Merge in next release

.gitignore

@@ -119,4 +119,7 @@ src/lduSolvers/amg/amgPolicy/samgPolicy.H
 src/lduSolvers/amg/amgPolicy/aamgPolicy.C
 src/lduSolvers/amg/amgPolicy/aamgPolicy.H
 
+# vagrant stuff
+vagrantSandbox/.vagrant/
+
 # end-of-file

.hgignore

@@ -108,4 +108,7 @@ src/lduSolvers/amg/amgPolicy/samgPolicy.H
 src/lduSolvers/amg/amgPolicy/aamgPolicy.C
 src/lduSolvers/amg/amgPolicy/aamgPolicy.H
 
+# vagrant stuff
+vagrantSandbox/.vagrant/
+
 # end-of-file

Allwmake.firstInstall

@@ -80,6 +80,7 @@ then
 fi
 
 # build ThirdParty sources that depend on main installation
+export WM_NCOMPPROCS=1
 ( cd $WM_THIRD_PARTY_DIR && ./AllMake.post )
 
 # ----------------------------------------------------------------- end-of-file

COPYING

@@ -1,281 +1,622 @@
                     GNU GENERAL PUBLIC LICENSE
-               Version 2, June 1991
+                       Version 3, 29 June 2007
 
- Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+ Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
-     51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
  Everyone is permitted to copy and distribute verbatim copies
  of this license document, but changing it is not allowed.
 
                             Preamble
 
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+  The GNU General Public License is a free, copyleft license for
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+
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+  The licenses for most software and other practical works are designed
-General Public License applies to most of the Free Software
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-Foundation's software and to any other program whose authors commit to
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+share and change all versions of a program--to make sure it remains free
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+license from a particular copyright holder is reinstated (a)
+provisionally, unless and until the copyright holder explicitly and
+finally terminates your license, and (b) permanently, if the copyright
+holder fails to notify you of the violation by some reasonable means
+prior to 60 days after the cessation.
+
+  Moreover, your license from a particular copyright holder is
+reinstated permanently if the copyright holder notifies you of the
+violation by some reasonable means, this is the first time you have
+received notice of violation of this License (for any work) from that
+copyright holder, and you cure the violation prior to 30 days after
+your receipt of the notice.
+
+  Termination of your rights under this section does not terminate the
+licenses of parties who have received copies or rights from you under
+this License.  If your rights have been terminated and not permanently
+reinstated, you do not qualify to receive new licenses for the same
+material under section 10.
+
+  9. Acceptance Not Required for Having Copies.
+
+  You are not required to accept this License in order to receive or
+run a copy of the Program.  Ancillary propagation of a covered work
+occurring solely as a consequence of using peer-to-peer transmission
+to receive a copy likewise does not require acceptance.  However,
+nothing other than this License grants you permission to propagate or
+modify any covered work.  These actions infringe copyright if you do
+not accept this License.  Therefore, by modifying or propagating a
+covered work, you indicate your acceptance of this License to do so.
+
+  10. Automatic Licensing of Downstream Recipients.
+
+  Each time you convey a covered work, the recipient automatically
+receives a license from the original licensors, to run, modify and
+propagate that work, subject to this License.  You are not responsible
+for enforcing compliance by third parties with this License.
+
+  An "entity transaction" is a transaction transferring control of an
+organization, or substantially all assets of one, or subdividing an
+organization, or merging organizations.  If propagation of a covered
+work results from an entity transaction, each party to that
+transaction who receives a copy of the work also receives whatever
+licenses to the work the party's predecessor in interest had or could
+give under the previous paragraph, plus a right to possession of the
+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+  You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License.  For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+  11. Patents.
+
+  A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based.  The
+work thus licensed is called the contributor's "contributor version".
+
+  A contributor's "essential patent claims" are all patent claims
+owned or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version.  For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
 this License.
 
-  7. If, as a consequence of a court judgment or allegation of patent
+  Each contributor grants you a non-exclusive, worldwide, royalty-free
-infringement or for any other reason (not limited to patent issues),
+patent license under the contributor's essential patent claims, to
-conditions are imposed on you (whether by court order, agreement or
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+  In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
+sue for patent infringement).  To "grant" such a patent license to a
+party means to make such an agreement or commitment not to enforce a
+patent against the party.
+
+  If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
+to copy, free of charge and under the terms of this License, through a
+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients.  "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+  If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+  A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License.  You may not convey a covered
+work if you are a party to an arrangement with a third party that is
+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
 otherwise) that contradict the conditions of this License, they do not
-excuse you from the conditions of this License.  If you cannot
+excuse you from the conditions of this License.  If you cannot convey a
-distribute so as to satisfy simultaneously your obligations under this
+covered work so as to satisfy simultaneously your obligations under this
-License and any other pertinent obligations, then as a consequence you
+License and any other pertinent obligations, then as a consequence you may
-may not distribute the Program at all.  For example, if a patent
+not convey it at all.  For example, if you agree to terms that obligate you
-license would not permit royalty-free redistribution of the Program by
+to collect a royalty for further conveying from those to whom you convey
-all those who receive copies directly or indirectly through you, then
+the Program, the only way you could satisfy both those terms and this
-the only way you could satisfy both it and this License would be to
+License would be to refrain entirely from conveying the Program.
-refrain entirely from distribution of the Program.
 
-If any portion of this section is held invalid or unenforceable under
+  13. Use with the GNU Affero General Public License.
-any particular circumstance, the balance of the section is intended to
-apply and the section as a whole is intended to apply in other
-circumstances.
 
-It is not the purpose of this section to induce you to infringe any
+  Notwithstanding any other provision of this License, you have
-patents or other property right claims or to contest validity of any
+permission to link or combine any covered work with a work licensed
-such claims; this section has the sole purpose of protecting the
+under version 3 of the GNU Affero General Public License into a single
-integrity of the free software distribution system, which is
+combined work, and to convey the resulting work.  The terms of this
-implemented by public license practices.  Many people have made
+License will continue to apply to the part which is the covered work,
-generous contributions to the wide range of software distributed
+but the special requirements of the GNU Affero General Public License,
-through that system in reliance on consistent application of that
+section 13, concerning interaction through a network will apply to the
-system; it is up to the author/donor to decide if he or she is willing
+combination as such.
-to distribute software through any other system and a licensee cannot
-impose that choice.
 
-This section is intended to make thoroughly clear what is believed to
+  14. Revised Versions of this License.
-be a consequence of the rest of this License.
 
-  8. If the distribution and/or use of the Program is restricted in
+  The Free Software Foundation may publish revised and/or new versions of
-certain countries either by patents or by copyrighted interfaces, the
+the GNU General Public License from time to time.  Such new versions will
-original copyright holder who places the Program under this License
-may add an explicit geographical distribution limitation excluding
-those countries, so that distribution is permitted only in or among
-countries not thus excluded.  In such case, this License incorporates
-the limitation as if written in the body of this License.
-
-  9. The Free Software Foundation may publish revised and/or new versions
-of the General Public License from time to time.  Such new versions will
 be similar in spirit to the present version, but may differ in detail to
 address new problems or concerns.
 
-Each version is given a distinguishing version number.  If the Program
+  Each version is given a distinguishing version number.  If the
-specifies a version number of this License which applies to it and "any
+Program specifies that a certain numbered version of the GNU General
-later version", you have the option of following the terms and conditions
+Public License "or any later version" applies to it, you have the
-either of that version or of any later version published by the Free
+option of following the terms and conditions either of that numbered
-Software Foundation.  If the Program does not specify a version number of
+version or of any later version published by the Free Software
-this License, you may choose any version ever published by the Free Software
+Foundation.  If the Program does not specify a version number of the
-Foundation.
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
 
-  10. If you wish to incorporate parts of the Program into other free
+  If the Program specifies that a proxy can decide which future
-programs whose distribution conditions are different, write to the author
+versions of the GNU General Public License can be used, that proxy's
-to ask for permission.  For software which is copyrighted by the Free
+public statement of acceptance of a version permanently authorizes you
-Software Foundation, write to the Free Software Foundation; we sometimes
+to choose that version for the Program.
-make exceptions for this.  Our decision will be guided by the two goals
-of preserving the free status of all derivatives of our free software and
-of promoting the sharing and reuse of software generally.
 
-                NO WARRANTY
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
 
-  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
+  15. Disclaimer of Warranty.
-FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
-OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
-PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
-OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
-TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
-PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
-REPAIR OR CORRECTION.
 
-  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
-WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
+APPLICABLE LAW.  EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
-REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
-INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
-OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
-TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
+PURPOSE.  THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
-YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
+IS WITH YOU.  SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
-PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
-POSSIBILITY OF SUCH DAMAGES.
+
+  16. Limitation of Liability.
+
+  IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
 
                      END OF TERMS AND CONDITIONS
 
@@ -287,15 +628,15 @@ free software which everyone can redistribute and change under these terms.
 
   To do so, attach the following notices to the program.  It is safest
 to attach them to the start of each source file to most effectively
-convey the exclusion of warranty; and each file should have at least
+state the exclusion of warranty; and each file should have at least
 the "copyright" line and a pointer to where the full notice is found.
 
     <one line to give the program's name and a brief idea of what it does.>
     Copyright (C) <year>  <name of author>
 
-    This program is free software; you can redistribute it and/or modify
+    This program is free software: you can redistribute it and/or modify
     it under the terms of the GNU General Public License as published by
-    the Free Software Foundation; either version 2 of the License, or
+    the Free Software Foundation, either version 3 of the License, or
     (at your option) any later version.
 
     This program is distributed in the hope that it will be useful,
@@ -304,37 +645,30 @@ the "copyright" line and a pointer to where the full notice is found.
     GNU General Public License for more details.
 
     You should have received a copy of the GNU General Public License
-    along with this program; if not, write to the Free Software
+    along with this program.  If not, see <http://www.gnu.org/licenses/>.
-    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA
-
 
 Also add information on how to contact you by electronic and paper mail.
 
-If the program is interactive, make it output a short notice like this
+  If the program does terminal interaction, make it output a short
-when it starts in an interactive mode:
+notice like this when it starts in an interactive mode:
 
-    Gnomovision version 69, Copyright (C) year  name of author
+    <program>  Copyright (C) <year>  <name of author>
-    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
     This is free software, and you are welcome to redistribute it
     under certain conditions; type `show c' for details.
 
 The hypothetical commands `show w' and `show c' should show the appropriate
-parts of the General Public License.  Of course, the commands you use may
+parts of the General Public License.  Of course, your program's commands
-be called something other than `show w' and `show c'; they could even be
+might be different; for a GUI interface, you would use an "about box".
-mouse-clicks or menu items--whatever suits your program.
 
-You should also get your employer (if you work as a programmer) or your
+  You should also get your employer (if you work as a programmer) or school,
-school, if any, to sign a "copyright disclaimer" for the program, if
+if any, to sign a "copyright disclaimer" for the program, if necessary.
-necessary.  Here is a sample; alter the names:
+For more information on this, and how to apply and follow the GNU GPL, see
+<http://www.gnu.org/licenses/>.
 
-  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+  The GNU General Public License does not permit incorporating your program
-  `Gnomovision' (which makes passes at compilers) written by James Hacker.
+into proprietary programs.  If your program is a subroutine library, you
-
+may consider it more useful to permit linking proprietary applications with
-  <signature of Ty Coon>, 1 April 1989
+the library.  If this is what you want to do, use the GNU Lesser General
-  Ty Coon, President of Vice
+Public License instead of this License.  But first, please read
-
+<http://www.gnu.org/philosophy/why-not-lgpl.html>.
-This General Public License does not permit incorporating your program into
-proprietary programs.  If your program is a subroutine library, you may
-consider it more useful to permit linking proprietary applications with the
-library.  If this is what you want to do, use the GNU Library General
-Public License instead of this License.

ListOfContributors

@@ -0,0 +1,77 @@
+#                            -*- mode: org; -*-
+#
+#+TITLE:          *Cumulative List of Contributors for foam-extend-3.0*
+#+AUTHOR:                      Hrvoje Jasak.
+#+DATE:                       10 January 2014
+#+LINK:                  http://foam-extend.org
+#+OPTIONS: author:nil
+
+################################################################################
+
+Contents:
+* List of Contributors
+
+################################################################################
+
+
+* List of Contributors
+
+    (If your name is missing in the list, please contact the maintainers at 
+    and it will be added asap.)
+
+    Henry Weller
+    Hrvoje Jasak
+    Mattijs Janssens
+    Zeljko Tukovic
+    Bernhard Gschaider
+    Tommaso Lucchini
+    Martin Beaudoin
+    Sandeep Menon
+    Niklas Nordin
+    Eugene De Villiers
+    Henrik Rusche
+    Ivor Clifford
+    Philiposse Rajan
+    Gavin Tabor
+    Jovani Favero
+    Frank Bos
+    David Hill
+    Niklas Wikstrom
+    Dubravko Matijasevic
+    Darrin Stephens
+    Christian Beck
+    Oliver Borm
+    James Criner
+    Hua Shan
+    David Boner
+    Pierre-Olivier Dallaire
+    Norman Del Puppo
+    Dennis Kingsley
+    Frank Albina
+    Flavio Galeazzo
+    Hannes Kroger
+    Olivier Petit
+    David Schmidt
+    Andreas Feymark
+    Luca Mangani
+    Daniel Schmode
+    Christoph Goniva
+    Takuya Oshima
+    Juho Peltola
+    Eric Paterson
+    Fabian Peng Karrholm
+    Aleksandar Karac
+    Maria Garcia Camprubi
+    Chris Greenshields
+    Mark Olesen
+    Hilary Spencer
+    Andy Heather
+    Dominik Christ
+    Peter Janas
+    Niels Linnemann
+    Nikola Kornev
+    Philip Cardiff
+    Declan Carolan
+    Michael Leonard
+    David McAuliffe
+    Tian Tang

README

@@ -1,236 +0,0 @@
-#                            -*- mode: org; -*-
-#
-#+TITLE:             *OpenFOAM README for version 1.6-ext*
-#+AUTHOR:                      Hrvoje Jasak.
-#+DATE:                       12 November 2010
-#+LINK:                    http://www.extend-project.de
-#+OPTIONS: author:nil
-
-* License
-  OpenFOAM is free software; you can redistribute it and/or modify it under the
-  terms of the GNU General Public License as published by the Free Software
-  Foundation; either version 2 of the License, or (at your option) any later
-  version.  See the file COPYING in this directory, for a description of
-  the GNU General Public License terms under which you can copy the files.
-
-* System requirements
-  OpenFOAM is developed and tested on Linux and Mac OS X.
-  Experimental Microsoft Windows port is currently not released - please follow
-  the user forum and annoucements
-
-  * Linux
-  To check your system setup, execute the foamSystemCheck script
-  in the bin/ directory of the OpenFOAM installation. If no problems are
-  reported, proceed to "3. Installation"; otherwise contact your system
-  administrator.
-
-  If the user wishes to run OpenFOAM in 32/64-bit mode they should consult the
-  section "Running OpenFOAM in 32-bit mode".
-
-  * Apple Mac OS X
-  The recommended way of running OpenFOAM on the Mac is to download sparse disk
-  images, mount them on your system and link them into
-
-  ~/OpenFOAM/OpenFOAM-<VERSION>
-  ~/OpenFOAM/ThirdParty-<VERSION>
-
-  Both disk images support case-sensitive file names.  If you wish to compile
-  OpenFOAM and Third Party packs from scratch, please create a case-sensitive
-  disk image using the Disk Utility, mount them as above and unpack the sources
-  at appropriate places.  The remainder of build instructions is identical
-  to Linux.
-
-* Installation
-  Download and unpack the files in the $HOME/OpenFOAM directory as described in:
-  http://www.extend-project.de/
-
-  The environment variable settings are contained in files in an etc/ directory
-  in the OpenFOAM release. e.g. in
-
-  + $HOME/OpenFOAM/OpenFOAM-<VERSION>/etc/
-  + where <VERSION> corresponds to the version 1.6-ext etc
-
-  1) EITHER, if running bash or ksh (if in doubt type 'echo $SHELL'), source the
-    etc/bashrc file by adding the following line to the end of your
-    $HOME/.bashrc file:
-
-    + . $HOME/OpenFOAM/OpenFOAM-<VERSION>/etc/bashrc
-
-    Then update the environment variables by sourcing the $HOME/.bashrc file by
-    typing in the terminal:
-
-    + . $HOME/.bashrc
-
-  2) OR, if running tcsh or csh, source the etc/cshrc file by adding the
-    following line to the end of your $HOME/.cshrc file:
-
-    + source $HOME/OpenFOAM/OpenFOAM-<VERSION>/etc/cshrc
-
-    Then update the environment variables by sourcing the $HOME/.cshrc file by
-    typing in the terminal:
-
-    + source $HOME/.cshrc
-
-*** Installation in alternative locations
-    OpenFOAM may also be installed in alternative locations. However, the
-    installation directory should be network available (e.g., NFS) if parallel
-    calculations are planned.
-
-    The environment variable 'FOAM_INST_DIR' can be used to find and source the
-    appropriate resource file. Here is a bash/ksh/sh example:
-
-    + export FOAM_INST_DIR=/data/app/OpenFOAM
-        + foamDotFile=$FOAM_INST_DIR/OpenFOAM-<VERSION>/etc/bashrc
-        + [ -f $foamDotFile ] && . $foamDotFile
-
-    and a csh/tcsh example:
-
-    + setenv FOAM_INST_DIR /data/app/OpenFOAM
-        + set foamDotFile=$FOAM_INST_DIR/OpenFOAM-<VERSION>/etc/cshrc
-        + if ( -f $foamDotFile ) source $foamDotFile
-
-    The value set in '$FOAM_INST_DIR' will be used to locate the remaining parts
-    of the OpenFOAM installation.
-
-* Building the ThirdParty packages from Sources
-   A new way of compiling and installing the ThirdParty suite of packages is proposed with OpenFOAM-1.6-ext.
-   Please consult the file ThirdParty/README.ThirdParty a for more information.
-
-* Building from Sources (Optional)
-  If you cannot find an appropriate binary pack for your platform, you can
-   build the complete OpenFOAM from the source-pack.  You will first need to
-   compile or obtain a recent version of gcc (we recomend native gcc,
-   coming with your operating system) for your platform,
-  which may be obtained from http://gcc.gnu.org/.
-
-  Install the compiler in
-  $WM_PROJECT_INST_DIR/ThirdParty/gcc-<GCC_VERSION>/platforms/$WM_ARCH$WM_COMPILER_ARCH/
-  and change the gcc version number in $WM_PROJECT_DIR/etc/settings.sh and
-  $WM_PROJECT_DIR/etc/settings.csh appropriately and finally update the
-  environment variables as in section 3.
-
-  Now go to the top-level source directory $WM_PROJECT_DIR and execute the
-  top-level build script './Allwmake'.  In principle this will build everything,
-  but if problems occur with the build order it may be necessary to update the
-  environment variables and re-execute 'Allwmake'. If you experience
-  difficulties with building the source-pack, or your platform is not currently
-  supported, please contact <enquiries@wikki.co.uk> to negotiate a support
-  contract and we will do the port and maintain it for future releases.
-
-* Testing the installation
-  To check your installation setup, execute the 'foamInstallationTest' script
-  (in the bin/ directory of the OpenFOAM installation). If no problems are
-  reported, proceed to getting started with OpenFOAM; otherwise, go back and
-  check you have installed the software correctly and/or contact your system
-  administrator.
-
-* Getting Started
-  Create a project directory within the $HOME/OpenFOAM directory named
-  <USER>-<VERSION> (e.g. 'jasak-1.6-ext' for user jasak and OpenFOAM
-  version 1.6-ext)
-  and create a directory named 'run' within it, e.g. by typing:
-
-  + mkdir -p $HOME/OpenFOAM/${USER}-${WM_PROJECT_VERSION}/run
-
-  Copy the 'tutorial' examples directory in the OpenFOAM distribution to the
-  'run' directory.  If the OpenFOAM environment variables are set correctly,
-  then the following command will be correct:
-
-  + cp -r $WM_PROJECT_DIR/tutorials
-    $HOME/OpenFOAM/${USER}-${WM_PROJECT_VERSION}/run
-
-  Run the first example case of incompressible laminar flow in a cavity:
-
-  + cd $HOME/OpenFOAM/${USER}-${WM_PROJECT_VERSION}/run/tutorials/incompressible/icoFoam/cavity
-  + blockMesh
-  + icoFoam
-  + paraFoam
-
-* Documentation and Community resources
-  http://www.extend-project.de/
-  http://openfoamwiki.net/
-  http://www.cfd-online.com/  Software->OpenFOAM
-
-
-* Reporting Bugs in OpenFOAM
-  Please report all bugs and feature requests using our bug tracking system:
-  http://sourceforge.net/apps/mantisbt/openfoam-extend/main_page.php or
-  http://www.extend-project.de/project-final/openfoam-extend-bug-tracker
-  Please also report bugs at the CFD-Online User Forum.
-
-* Running OpenFOAM in 32-bit mode on 64-bit machines
-  Linux users with a 64-bit machine may install either the OpenFOAM 32-bit
-  version (linux) or the OpenFOAM 64-bit version (linux64), or both.  The 64-bit
-  is the default mode on a 64-bit machine.  To use an installed 32-bit version,
-  the user must set the environment variable $WM_32 (to anything, e.g. "on")
-  before sourcing the etc/bashrc (or etc/cshrc) file.
-
-* Instructions on how to contribute
-  http://www.extend-project.de/project-final/how-to-contribute
-
-* List of Contributors
-    Henry Weller
-    Hrvoje Jasak
-    Mattijs Janssens
-    Zeljko Tukovic
-    Bernhard Gschaider
-    Tommaso Lucchini
-    Martin Beaudoin
-    Sandeep Menon
-    Niklas Nordin
-    Eugene De Villiers
-    Henrik Rusche
-    Ivor Clifford
-    Philiposse Rajan
-    Gavin Tabor
-    Jovani Favero
-    Frank Bos
-    David Hill
-    Niklas Wikstrom
-    Dubravko Matijasevic
-    Darrin Stephens
-    Christian Beck
-    Oliver Borm
-    James Criner
-    Hua Shan
-    David Boner
-    Pierre-Olivier Dallaire
-    Norman Del Puppo
-    Dennis Kingsley
-    Frank Albina
-    Flavio Galeazzo
-    Hannes Kroger
-    Olivier Petit
-    David Schmidt
-    Andreas Feymark
-    Luca Mangani
-    Daniel Schmode
-    Christoph Goniva
-    Takuya Oshima
-    Juho Peltola
-    Eric Paterson
-    Fabian Peng Karrholm
-    Aleksandar Karac
-    Maria Garcia Camprubi
-    Chris Greenshields
-    Mark Olesen
-    Hilary Spencer
-    Andy Heather
-#                            -*- mode: org; -*-
-#
-#+TITLE:             *OpenFOAM README for version 1.6-ext*
-#+AUTHOR:                      Hrvoje Jasak.
-#+DATE:                       12 November 2010
-#+LINK:                    http://www.extend-project.de
-#+OPTIONS: author:nil
-
-* Copyright
-  OpenFOAM is free software; you can redistribute it and/or modify it under the
-  terms of the GNU General Public License as published by the Free Software
-  Foundation; either version 2 of the License, or (at your option) any later
-  version.  See the file COPYING in this directory, for a description of
-  the GNU General Public License terms under which you can copy the files.
-
-* System requirements
-  OpenFOAM is developed and tested on Linux and Mac OS X.
-  E

ReleaseNotes-foam-extend-3.0

@@ -47,9 +47,11 @@ Contents:
     Apple Mac OS X.
 
     ** From source
-        Please refer to doc/buildInstructions/ for details. If you have
+        Please refer to doc/buildInstructions/ for details. Further
-        improvements or build instructions for a new system, please share them 
+        installation instruction are available on the unofficial OpenFOAM Wiki:
-        with the community (see section "How to contribute", below).
+        http://openfoamwiki.net/index.php/Installation/Linux/foam-extend-3.0
+        If you have improvements or build instructions for a new system, please
+        share them with the community (see section "How to contribute", below).
         
     ** Binary packages
         Binary packages are available for download at 
@@ -280,57 +282,4 @@ Contents:
     models; bug fixes; documentation. The many ways of contributing and the 
     contribution process are described in detail in the file "HowToContribute".
 
-* List of Contributors 
+* List of Contributors: See file ListOfContributors
-    (If your name is missing in the list, please contact the maintainers at 
-    and it will be added asap.)
-    Henry Weller
-    Hrvoje Jasak
-    Mattijs Janssens
-    Zeljko Tukovic
-    Bernhard Gschaider
-    Tommaso Lucchini
-    Martin Beaudoin
-    Sandeep Menon
-    Niklas Nordin
-    Eugene De Villiers
-    Henrik Rusche
-    Ivor Clifford
-    Philiposse Rajan
-    Gavin Tabor
-    Jovani Favero
-    Frank Bos
-    David Hill
-    Niklas Wikstrom
-    Dubravko Matijasevic
-    Darrin Stephens
-    Christian Beck
-    Oliver Borm
-    James Criner
-    Hua Shan
-    David Boner
-    Pierre-Olivier Dallaire
-    Norman Del Puppo
-    Dennis Kingsley
-    Frank Albina
-    Flavio Galeazzo
-    Hannes Kroger
-    Olivier Petit
-    David Schmidt
-    Andreas Feymark
-    Luca Mangani
-    Daniel Schmode
-    Christoph Goniva
-    Takuya Oshima
-    Juho Peltola
-    Eric Paterson
-    Fabian Peng Karrholm
-    Aleksandar Karac
-    Maria Garcia Camprubi
-    Chris Greenshields
-    Mark Olesen
-    Hilary Spencer
-    Andy Heather
-    Dominik Christ
-    Peter Janas
-    Niels Linnemann
-    Nikola Kornev

ThirdParty/AllMake.stage3

@@ -87,7 +87,7 @@ fi
 # Mesquite
 if [ -z "$MESQUITE_SYSTEM" ]
 then
-    ( rpm_make -p mesquite-2.1.2 -s mesquite-2.1.2.spec -u http://software.sandia.gov/~jakraft/mesquite-2.1.2.tar.gz                 )
+    ( rpm_make -p mesquite-2.1.2 -s mesquite-2.1.2.spec -u http://downloads.sourceforge.net/project/openfoam-extend/foam-extend-3.0/ThirdParty/mesquite-2.1.2.tar.gz )
 else
     echo "Using system installed Mesquite"
     echo ""

ThirdParty/AllMake.stage4

@@ -56,10 +56,10 @@ echo Starting ThirdParty AllMake: Stage4
 echo ========================================
 echo
 
-# qt-everywhere-opensource-src-4.7.4
+# qt-everywhere-opensource-src-4.8.5
 if [ ! -z "$QT_THIRD_PARTY" ]
 then
-    ( rpm_make -p qt-everywhere-opensource-src-4.7.4 -s qt-everywhere-opensource-src-4.7.4.spec -u http://download.qt-project.org/archive/qt/4.7/qt-everywhere-opensource-src-4.7.4.tar.gz )
+    ( rpm_make -p qt-everywhere-opensource-src-4.8.5 -s qt-everywhere-opensource-src-4.8.5.spec -u http://download.qt-project.org/official_releases/qt/4.8/4.8.5/qt-everywhere-opensource-src-4.8.5.tar.gz )
 else
     echo "Using system installed QT"
     echo ""

ThirdParty/rpmBuild/SOURCES/scotch-6.0.0_patch_darwin

@@ -12,7 +12,7 @@
 +CCS		= gcc
 +CCP		= mpicc
 +CCD		= mpicc
-+CFLAGS		= -O3 -Destrict=__restrict -DCOMMON_RANDOM_FIXED_SEED -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DSCOTCH_RENAME
++CFLAGS		= -O3 -Drestrict=__restrict -DCOMMON_RANDOM_FIXED_SEED -DCOMMON_TIMING_OLD -DCOMMON_FILE_COMPRESS_GZ -DSCOTCH_RENAME
 +CLIBFLAGS	=
 +LDFLAGS		= -lz -lm
 +LIBLDFLAGS	= -dynamiclib -undefined dynamic_lookup 

ThirdParty/rpmBuild/SPECS/mesquite-2.1.2.spec

@@ -75,7 +75,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    http://software.sandia.gov/~jakraft
+URL:                    http://downloads.sourceforge.net/project/openfoam-extend/foam-extend-3.0/ThirdParty/
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/qt-everywhere-opensource-src-4.8.5.spec

@@ -0,0 +1,183 @@
+#------------------------------------------------------------------------------
+# =========                 |
+# \\      /  F ield         | foam-extend: Open Source CFD
+#  \\    /   O peration     |
+#   \\  /    A nd           | For copyright notice see file Copyright
+#    \\/     M anipulation  |
+#------------------------------------------------------------------------------
+# License
+#     This file is part of foam-extend.
+#
+#     foam-extend is free software: you can redistribute it and/or modify it
+#     under the terms of the GNU General Public License as published by the
+#     Free Software Foundation, either version 3 of the License, or (at your
+#     option) any later version.
+#
+#     foam-extend is distributed in the hope that it will be useful, but
+#     WITHOUT ANY WARRANTY; without even the implied warranty of
+#     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+#     General Public License for more details.
+#
+#     You should have received a copy of the GNU General Public License
+#     along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
+#
+# Script
+#     RPM spec file for qt-everywhere-opensource-src-4.8.5
+#
+# Description
+#     RPM spec file for creating a relocatable RPM
+#
+# Author:
+#     Martin Beaudoin, Hydro-Quebec, (2014)
+#
+#------------------------------------------------------------------------------
+
+# We grab the value of WM_THIRD_PARTY and WM_OPTIONS from the environment variable
+%{expand:%%define _WM_THIRD_PARTY_DIR %(echo $WM_THIRD_PARTY_DIR)}
+%{expand:%%define _WM_OPTIONS         %(echo $WM_OPTIONS)}
+
+# Disable the generation of debuginfo packages
+%define debug_package %{nil}
+
+# The topdir needs to point to the $WM_THIRD_PARTY/rpmbuild directory
+%define _topdir	 	%{_WM_THIRD_PARTY_DIR}/rpmBuild
+%define _tmppath	%{_topdir}/tmp
+
+# Will install the package directly $WM_THIRD_PARTY_DIR
+#   Some comments about package relocation:
+#   By using this prefix for the Prefix:  parameter in this file, you will make this
+#   package relocatable.
+#
+#   This is fine, as long as your software is itself relocatable.
+#
+#   Simply take note that libraries built with libtool are not relocatable because the
+#   prefix we specify will be hard-coded in the library .la files.
+#   Ref: http://sourceware.org/autobook/autobook/autobook_80.html
+#
+#   In that case, if you ever change the value of the $WM_THIRD_PARTY_DIR, you will
+#   not be able to reutilize this RPM, even though it is relocatable. You will need to
+#   regenerate the RPM.
+#
+%define _prefix         %{_WM_THIRD_PARTY_DIR}
+
+%define name		qt-everywhere-opensource-src
+%define release		%{_WM_OPTIONS}
+%define version 	4.8.5
+
+%define buildroot       %{_topdir}/BUILD/%{name}-%{version}-root
+
+%define _unpackaged_files_terminate_build  0
+%define _missing_doc_files_terminate_build 0
+
+BuildRoot:	        %{buildroot}
+Summary: 		qt-everywhere-opensource-src
+License: 		Unkown
+Name: 			%{name}
+Version: 		%{version}
+Release: 		%{release}
+URL:                    http://download.qt-project.org/official_releases/qt/4.8/4.8.5
+Source: 		%url/%{name}-%{version}.tar.gz
+Prefix: 		%{_prefix}
+Group: 			Development/Tools
+
+
+%define _installPrefix  %{_prefix}/packages/%{name}-%{version}/platforms/%{_WM_OPTIONS}
+
+%description
+%{summary}
+
+%prep
+%setup -q
+
+%build
+    # export WM settings in a form that GNU configure recognizes
+    [ -n "$WM_CC" ]         &&  export CC="$WM_CC"
+    [ -n "$WM_CXX" ]        &&  export CXX="$WM_CXX"
+    [ -n "$WM_CFLAGS" ]     &&  export CFLAGS="$WM_CFLAGS"
+    [ -n "$WM_CXXFLAGS" ]   &&  export CXXFLAGS="$WM_CXXFLAGS"
+    [ -n "$WM_LDFLAGS" ]    &&  export LDFLAGS="$WM_LDFLAGS"
+
+%ifos darwin
+    #   Under Mac OS X, Qt 4.8 will only compile using the stock native g++ compiler supplied with Xcode.
+    #   If your native Mac OS X g++ compiler is not located under /usr/bin, simply adjust the redefinition of the following variables accordingly.
+    #   This is ugly, I know...
+    export CC=/usr/bin/gcc
+    export CXX=/usr/bin/g++
+    export PATH=/usr/bin:$PATH
+%endif
+
+    ./configure                           \
+        -opensource --confirm-license=yes \
+        -release -shared                  \
+        -nomake examples -nomake demos    \
+        --prefix=%{_installPrefix}
+
+    # Explicitely specify LD_LIBRARY_PATH so it can find QT own libraries
+    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:%{_builddir}/%{name}-%{version}/lib
+
+    [ -z "$WM_NCOMPPROCS" ] && WM_NCOMPPROCS=1
+    make -j $WM_NCOMPPROCS
+
+%install
+    # Makefiles generated by qmake do not to support the DESTDIR= option
+    # We need to use the INSTALL_ROOT= option instead
+
+    # Somehow, we need to clean up for the RPM to install properly
+    rm -rf %{_installPrefix}
+
+    make install INSTALL_ROOT=$RPM_BUILD_ROOT
+
+    # Creation of OpenFOAM specific .csh and .sh files"
+
+    echo ""
+    echo "Generating OpenFOAM specific .csh and .sh files for the package %{name}-%{version}"
+    echo ""
+    #
+    # Generate package specific .sh file for OpenFOAM
+    #
+mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/etc
+cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh
+# Load %{name}-%{version} libraries and binaries if available
+# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+export QT_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
+export QT_BIN_DIR=\$QT_DIR/bin
+export QT_LIB_DIR=\$QT_DIR/lib
+
+# Enable access to the runtime package applications
+[ -d \$QT_BIN_DIR ] && _foamAddPath \$QT_BIN_DIR
+[ -d \$QT_LIB_DIR ] && _foamAddLib  \$QT_LIB_DIR
+DOT_SH_EOF
+
+    #
+    # Generate package specific .csh file for OpenFOAM
+    #
+cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.csh
+# Load %{name}-%{version} libraries and binaries if available
+# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+setenv QT_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
+setenv QT_BIN_DIR \$QT_DIR/bin
+setenv QT_LIB_DIR \$QT_DIR/lib
+
+if ( -e \$QT_BIN_DIR ) then
+    _foamAddPath \$QT_BIN_DIR
+endif
+
+if ( -e \$QT_LIB_DIR ) then
+    _foamAddLib \$QT_LIB_DIR
+endif
+DOT_CSH_EOF
+
+    #finally, generate a .tgz file for systems where using rpm for installing packages
+    # as a non-root user might be a problem.
+    (mkdir -p  %{_topdir}/TGZS/%{_target_cpu}; cd $RPM_BUILD_ROOT/%{_prefix}; tar -zcvf %{_topdir}/TGZS/%{_target_cpu}/%{name}-%{version}.tgz  packages/%{name}-%{version})
+
+
+%clean
+rm -rf %{buildroot}
+
+%files
+%defattr(-,root,root)
+%{_installPrefix}
+
+

applications/solvers/combustion/reactingFoam/reactingFoam.C

@@ -88,8 +88,6 @@ int main(int argc, char *argv[])
             chemistry.dQ()().write();
         }
 
-        runTime.write();
-
         Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
             << "  ClockTime = " << runTime.elapsedClockTime() << " s"
             << nl << endl;

applications/solvers/coupled/Allwmake

@@ -3,6 +3,8 @@ cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 wmake libso conjugateHeatTransfer
-wmake
 
+wmake blockCoupledScalarTransportFoam  
+wmake conjugateHeatFoam
+wmake conjugateHeatSimpleFoam  
 # ----------------------------------------------------------------- end-of-file

applications/solvers/coupled/conjugateHeatFoam/Make/options

@@ -1,5 +1,5 @@
 EXE_INC = \
-    -IconjugateHeatTransfer/lnInclude \
+    -I../conjugateHeatTransfer/lnInclude \
     -I$(LIB_SRC)/turbulenceModels \
     -I$(LIB_SRC)/turbulenceModels/incompressible/RAS/RASModel \
     -I$(LIB_SRC)/turbulenceModels/incompressible/turbulenceModel \

applications/solvers/coupled/conjugateHeatSimpleFoam/Make/options

@@ -1,5 +1,5 @@
 EXE_INC = \
-    -I../conjugateHeatFoam/conjugateHeatTransfer/lnInclude \
+    -I../conjugateHeatTransfer/lnInclude \
     -I$(LIB_SRC)/turbulenceModels \
     -I$(LIB_SRC)/turbulenceModels/incompressible/RAS/RASModel \
     -I$(LIB_SRC)/turbulenceModels/incompressible/turbulenceModel \

applications/solvers/solidMechanics/Allwmake

@@ -20,5 +20,7 @@ wmake elasticThermalSolidFoam
 wmake icoFsiElasticNonLinULSolidFoam
 wmake viscoElasticSolidFoam
 
+wmake stressFemFoam
+
 (cd utilities ; wmake all)
 (cd deprecatedSolvers ; ./Allwmake)

applications/solvers/solidMechanics/deprecatedSolvers/Allwmake

@@ -11,8 +11,6 @@ wmake contactStressFoam
 wmake newStressedFoam
 wmake newContactStressFoam
 
-wmake stressFemFoam
-
 wmake icoFsiFoam
 
 wmake solidDisplacementFoam

applications/solvers/solidMechanics/deprecatedSolvers/stressFemFoam/calculateStress.H

@@ -1,53 +0,0 @@
-    if (runTime.outputTime())
-    {
-        // Displacement gradient
-        tetPointTensorField gradU = tetFec::grad(U);
-
-        // Stress tensor
-        tetPointSymmTensorField sigma =
-            rho*(2.0*mu*symm(gradU) + lambda*I*tr(gradU));
-
-        // sigmaXX
-        tetPointScalarField sigmaXX
-        (
-            IOobject
-            (
-                "sigmaXX",
-                runTime.timeName(),
-                mesh,
-                IOobject::NO_READ,
-                IOobject::AUTO_WRITE
-            ),
-            sigma.component(symmTensor::XX)
-        );
-
-        // sigmaYY
-        tetPointScalarField sigmaYY
-        (
-            IOobject
-            (
-                "sigmaYY",
-                runTime.timeName(),
-                mesh,
-                IOobject::NO_READ,
-                IOobject::AUTO_WRITE
-            ),
-            sigma.component(symmTensor::YY)
-        );
-
-        // sigmaXY
-        tetPointScalarField sigmaXY
-        (
-            IOobject
-            (
-                "sigmaXY",
-                runTime.timeName(),
-                mesh,
-                IOobject::NO_READ,
-                IOobject::AUTO_WRITE
-            ),
-            sigma.component(symmTensor::XY)
-        );
-
-        runTime.write();
-    }

applications/solvers/solidMechanics/elasticIncrSolidFoam/calculateRelativeResidual.H

@@ -16,7 +16,6 @@
             (
                 DU.internalField()
               - DU.prevIter().internalField()
-            )
+            )/magDU
-           /magDU
         );
 }

applications/solvers/solidMechanics/elasticIncrSolidFoam/elasticIncrSolidFoam.C

@@ -79,7 +79,7 @@ int main(int argc, char *argv[])
 
 #           include "calculateDivDSigmaExp.H"
 
-            //- linear momentum equation
+            // Linear momentum equation
             fvVectorMatrix DUEqn
             (
                 fvm::d2dt2(rho, DU)
@@ -127,7 +127,8 @@ int main(int argc, char *argv[])
          && ++iCorr < nCorr
         );
 
-        Info<< nl << "Time " << runTime.value() << ", Solving for " << DU.name()
+        Info<< nl << "Time " << runTime.value()
+            << ", Solving for " << DU.name()
             << ", Initial residual = " << initialResidual
             << ", Final residual = " << solverPerf.initialResidual()
             << ", Relative residual = " << relativeResidual

applications/solvers/solidMechanics/elasticIncrSolidFoam/readDivDSigmaExpMethod.H

@@ -1,9 +1,22 @@
-//- how explicit component of sigma is to be calculated
+    const dictionary& stressControl =
-word divDSigmaExpMethod(mesh.solutionDict().subDict("solidMechanics").lookup("divSigmaExp"));
+        mesh.solutionDict().subDict("solidMechanics");
-Info << "Selecting divSigmaExp calculation method " << divDSigmaExpMethod <<  endl;
+
-if(divDSigmaExpMethod != "standard" && divDSigmaExpMethod != "surface" && divDSigmaExpMethod != "decompose" && divDSigmaExpMethod != "laplacian")
+    // Read how explicit component of sigma is to be calculated
+    word divDSigmaExpMethod(stressControl.lookup("divSigmaExp"));
+
+    Info<< "Selecting divSigmaExp calculation method: "
+        << divDSigmaExpMethod <<  endl;
+
+    if
+    (
+        divDSigmaExpMethod != "standard"
+     && divDSigmaExpMethod != "surface"
+     && divDSigmaExpMethod != "decompose"
+     && divDSigmaExpMethod != "laplacian"
+    )
     {
-    FatalError << "divSigmaExp method " << divDSigmaExpMethod << " not found!" << nl
+        FatalErrorIn(args.executable())
+            << "divSigmaExp method " << divDSigmaExpMethod << " not found!  "
 	        << "valid methods are:\nstandard\nsurface\ndecompose\nlaplacian"
 	        << exit(FatalError);
     }

applications/solvers/solidMechanics/elasticIncrSolidFoam/writeFields.H

@@ -1,5 +1,5 @@
 if (runTime.outputTime())
-  {
+{
     volScalarField epsilonEq
     (
         IOobject
@@ -13,8 +13,7 @@ if (runTime.outputTime())
         sqrt((2.0/3.0)*magSqr(dev(epsilon)))
     );
 
-    Info<< "Max epsilonEq = " << max(epsilonEq).value()
+    Info<< "Max epsilonEq = " << max(epsilonEq).value() << endl;
-	<< endl;
 
     volScalarField sigmaEq
     (
@@ -29,8 +28,7 @@ if (runTime.outputTime())
         sqrt((3.0/2.0)*magSqr(dev(sigma)))
     );
 
-    Info<< "Max sigmaEq = " << max(sigmaEq).value()
+    Info<< "Max sigmaEq = " << max(sigmaEq).value() << endl;
-	<< endl;
 
     runTime.write();
-  }
+}

applications/solvers/solidMechanics/elasticNonLinTLSolidFoam/createFields.H

@@ -29,7 +29,7 @@
         dimensionedSymmTensor("zero", dimless, symmTensor::zero)
     );
 
-    //- second Piola-Kirchhoff stress tensor
+    //- Second Piola-Kirchhoff stress tensor
     volSymmTensorField sigma
     (
         IOobject

applications/solvers/solidMechanics/elasticNonLinTLSolidFoam/elasticNonLinTLSolidFoam.C

@@ -70,33 +70,37 @@ int main(int argc, char *argv[])
       {
           U.storePrevIter();
 
-          surfaceTensorField shearGradU =
+          surfaceTensorField shearGradU
-              ((I - n*n)&fvc::interpolate(gradU));
+          (
+              "shearGradU",
+              (I - sqr(n)) & fvc::interpolate(gradU)
+          );
 
           fvVectorMatrix UEqn
           (
               fvm::d2dt2(rho, U)
            ==
               fvm::laplacian(2*muf + lambdaf, U, "laplacian(DU,U)")
-                  // + fvc::div(
+//             + fvc::div
-                  //         -( (mu + lambda) * gradU )
+//               (
-                  //         + ( mu * gradU.T() )
+//                   -(mu + lambda)*gradU
-                  //         + ( mu * (gradU & gradU.T()) )
+//                   + mu*gradU.T()
-                  //         + ( lambda * tr(gradU) * I )
+//                   + mu*(gradU & gradU.T())
-                  //         + ( 0.5 * lambda * tr(gradU & gradU.T()) * I )
+//                   + lambda*tr(gradU)*I
-                  //         + ( sigma & gradU ),
+//                   + 0.5*lambda*tr(gradU & gradU.T())*I
-                  //         "div(sigma)"
+//                   + (sigma & gradU),
-                  //         )
+//                   "div(sigma)"
-                  + fvc::div(
+//               )
-                      mesh.magSf()
+            + fvc::div
-                      *(
+              (
-                          - (muf + lambdaf)*(fvc::snGrad(U)&(I - n*n))
+                  mesh.magSf()*
-                          + lambdaf*tr(shearGradU&(I - n*n))*n
+                  (
-                          + muf*(shearGradU&n)
+                      - (muf + lambdaf)*(fvc::snGrad(U) & (I - n*n))
-                          + muf * (n & fvc::interpolate(gradU & gradU.T()))
+                      + lambdaf*tr(shearGradU & (I - n*n))*n
-                          + 0.5*lambdaf
+                      + muf*(shearGradU & n)
-                          *(n * tr(fvc::interpolate(gradU & gradU.T())))
+                      + muf*(n & fvc::interpolate(gradU & gradU.T()))
-                          + (n & fvc::interpolate( sigma & gradU ))
+                      + 0.5*lambdaf*(n*tr(fvc::interpolate(gradU & gradU.T())))
+                      + (n & fvc::interpolate(sigma & gradU))
                   )
               )
           );

applications/solvers/solidMechanics/elasticNonLinULSolidFoam/moveMesh.H

@@ -1,15 +1,16 @@
 if(moveMeshMethod == "inverseDistance")
-  {
+{
 #   include "moveMeshInverseDistance.H"
-  }
+}
- else if(moveMeshMethod == "leastSquares")
+else if(moveMeshMethod == "leastSquares")
-   {
+{
 #   include "moveMeshLeastSquares.H"
-   }
+}
- else
+else
-   {
+{
-     FatalError << "move mesh method " << moveMeshMethod << " not recognised" << nl
+    FatalErrorIn(args.executable())
+        << "move mesh method " << moveMeshMethod << " not recognised" << nl
 		<< "available methods are:" << nl
 		<< "inverseDistance" << nl
 		<< "leastSquares" << exit(FatalError);
-   }
+}

applications/solvers/solidMechanics/elasticPlasticNonLinTLSolidFoam/calculateDEpsilonDSigma.H

@@ -1,5 +1,5 @@
-//- Increment of Green finite strain tensor
+// Increment of Green finite strain tensor
 DEpsilon = symm(gradDU) + 0.5*symm((gradDU & gradU.T()) + (gradU & gradDU.T()) + (gradDU & gradDU.T()));
 
-//- Increment of second Piola-Kirchhoff stress tensor
+// Increment of second Piola-Kirchhoff stress tensor
 DSigma = 2*mu*(DEpsilon - DEpsilonP) + lambda*(I*tr(DEpsilon));

applications/solvers/solidMechanics/elasticPlasticNonLinTLSolidFoam/calculateDivDSigmaExp.H

@@ -1,5 +1,5 @@
 if(divDSigmaExpMethod == "standard")
-  {
+{
     divDSigmaExp = fvc::div
     (
         (mu*gradDU.T())
@@ -7,39 +7,40 @@ if(divDSigmaExpMethod == "standard")
       - ((mu + lambda)*gradDU),
         "div(sigma)"
     );
-  }
+}
- else if(divDSigmaExpMethod == "surface")
+else if(divDSigmaExpMethod == "surface")
-   { 
+{ 
-     divDSigmaExp =
+    divDSigmaExp = fvc::div
-       fvc::div(
+    (
-		mesh.magSf()
+        mesh.magSf()*
-		*(
+        (
-		  muf*(n&fvc::interpolate(gradDU.T()))
+            muf*(n & fvc::interpolate(gradDU.T()))
           + lambdaf*tr(fvc::interpolate(gradDU))*n
-		  - (muf + lambdaf)*(n&fvc::interpolate(gradDU))
+          - (muf + lambdaf)*(n & fvc::interpolate(gradDU))
         )
     );
+
      // divDSigmaExp = fvc::div
      //   (
      // 	muf*(mesh.Sf() & fvc::interpolate(gradDU.T()))
      // 	+ lambdaf*(mesh.Sf() & I*fvc::interpolate(tr(gradDU)))
      // 	- (muf + lambdaf)*(mesh.Sf() & fvc::interpolate(gradDU))
      // 	);
-   }
+}
- else if(divDSigmaExpMethod == "decompose")
+else if(divDSigmaExpMethod == "decompose")
-   {
+{
-     surfaceTensorField shearGradDU =
+    surfaceTensorField shearGradDU((I - n*n) & fvc::interpolate(gradDU));
-       ((I - n*n)&fvc::interpolate(gradDU));
      
-     divDSigmaExp =
+    divDSigmaExp = fvc::div
-       fvc::div(
+    (
-		mesh.magSf()
+		mesh.magSf()*
-		*(
+        (
-		  - (muf + lambdaf)*(fvc::snGrad(DU)&(I - n*n))
+		  - (muf + lambdaf)*(fvc::snGrad(DU) & (I - n*n))
-		  + lambdaf*tr(shearGradDU&(I - n*n))*n
+		  + lambdaf*tr(shearGradDU & (I - n*n))*n
-		  + muf*(shearGradDU&n)
+		  + muf*(shearGradDU & n)
         )
     );
+
      // divDSigmaExp = fvc::div
      //   (
      // 	mesh.magSf()
@@ -49,9 +50,9 @@ if(divDSigmaExpMethod == "standard")
      // 	  + muf*(shearGradDU&n)
      // 	  )
      // 	);
-   }
+}
- else if(divDSigmaExpMethod == "laplacian")
+else if(divDSigmaExpMethod == "laplacian")
-   {
+{
     divDSigmaExp =
       - fvc::laplacian(mu + lambda, DU, "laplacian(DDU,DU)")
       + fvc::div
@@ -60,8 +61,10 @@ if(divDSigmaExpMethod == "standard")
           + lambda*(I*tr(gradDU)),
             "div(sigma)"
         );
-   }
+}
- else
+else
-   {
+{
-     FatalError << "divDSigmaExp method " << divDSigmaExpMethod << " not found!" << endl;
+    FatalErrorIn(args.executable())
-   }
+        << "divDSigmaExp method " << divDSigmaExpMethod << " not found!"
+        << abort(FatalError);
+}

applications/solvers/solidMechanics/elasticPlasticNonLinTLSolidFoam/calculateDivDSigmaNonLinExp.H

@@ -1,30 +1,67 @@
 if(divDSigmaNonLinExpMethod == "standard")
-  {
+{
     divDSigmaNonLinExp = fvc::div
     (
-       ( mu * (
+        (
+            mu*
+            (
                 (gradDU & gradU.T())
               + (gradU & gradDU.T())
               + (gradDU & gradDU.T())
-	       ) )
+	        )
-       + ( lambda * 0.5 * tr( (gradDU & gradU.T())
+        )
+      + (
+            0.5*lambda*
+            tr
+            (
+                (gradDU & gradU.T())
               + (gradU & gradDU.T())
               + (gradDU & gradDU.T())
-			      ) * I )
+            )*I
-       + ( DSigma & gradU )
+        )
-       + ( (sigma + DSigma) & gradDU ),
+      + (DSigma & gradU)
+      + ((sigma + DSigma) & gradDU),
         "div(sigma)"
     );
-  }
+}
- else if(divDSigmaNonLinExpMethod == "surface")
+else if(divDSigmaNonLinExpMethod == "surface")
-   { 
+{ 
-     divDSigmaNonLinExp =
+     divDSigmaNonLinExp = fvc::div
-       fvc::div(
+     (
-		mesh.magSf()
+         mesh.magSf()*
-		*(
+         (
-		  ( muf * (n & fvc::interpolate( (gradU & gradDU.T()) + (gradDU & gradU.T()) + (gradDU & gradDU.T()) )) )
+             (
-		  + ( 0.5*lambdaf * (n * tr(fvc::interpolate( (gradU & gradDU.T()) + (gradDU & gradU.T()) + (gradDU & gradDU.T()) ))) )
+                 muf*
-		  + (n & fvc::interpolate( (DSigma & gradU) + ((sigma + DSigma) & gradDU) ))
+                 (
+                     n & fvc::interpolate
+                     (
+                         (gradU & gradDU.T())
+                       + (gradDU & gradU.T())
+                       + (gradDU & gradDU.T())
+                     )
+                 )
+             )
+           + (
+                 0.5*lambdaf*
+                 (
+                     n*tr
+                     (
+                         fvc::interpolate
+                         (
+                             (gradU & gradDU.T())
+                           + (gradDU & gradU.T())
+                           + (gradDU & gradDU.T())
+                         )
+                     )
+                 )
+             )
+           + (
+                 n & fvc::interpolate
+                 (
+                     (DSigma & gradU)
+                   + ((sigma + DSigma) & gradDU)
+                 )
+             )
          )
      );
 
@@ -48,8 +85,10 @@ if(divDSigmaNonLinExpMethod == "standard")
      // 					 + ( (sigma + DSigma) & gradDU )
      // 					 ) )
      // 	);
-   }
+}
- else
+else
-   {
+{
-     FatalError << "divDSigmaExp method " << divDSigmaExpMethod << " not found!" << endl;
+       FatalErrorIn(args.executable())
-   }
+           << "divDSigmaExp method " << divDSigmaExpMethod << " not found!"
+           << abort(FatalError);
+}

applications/solvers/solidMechanics/elasticPlasticNonLinTLSolidFoam/elasticPlasticNonLinTLSolidFoam.C

@@ -66,7 +66,7 @@ int main(int argc, char *argv[])
       scalar initialResidual = 0;
       lduMatrix::solverPerformance solverPerf;
       scalar relativeResidual = GREAT;
-      lduMatrix::debug=0;
+      lduMatrix::debug = 0;
 
       do
       {
@@ -88,7 +88,7 @@ int main(int argc, char *argv[])
           //- fvc::div(2*mu*DEpsilonP, "div(sigma)")
             - fvc::div
               (
-                        2*muf*( mesh.Sf() & fvc::interpolate(DEpsilonP))
+                  2*muf*(mesh.Sf() & fvc::interpolate(DEpsilonP))
               )
           );
 
@@ -108,7 +108,7 @@ int main(int argc, char *argv[])
                   (
                       (2*mu + lambda)*gradU, DU, "laplacian(DDU,DU)"
                   )
-                    - fvc::div( (2*mu + lambda)*(gradU&gradDU), "div(sigma)");
+                - fvc::div((2*mu + lambda)*(gradU & gradDU), "div(sigma)");
           }
 
           if (nonLinearSemiImplicit)
@@ -123,7 +123,7 @@ int main(int argc, char *argv[])
                   (
                       (2*mu + lambda)*gradDU, DU, "laplacian(DDU,DU)"
                   )
-                    - fvc::div( (2*mu + lambda)*(gradDU&gradDU), "div(sigma)");
+                - fvc::div((2*mu + lambda)*(gradDU & gradDU), "div(sigma)");
           }
 
           solverPerf = DUEqn.solve();
@@ -152,12 +152,13 @@ int main(int argc, char *argv[])
 
           if (iCorr % infoFrequency == 0)
           {
-                Info << "\tTime " << runTime.value()
+              Info<< "\tTime " << runTime.value()
                   << ", Corrector " << iCorr
                   << ", Solving for " << DU.name()
                   << " using " << solverPerf.solverName()
                   << ", res = " << solverPerf.initialResidual()
                   << ", rel res = " << relativeResidual;
+
               if (aitkenRelax)
               {
                   Info << ", aitken = " << aitkenTheta;
@@ -169,10 +170,11 @@ int main(int argc, char *argv[])
       (
           iCorr++ == 0
        ||
-              (//solverPerf.initialResidual() > convergenceTolerance
+          (
+              //solverPerf.initialResidual() > convergenceTolerance
               relativeResidual > convergenceTolerance
-                  &&
+           && iCorr < nCorr
-                  iCorr < nCorr)
+          )
       );
 
       Info<< nl << "Time " << runTime.value() << ", Solving for " << DU.name()