< "Total mass of surfactant: " 
+        << sum(Cs.internalField()*aMesh.S()) << endl;
+
+    Info << "\nStarting time loop\n" << endl;
+
+    for (runTime++; !runTime.end(); runTime++)
+    {
+        Info << "Time = " << runTime.value() << endl;
+
+        faScalarMatrix CsEqn
+        (
+            fam::ddt(Cs)
+          + fam::div(phis, Cs)
+          - fam::laplacian(Ds, Cs)
+        );
+
+        CsEqn.solve();
+
+        if (runTime.outputTime())
+        {
+            vsm.mapToVolume(Cs, Cvf.boundaryField());
+
+            runTime.write();
+        }
+
+        Info<< "Total mass of surfactant: " 
+            << sum(Cs.internalField()*aMesh.S()) << endl;
+
+        Info << "ExecutionTime = "
+            << scalar(runTime.elapsedCpuTime())
+            << " s\n" << endl << endl;
+    }
+
+    return(0);
+}
+
+// ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereTransport/0/Cvf

@@ -1,6 +1,6 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
-| \\      /  F ield         | OpenFOAM Extend Project: Open Source CFD        |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
 |  \\    /   O peration     | Version:  1.6-ext                               |
 |   \\  /    A nd           | Web:      www.extend-project.de                 |
 |    \\/     M anipulation  |                                                 |
@@ -24,7 +24,7 @@ boundaryField
     outer
     {
         type            calculated;
-        value           nonuniform List<scalar>
+        value           nonuniform List<scalar> 
 600
 (
 0.348943
@@ -632,4 +632,5 @@ boundaryField
     }
 }
 
+
 // ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereTransport/0/U

@@ -1,6 +1,6 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
-| \\      /  F ield         | OpenFOAM Extend Project: Open Source CFD        |
+| \\      /  F ield         | OpenFOAM Extend Project: Open source CFD        |
 |  \\    /   O peration     | Version:  1.6-ext                               |
 |   \\  /    A nd           | Web:      www.extend-project.de                 |
 |    \\/     M anipulation  |                                                 |
@@ -24,7 +24,7 @@ boundaryField
     outer
     {
         type            calculated;
-        value           nonuniform List<vector>
+        value           nonuniform List<vector> 
 600
 (
 (-0.144039 -0.122998 0.0114965)
@@ -632,4 +632,5 @@ boundaryField
     }
 }
 
+
 // ************************************************************************* //

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereTransport/Allclean

@@ -0,0 +1,7 @@
+#!/bin/sh
+
+# Source tutorial clean functions
+. $WM_PROJECT_DIR/bin/tools/CleanFunctions
+
+cleanTimeDirectories
+cleanFaMesh

tutorials/surfaceTracking/surfactantFoam/sphereTransport/sphereTransport/Allrun

@@ -0,0 +1,10 @@
+#!/bin/sh
+# Source tutorial run functions
+. $WM_PROJECT_DIR/bin/tools/RunFunctions
+
+application="sphereSurfactantFoam"
+
+wmake ../$application
+
+runApplication makeFaMesh
+runApplication $application