Project update

ThirdParty/AllMake.stage4

@@ -68,9 +68,6 @@ fi
 # Paraview
 if [ -z "$PARAVIEW_SYSTEM" ] 
 then
-     # Make sure we get the value of QT_BIN_DIR initialized
-     . $WM_PROJECT_DIR/etc/settings.sh
-
     if [ -d "$QT_BIN_DIR" -a -r "$QT_BIN_DIR"/qmake ]
     then
         ( rpm_make -p ParaView-3.12.0 -s ParaView-3.12.0.spec -u http://www.paraview.org/files/v3.12/ParaView-3.12.0.tar.gz \

ThirdParty/rpmBuild/SPECS/ParaView-3.12.0.spec

@@ -153,7 +153,7 @@ Patch0:                 ParaView-3.12.0.patch_darwin
     addCMakeVariable  PARAVIEW_INSTALL_DEVELOPMENT:BOOL=ON
 
     # new alternative to "make HTMLDocumentation"
-    addCMakeVariable  PARAVIEW_GENERATE_PROXY_DOCUMENTATION:BOOL=ON
+    addCMakeVariable  PARAVIEW_GENERATE_PROXY_DOCUMENTATION:BOOL=OFF
 
  %ifos darwin
     # Additional installation rules for Mac OS X 
@@ -206,7 +206,7 @@ cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh
 export PARAVIEW_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
 export PARAVIEW_BIN_DIR=\$PARAVIEW_DIR/bin
 export PARAVIEW_LIB_DIR=\$PARAVIEW_DIR/lib
-export PARAVIEW_INCLUDE_DIR=\$PARAVIEW_DIR/include
+export PARAVIEW_INCLUDE_DIR=\$PARAVIEW_DIR/include/paraview-3.12
 
 export PARAVIEW_VERSION=%{version}
 
@@ -236,7 +236,7 @@ cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.cs
 setenv PARAVIEW_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS
 setenv PARAVIEW_BIN_DIR \$PARAVIEW_DIR/bin
 setenv PARAVIEW_LIB_DIR \$PARAVIEW_DIR/lib
-setenv PARAVIEW_INCLUDE_DIR \$PARAVIEW_DIR/include
+setenv PARAVIEW_INCLUDE_DIR \$PARAVIEW_DIR/include/paraview-3.12
 
 setenv PARAVIEW_VERSION %{version}
 

ThirdParty/rpmBuild/SPECS/PyFoam-0.5.6.spec

@@ -110,7 +110,7 @@ cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 export PYFOAM_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
-export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 # Enable access to the package applications if present
 [ -d \$PYFOAM_DIR/bin ] && _foamAddPath \$PYFOAM_DIR/bin
@@ -125,16 +125,12 @@ cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.cs
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 setenv PYFOAM_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
 
-setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 if ( -e \$PYFOAM_DIR/bin ) then
     _foamAddPath \$PYFOAM_DIR/bin
 endif
 
-if ( -e \$PYFOAM_SITE_DIR/bin ) then
-    _foamAddPath \$PYFOAM_SITE_DIR/bin
-endif
-
 DOT_CSH_EOF
 
 cat << DOT_HARDCODED_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}_hardcoded.sh
@@ -146,7 +142,7 @@ cat << DOT_HARDCODED_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{ve
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 export PYFOAM_DIR=$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
-export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 # Enable access to the package applications if present
 [ -d \$PYFOAM_DIR/bin ] && export PATH=\$PYFOAM_DIR/bin:\$PATH
@@ -165,7 +161,7 @@ cat << DOT_HARDCODED_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{v
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 setenv PYFOAM_DIR $WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
 
-setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 if ( -e \$PYFOAM_DIR/bin ) then
     setenv PATH \$PYFOAM_DIR/bin:\$PATH

ThirdParty/rpmBuild/SPECS/PyFoam-0.5.7.spec

@@ -110,7 +110,7 @@ cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 export PYFOAM_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
-export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 # Enable access to the package applications if present
 [ -d \$PYFOAM_DIR/bin ] && _foamAddPath \$PYFOAM_DIR/bin
@@ -125,16 +125,12 @@ cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.cs
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 setenv PYFOAM_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
 
-setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 if ( -e \$PYFOAM_DIR/bin ) then
     _foamAddPath \$PYFOAM_DIR/bin
 endif
 
-if ( -e \$PYFOAM_SITE_DIR/bin ) then
-    _foamAddPath \$PYFOAM_SITE_DIR/bin
-endif
-
 DOT_CSH_EOF
 
 cat << DOT_HARDCODED_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}_hardcoded.sh
@@ -146,7 +142,7 @@ cat << DOT_HARDCODED_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{ve
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 export PYFOAM_DIR=$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
-export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+export PYTHONPATH=\$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 # Enable access to the package applications if present
 [ -d \$PYFOAM_DIR/bin ] && export PATH=\$PYFOAM_DIR/bin:\$PATH
@@ -165,7 +161,7 @@ cat << DOT_HARDCODED_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{v
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 setenv PYFOAM_DIR $WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/noarch
 
-setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages:\$PYTHONPATH
+setenv PYTHONPATH \$PYFOAM_DIR/lib/python%{pythonVersion}/site-packages
 
 if ( -e \$PYFOAM_DIR/bin ) then
     setenv PATH \$PYFOAM_DIR/bin:\$PATH

ThirdParty/rpmBuild/SPECS/mesquite-2.1.2.spec

@@ -77,6 +77,7 @@ URL:                    http://software.sandia.gov/~jakraft
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools
+Patch0:         mesquite-2.1.2.patch
 
 %define _installPrefix  %{_prefix}/packages/%{name}-%{version}/platforms/%{_WM_OPTIONS}
 
@@ -86,6 +87,8 @@ Group: 			Development/Tools
 %prep
 %setup -q
 
+%patch0 -p0
+
 %build
     # export WM settings in a form that GNU configure recognizes
     [ -n "$WM_CC" ]         &&  export CC="$WM_CC"

ThirdParty/tools/makeThirdPartyFunctionsForRPM

@@ -59,9 +59,8 @@ rpm_make()
     _SPECFILE=''
     _PACKAGE_URL=''
     _ADDITIONALFLAGS=''
-    _RPMFILENAME=''
 
-    while getopts p:s:u:f:n:a: flags
+    while getopts p:s:u:a: flags
       do
       case $flags in
 	  p)  _PACKAGE=$OPTARG
@@ -70,11 +69,7 @@ rpm_make()
 	      ;;
 	  s)  _SPECFILE=$OPTARG
 	      ;;
-	  f)  _ADDITIONALFLAGS=$OPTARG
+	  a)  _ADDITIONALFLAGS=$OPTARG
-	      ;;
-	  n)  _RPMFILENAME=$OPTARG
-	      ;;
-	  a)  architecture=$OPTARG
 	      ;;
       esac
     done
@@ -87,21 +82,9 @@ rpm_make()
     # Shift options
     shift `expr $OPTIND - 1`
 
-    # Make sure the ThirdParty environment is up-to-date
-    echo "Updating the ThirdParty environment variables before building package $_PACKAGE" 
-    . $WM_PROJECT_DIR/etc/settings.sh
-
-    if [ "$_RPMFILENAME" = "" ]; then
     rpmName=$_PACKAGE-$WM_OPTIONS.$architecture
-    else
-	# Filename for the RPM was overridden from the command line
-	rpmName=$_RPMFILENAME
-    fi
-
     rpmFile=$buildBase/RPMS/$architecture/$rpmName.rpm
 
-    echo "RPM file name     : $rpmFile"
-
     # We check immediatly if the RPM binary package is available in the local RPMs vault.
     # If so, we basically uninstall/reinstall the package. This is handy for installation
     # on machines with no Internet access, so without downloading capabilities. If one wants to
@@ -130,16 +113,10 @@ rpm_make()
     fi
 
     # Install RPM package if not done already
-    if [ "$architecture" = "noarch" ]; then
+    if [ ! -e "$WM_THIRD_PARTY_DIR/packages/$_PACKAGE/platforms/$WM_OPTIONS" ]; then
-	installDir=$WM_THIRD_PARTY_DIR/packages/$_PACKAGE/platforms/noarch
-    else
-	installDir=$WM_THIRD_PARTY_DIR/packages/$_PACKAGE/platforms/$WM_OPTIONS
-    fi
-
-    if [ ! -e "$installDir" ]; then
         echo "Installing package: $_PACKAGE"
-        rpm_uninstall $_PACKAGE $rpmName
+        rpm_uninstall $_PACKAGE
-        rpm_install   $_PACKAGE $rpmName $rpmFile
+        rpm_install   $_PACKAGE
     else
         echo "Package $_PACKAGE is already installed"
     fi
@@ -148,7 +125,6 @@ rpm_make()
     unset _SPECFILE
     unset _PACKAGE_URL
     unset _ADDITIONALFLAGS
-    unset _RPMFILENAME
 
     echo "Done installing package $_PACKAGE"
     echo ""
@@ -166,8 +142,8 @@ rpm_build()
     cd $buildBase
 
     [ -e ./SPECS/$specFile ] || {
-        echo "rpm_build: Error: missing SPEC file for package $package. Aborting."
+        echo "rpm_build: missing SPEC file for package $package. Aborting."
-        exit -1
+        return 1
     }
 
     #Build RPM package
@@ -184,7 +160,7 @@ rpm_build()
 rpm_uninstall()
 {
     package="$1"
-    rpmName="$2"
+    rpmName=$package-$WM_OPTIONS.$architecture
 
     cd $buildBase
 
@@ -204,13 +180,14 @@ rpm_uninstall()
 rpm_install()
 {
     package="$1";
-    rpmName="$2";
+    rpmName=$package-$WM_OPTIONS.$architecture;
-    rpmFile="$3";
+    rpmFile=$buildBase/RPMS/$architecture/$rpmName.rpm;
 
     echo "  Installing $package using RPM file: $rpmFile";
     ${RPM_CMD} ${RPM_CMD_XTRA_OPTIONS} -ivh              \
 	$rpmFile          \
 	--dbpath $buildBase/rpmDB --force --nodeps;
+
 }
 
 #

applications/solvers/basic/potentialFoam/createFields.H

@@ -12,8 +12,7 @@
         mesh
     );
 
-    p = dimensionedScalar("zero", p.dimensions(), 0.0);
+    p.internalField() = 0;
-
 
     Info<< "Reading field U\n" << endl;
     volVectorField U
@@ -29,7 +28,7 @@
         mesh
     );
 
-    U = dimensionedVector("0", U.dimensions(), vector::zero);
+    U.internalField() = vector::zero;
 
     surfaceScalarField phi
     (

applications/solvers/combustion/PDRFoam/Make/options

@@ -29,4 +29,5 @@ EXE_LIBS = \
     -llaminarFlameSpeedModels \
     -lfiniteVolume \
     -ldynamicFvMesh \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/combustion/XiFoam/Make/options

@@ -19,4 +19,5 @@ EXE_LIBS = \
     -llaminarFlameSpeedModels \
     -lfiniteVolume \
     -lmeshTools \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/combustion/coldEngineFoam/Make/options

@@ -16,4 +16,5 @@ EXE_LIBS = \
     -lbasicThermophysicalModels \
     -lspecie \
     -lfiniteVolume \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/combustion/dieselEngineFoam/Make/options

@@ -34,4 +34,5 @@ EXE_LIBS = \
     -lchemistryModel \
     -lODE \
     -lpdf \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/combustion/engineFoam/Make/options

@@ -18,4 +18,5 @@ EXE_LIBS = \
     -lspecie \
     -llaminarFlameSpeedModels \
     -lfiniteVolume \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/coupled/blockCoupledScalarTransportFoam/blockVector2Solvers.C

@@ -113,6 +113,7 @@ addSolverToBlockMatrix(Vector2, blockCGSolverVector2, symMatrix);
 typedef BlockGaussSeidelSolver<vector2> blockGaussSeidelSolverVector2;
 makeBlockSolverTypeName(blockGaussSeidelSolverVector2);
 addSolverToBlockMatrix(Vector2, blockGaussSeidelSolverVector2, symMatrix);
+addSolverToBlockMatrix(Vector2, blockGaussSeidelSolverVector2, asymMatrix);
 
 typedef BlockGMRESSolver<vector2> blockGMRESSolverVector2;
 makeBlockSolverTypeName(blockGMRESSolverVector2);

applications/solvers/engine/icoDyMEngineFoam/Make/options

@@ -14,4 +14,5 @@ EXE_LIBS = \
     -lmeshTools \
     -lfiniteVolume \
     $(WM_DECOMP_LIBS) \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/engine/sonicTurbDyMEngineFoam/Make/options

@@ -20,4 +20,5 @@ EXE_LIBS = \
     -lspecie \
     -lmeshTools \
     $(WM_DECOMP_LIBS) \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/engine/turbDyMEngineFoam/Make/options

@@ -21,4 +21,5 @@ EXE_LIBS = \
     -lincompressibleTransportModels \
     -lfiniteVolume \
     $(WM_DECOMP_LIBS) \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/incompressible/icoDyMFoam/Make/options

@@ -10,4 +10,5 @@ EXE_LIBS = \
     -lengine \
     -lmeshTools \
     -lfiniteVolume \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/incompressible/icoDyMSimpleFoam/Make/options

@@ -10,4 +10,5 @@ EXE_LIBS = \
     -lengine \
     -lmeshTools \
     -lfiniteVolume \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/incompressible/pimpleDyMFoam/Make/options

@@ -17,4 +17,5 @@ EXE_LIBS = \
     -lincompressibleRASModels \
     -lincompressibleLESModels \
     -lfiniteVolume \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/multiphase/compressibleInterDyMFoam/Make/options

@@ -18,5 +18,6 @@ EXE_LIBS = \
     -ldynamicMesh \
     -lmeshTools \
     -ldynamicFvMesh \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite
 

applications/solvers/multiphase/interDyMFoam/Make/options

@@ -20,4 +20,5 @@ EXE_LIBS = \
     -lmeshTools \
     -ldynamicFvMesh \
     -ltopoChangerFvMesh \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/multiphase/interPhaseChangeFoam/pEqn.H

@@ -11,7 +11,7 @@
       + fvc::ddtPhiCorr(rUA, rho, U, phi)
     );
 
-    adjustPhi(phiU, U, p);
+    adjustPhi(phiU, U, pd);
 
     phi = phiU +
         (

applications/solvers/stressAnalysis/icoFsiFoam/Make/options

@@ -12,4 +12,5 @@ EXE_LIBS = \
     -ldynamicFvMesh \
     -ldynamicMesh \
     $(WM_DECOMP_LIBS) \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/surfaceTracking/bubbleInterTrackFoam/Make/options

@@ -13,4 +13,5 @@ EXE_LIBS = \
     -lmeshTools \
     -lfiniteVolume \
     -lfiniteArea \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/solvers/surfaceTracking/interTrackFoam/Make/options

@@ -13,4 +13,5 @@ EXE_LIBS = \
     -lmeshTools \
     -lfiniteVolume \
     -lfiniteArea \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/mesh/generation/snappyHexMesh/Make/options

@@ -14,4 +14,5 @@ EXE_LIBS = \
     -lmeshTools \
     -ldynamicMesh \
     -ldynamicFvMesh \
-    -lautoMesh
+    -lautoMesh \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/mesh/manipulation/moveDyMEngineMesh/Make/options

@@ -14,4 +14,5 @@ EXE_LIBS = \
     -lengine \
     -lmeshTools \
     $(WM_DECOMP_LIBS) \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/mesh/manipulation/moveDyMEngineMesh/moveDyMEngineMesh.C

@@ -36,12 +36,6 @@ Author
 #include "fvCFD.H"
 #include "engineTime.H"
 #include "engineTopoChangerMesh.H"
-<<<<<<< HEAD
-=======
-#include "OFstream.H"
-
-using namespace Foam;
->>>>>>> parallelTopo
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 // Main program:

applications/utilities/mesh/manipulation/moveDynamicMesh/Make/options

@@ -10,4 +10,5 @@ EXE_LIBS = \
     -ldynamicMesh \
     -lengine \
     -lmeshTools \
-    -llduSolvers
+    -llduSolvers \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/mesh/manipulation/moveEngineMesh/Make/options

@@ -5,4 +5,5 @@ EXE_INC = \
 EXE_LIBS = \
     -lfiniteVolume \
     -lengine \
-    -ldynamicMesh
+    -ldynamicMesh \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/miscellaneous/foamDebugSwitches/Make/options

@@ -41,4 +41,5 @@ EXE_LIBS = \
     -lthermophysicalFunctions \
     -ltopoChangerFvMesh \
     -ltriSurface \
-    -lautoMesh
+    -lautoMesh \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/parallelProcessing/redistributeMeshPar/Make/options

@@ -10,4 +10,5 @@ EXE_LIBS = \
     -ldecompositionMethods \
     -lmeshTools \
     -ldynamicMesh \
-    -ldynamicFvMesh
+    -ldynamicFvMesh \
+    -L$(MESQUITE_LIB_DIR) -lmesquite

applications/utilities/postProcessing/miscellaneous/engineCompRatio/Make/options

@@ -5,4 +5,6 @@ EXE_INC = \
 EXE_LIBS = \
     -lfiniteVolume \
     -lengine \
-    -ldynamicMesh
+    -ldynamicMesh \
+    -L$(MESQUITE_LIB_DIR) -lmesquite
+

applications/utilities/postProcessing/stressField/calcPTot/Make/options

@@ -7,6 +7,4 @@ EXE_INC = \
 EXE_LIBS = \
     -lfiniteVolume \
     -linterfaceProperties \
-    -lincompressibleTransportModels \
+    -lincompressibleTransportModels
-    -ldynamicFvMesh \
-    -llduSolvers

applications/utilities/postProcessing/stressField/interFoamPressure/Make/options

@@ -8,5 +8,4 @@ EXE_LIBS = \
     -lfiniteVolume \
     -linterfaceProperties \
     -lincompressibleTransportModels \
-    -ldynamicFvMesh \
     -llduSolvers

applications/utilities/surface/surfaceTransformPoints/Make/files

@@ -1,4 +1,3 @@
-
 surfaceTransformPoints.C
 
 EXE = $(FOAM_APPBIN)/surfaceTransformPoints

etc/cshrc

@@ -79,8 +79,10 @@ alias _foamSource 'if ($?FOAM_VERBOSE && $?prompt) echo "Sourcing: \!*"; source
 # Add in preset user or site preferences:
 set foamPrefs=`$WM_PROJECT_DIR/bin/foamEtcFile prefs.csh`
 if ( $status == 0 ) then
+    if ($foamPrefs) then
         _foamSource $foamPrefs
      endif
+endif
 unset foamPrefs
 
 # Evaluate command-line parameters
@@ -127,7 +129,7 @@ if ( ! $?WM_PRECISION_OPTION ) setenv WM_PRECISION_OPTION DP
 
 # WM_COMPILE_OPTION = Opt | Debug | Prof
 if ( ! $?WM_COMPILE_OPTION ) setenv WM_COMPILE_OPTION Opt
-#setenv WM_COMPILE_OPTION Opt
+setenv WM_COMPILE_OPTION Opt
 #setenv WM_COMPILE_OPTION Debug
 
 # WM_MPLIB = | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI

etc/settings.csh

@@ -425,8 +425,8 @@ endif
 
 # cmake
 # ~~~~~
-if ( $?CMAKE_SYSTEM == 0 && -e "$WM_THIRD_PARTY_DIR"/packages/cmake-2.8.5/platforms/$WM_OPTIONS ) then
+if ( $?CMAKE_SYSTEM == 0 && -e "$WM_THIRD_PARTY_DIR"/packages/cmake-2.8.6/platforms/$WM_OPTIONS ) then
-    _foamSource $WM_THIRD_PARTY_DIR/packages/cmake-2.8.5/platforms/$WM_OPTIONS/etc/cmake-2.8.5.csh
+    _foamSource $WM_THIRD_PARTY_DIR/packages/cmake-2.8.6/platforms/$WM_OPTIONS/etc/cmake-2.8.6.csh
 endif
 
 # Python
@@ -437,7 +437,7 @@ endif
 
 # PyFoam
 # ~~~~~~
-if ( $?PYFOAM_SYSTEM == 0 && -e "$WM_THIRD_PARTY_DIR"/packages/PyFoam-0.5.7 ) then
+if ( $?PYFOAM_SYSTEM == 0 && -e "$WM_THIRD_PARTY_DIR"/packages/PyFoam-0.5.7/platforms/noarch ) then
     _foamSource $WM_THIRD_PARTY_DIR/packages/PyFoam-0.5.7/platforms/noarch/etc/PyFoam-0.5.7.csh
 endif
 

src/OpenFOAM/Make/files

@@ -277,6 +277,7 @@ $(GAMGInterfaces)/cyclicGAMGInterface/cyclicGAMGInterface.C
 $(GAMGInterfaces)/ggiGAMGInterface/ggiGAMGInterface.C
 $(GAMGInterfaces)/cyclicGgiGAMGInterface/cyclicGgiGAMGInterface.C
 $(GAMGInterfaces)/regionCoupleGAMGInterface/regionCoupleGAMGInterface.C
+$(GAMGInterfaces)/mixingPlaneGAMGInterface/mixingPlaneGAMGInterface.C
 
 GAMGInterfaceFields = $(GAMG)/interfaceFields
 $(GAMGInterfaceFields)/GAMGInterfaceField/GAMGInterfaceField.C

src/OpenFOAM/algorithms/octree/indexedOctree/indexedOctree.C

@@ -155,14 +155,14 @@ void Foam::indexedOctree<Type>::divide
 ) const
 {
     List<DynamicList<label> > subIndices(8);
-    for (direction octant = 0; octant < subIndices.size(); octant++)
+    for (label octant = 0; octant < subIndices.size(); octant++)
     {
         subIndices[octant].setCapacity(indices.size()/8);
     }
 
     // Precalculate bounding boxes.
     FixedList<treeBoundBox, 8> subBbs;
-    for (direction octant = 0; octant < subBbs.size(); octant++)
+    for (label octant = 0; octant < subBbs.size(); octant++)
     {
         subBbs[octant] = bb.subBbox(octant);
     }
@@ -171,7 +171,7 @@ void Foam::indexedOctree<Type>::divide
     {
         label shapeI = indices[i];
 
-        for (direction octant = 0; octant < 8; octant++)
+        for (label octant = 0; octant < 8; octant++)
         {
             if (shapes_.overlaps(shapeI, subBbs[octant]))
             {
@@ -181,7 +181,7 @@ void Foam::indexedOctree<Type>::divide
     }
 
     result.setSize(8);
-    for (direction octant = 0; octant < subIndices.size(); octant++)
+    for (label octant = 0; octant < subIndices.size(); octant++)
     {
         result[octant].transfer(subIndices[octant]);
     }
@@ -225,7 +225,7 @@ Foam::indexedOctree<Type>::divide
     // Append the rest.
     bool replaced = false;
 
-    for (direction octant = 0; octant < dividedIndices.size(); octant++)
+    for (label octant = 0; octant < dividedIndices.size(); octant++)
     {
         labelList& subIndices = dividedIndices[octant];
 
@@ -276,7 +276,7 @@ void Foam::indexedOctree<Type>::splitNodes
     {
         for
         (
-            direction octant = 0;
+            label octant = 0;
             octant < nodes[nodeI].subNodes_.size();
             octant++
         )
@@ -303,7 +303,8 @@ void Foam::indexedOctree<Type>::splitNodes
                     subNode.parent_ = nodeI;
                     label sz = nodes.size();
                     nodes.append(subNode);
-                    nodes[nodeI].subNodes_[octant] = nodePlusOctant(sz, octant);
+                    nodes[nodeI].subNodes_[octant] =
+                        nodePlusOctant(sz, octant);
                 }
             }
         }
@@ -332,7 +333,7 @@ Foam::label Foam::indexedOctree<Type>::compactContents
 
     if (level < compactLevel)
     {
-        for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+        for (label octant = 0; octant < nod.subNodes_.size(); octant++)
         {
             labelBits index = nod.subNodes_[octant];
 
@@ -354,7 +355,7 @@ Foam::label Foam::indexedOctree<Type>::compactContents
     else if (level == compactLevel)
     {
         // Compact all content on this level
-        for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+        for (label octant = 0; octant < nod.subNodes_.size(); octant++)
         {
             labelBits index = nod.subNodes_[octant];
 
@@ -394,7 +395,7 @@ Foam::indexedOctree<Type>::calcVolumeType
 
     volumeType myType = UNKNOWN;
 
-    for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+    for (label octant = 0; octant < nod.subNodes_.size(); octant++)
     {
         volumeType subType;
 
@@ -451,7 +452,7 @@ Foam::indexedOctree<Type>::getVolumeType
 {
     const node& nod = nodes_[nodeI];
 
-    direction octant = nod.bb_.subOctant(sample);
+    label octant = nod.bb_.subOctant(sample);
 
     volumeType octantType = volumeType(nodeTypes_.get((nodeI<<3)+octant));
 
@@ -1268,7 +1269,7 @@ bool Foam::indexedOctree<Type>::walkToParent
     // Find octant nodeI is in.
     parentOctant = 255;
 
-    for (direction i = 0; i < parentNode.subNodes_.size(); i++)
+    for (label i = 0; i < parentNode.subNodes_.size(); i++)
     {
         labelBits index = parentNode.subNodes_[i];
 
@@ -2020,7 +2021,7 @@ void Foam::indexedOctree<Type>::findBox
     const node& nod = nodes_[nodeI];
     const treeBoundBox& nodeBb = nod.bb_;
 
-    for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+    for (label octant = 0; octant < nod.subNodes_.size(); octant++)
     {
         labelBits index = nod.subNodes_[octant];
 
@@ -2072,7 +2073,7 @@ Foam::label Foam::indexedOctree<Type>::countElements
 
         const node& nod = nodes_[nodeI];
 
-        for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+        for (label octant = 0; octant < nod.subNodes_.size(); octant++)
         {
             nElems += countElements(nod.subNodes_[octant]);
         }
@@ -2583,7 +2584,7 @@ void Foam::indexedOctree<Type>::print
         << "parent:" << nod.parent_ << nl
         << "n:" << countElements(nodePlusOctant(nodeI, 0)) << nl;
 
-    for (direction octant = 0; octant < nod.subNodes_.size(); octant++)
+    for (label octant = 0; octant < nod.subNodes_.size(); octant++)
     {
         const treeBoundBox subBb(bb.subBbox(octant));
 

src/OpenFOAM/fields/GeometricFields/GeometricField/GeometricBoundaryField.C

@@ -357,7 +357,8 @@ types() const
 
 
 template<class Type, template<class> class PatchField, class GeoMesh>
-typename Foam::GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField
+typename
+Foam::GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField
 Foam::GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::
 boundaryInternalField() const
 {
@@ -402,7 +403,10 @@ typename Foam::BlockLduInterfaceFieldPtrsList<Type>::Type
 Foam::GeometricField<Type, PatchField, GeoMesh>::GeometricBoundaryField::
 blockInterfaces() const
 {
-    typename BlockLduInterfaceFieldPtrsList<Type>::Type interfaces(this->size());
+    typename BlockLduInterfaceFieldPtrsList<Type>::Type interfaces
+    (
+        this->size()
+    );
 
     forAll (interfaces, patchi)
     {
@@ -411,7 +415,10 @@ blockInterfaces() const
             interfaces.set
             (
                 patchi,
-                &refCast<const BlockLduInterfaceField<Type> >(this->operator[](patchi))
+                &refCast<const BlockLduInterfaceField<Type> >
+                (
+                    this->operator[](patchi)
+                )
             );
         }
     }

src/OpenFOAM/graph/graph.H

@@ -210,7 +210,6 @@ public:
                     ()
                 );
 
-
                 // Selectors
 
                     //- Return a reference to the selected writer

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/Gauss/Gauss.C

@@ -62,12 +62,12 @@ Foam::Gauss::~Gauss()
 
 Foam::tmp<Foam::scalarField> Foam::Gauss::weights
 (
-    const vectorField& points,
+    const vectorField& controlPoints,
-    const vector& controlPoint
+    const vector& dataPoint
 ) const
 {
     // Algorithmic improvement, Matteo Lombardi.  21/Mar/2011
-    scalarField sqrDist = magSqr(points - controlPoint);
+    scalarField sqrDist = magSqr(controlPoints - dataPoint);
 
     return Foam::exp(-sqr(radius_)*sqrDist);
 }

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/Gauss/Gauss.H

@@ -99,8 +99,8 @@ public:
         //- Return weights given points
         virtual tmp<scalarField> weights
         (
-            const vectorField& points,
+            const vectorField& controlPoints,
-            const vector& controlPoint
+            const vector& dataPoint
         ) const;
 };
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/IMQB/IMQB.C

@@ -63,12 +63,12 @@ Foam::IMQB::~IMQB()
 
 Foam::tmp<Foam::scalarField> Foam::IMQB::weights
 (
-    const vectorField& points,
+    const vectorField& controlPoints,
-    const vector& controlPoint
+    const vector& dataPoint
 ) const
 {
     // Algorithmic improvement, Matteo Lombardi.  21/Mar/2011
-    scalarField sqrDist = magSqr(points - controlPoint);
+    scalarField sqrDist = magSqr(controlPoints - dataPoint);
 
     return 1/sqrt(sqrDist + sqr(radius_));
 }

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/IMQB/IMQB.H

@@ -99,8 +99,8 @@ public:
         //- Return weights given points
         virtual tmp<scalarField> weights
         (
-            const vectorField& points,
+            const vectorField& controlPoints,
-            const vector& controlPoint
+            const vector& dataPoint
         ) const;
 };
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/RBFFunction/RBFFunction.H

@@ -117,8 +117,8 @@ public:
         //- Return RBF weights
         virtual tmp<scalarField> weights
         (
-            const vectorField& points,
+            const vectorField& controlPoints,
-            const vector& controlPoint
+            const vector& dataPoint
         ) const = 0;
 };
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/TPS/TPS.C

@@ -62,11 +62,11 @@ Foam::TPS::~TPS()
 
 Foam::tmp<Foam::scalarField> Foam::TPS::weights
 (
-    const vectorField& points,
+    const vectorField& controlPoints,
-    const vector& controlPoint
+    const vector& dataPoint
 ) const
 {
-    scalarField dist = mag(points - controlPoint);
+    scalarField dist = mag(controlPoints - dataPoint);
     scalarField RBF(dist.size());
 
     forAll(RBF, i)

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/TPS/TPS.H

@@ -98,8 +98,8 @@ public:
         //- Return weights given points
         virtual tmp<scalarField> weights
         (
-            const vectorField& points,
+            const vectorField& controlPoints,
-            const vector& controlPoint
+            const vector& dataPoint
         ) const;
 };
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/W2/W2.C

@@ -62,11 +62,11 @@ Foam::W2::~W2()
 
 Foam::tmp<Foam::scalarField> Foam::W2::weights
 (
-    const vectorField& points,
+    const vectorField& controlPoints,
-    const vector& controlPoint
+    const vector& dataPoint
 ) const
 {
-    scalarField dist = mag(points - controlPoint);
+    scalarField dist = mag(controlPoints - dataPoint);
 
     scalarField RBF(dist.size());
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFFunctions/W2/W2.H

@@ -99,8 +99,8 @@ public:
         //- Return weights given points
         virtual tmp<scalarField> weights
         (
-            const vectorField& points,
+            const vectorField& controlPoints,
-            const vector& controlPoint
+            const vector& dataPoint
         ) const;
 };
 

src/OpenFOAM/interpolations/RBFInterpolation/RBFInterpolation.C

@@ -173,7 +173,6 @@ Foam::RBFInterpolation::RBFInterpolation
     const vectorField& allPoints
 )
 :
-    dict_(dict),
     controlPoints_(controlPoints),
     allPoints_(allPoints),
     RBF_(RBFFunction::New(word(dict.lookup("RBF")), dict)),
@@ -190,7 +189,6 @@ Foam::RBFInterpolation::RBFInterpolation
     const RBFInterpolation& rbf
 )
 :
-    dict_(rbf.dict_),
     controlPoints_(rbf.controlPoints_),
     allPoints_(rbf.allPoints_),
     RBF_(rbf.RBF_->clone()),

src/OpenFOAM/interpolations/RBFInterpolation/RBFInterpolation.H

@@ -86,13 +86,10 @@ class RBFInterpolation
 {
     // Private data
 
-        //- Dictionary
-        const dictionary& dict_;
-
         //- Reference to control points
         const vectorField& controlPoints_;
 
-        //- Rerefence to all points
+        //- Reference to all points
         const vectorField& allPoints_;
 
         //- RBF function

src/OpenFOAM/matrices/blockLduMatrix/BlockLduSolvers/BlockBiCGStab/BlockBiCGStabSolver.C

@@ -146,7 +146,8 @@ Foam::BlockBiCGStabSolver<Type>::solve
                 s[i] = r[i] - alpha*v[i];
             }
 
-            preconPtr_->preconditionT(sh, s);
+            // Bug fix, Alexander Monakov, 11/Jul/2012
+            preconPtr_->precondition(sh, s);
             matrix.Amul(t, sh);
             omega = gSumProd(t, s)/gSumProd(t, t);
 

src/OpenFOAM/matrices/lduMatrix/lduMatrix/lduMatrix.H

@@ -280,6 +280,9 @@ public:
             //- Is the stop criterion reached
             bool stop(lduMatrix::solverPerformance& solverPerf) const;
 
+            //- Is the converrgence criterion reached
+            bool converged(lduMatrix::solverPerformance& solverPerf) const;
+
             //- Read the control parameters from the dictionary
             virtual void readControls();
 

src/OpenFOAM/matrices/lduMatrix/lduMatrix/lduMatrixSolver.C

@@ -104,7 +104,7 @@ Foam::autoPtr<Foam::lduMatrix::solver> Foam::lduMatrix::solver::New
             FatalIOErrorIn
             (
                 "lduSolver::New", dict
-            )   << "Unknown asymmetric matrix solver " << solverName << nl << nl
+            )   << "Unknown asymmetric matrix solver " << solverName << nl
                 << "Valid asymmetric matrix solvers are :" << endl
                 << asymMatrixConstructorTablePtr_->toc()
                 << exit(FatalIOError);
@@ -197,6 +197,15 @@ bool Foam::lduMatrix::solver::stop
         return false;
     }
 
+    return converged(solverPerf);
+}
+
+
+bool Foam::lduMatrix::solver::converged
+(
+    lduMatrix::solverPerformance& solverPerf
+) const
+{
     if
     (
         solverPerf.nIterations() >= maxIter_

src/OpenFOAM/matrices/lduMatrix/solvers/GAMG/interfaces/mixingPlaneGAMGInterface/mixingPlaneGAMGInterface.H

@@ -107,6 +107,15 @@ public:
 
     // Member Functions
 
+        // Access
+
+            //- Return true if interface is coupled
+            virtual bool coupled() const
+            {
+                return true;
+            }
+
+
         // Agglomeration
 
             //- Agglomerating the given fine-level coefficients and return

src/OpenFOAM/meshes/polyMesh/polyPatches/constraint/cyclicGgi/cyclicGgiPolyPatch.C

@@ -39,6 +39,7 @@ Contributor
 #include "polyMesh.H"
 #include "Time.H"
 #include "standAlonePatch.H"
+#include "indirectPrimitivePatch.H"
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
@@ -125,7 +126,6 @@ void Foam::cyclicGgiPolyPatch::checkDefinition() const
                 transformedPoints
             );
     }
-
 }
 
 
@@ -302,6 +302,75 @@ void Foam::cyclicGgiPolyPatch::calcTransforms()
     {
         separation_.setSize(0);
     }
+
+    if (debug > 1 && master())
+    {
+        if (patchToPatch().uncoveredMasterFaces().size() > 0)
+        {
+            // Write uncovered master faces
+            Info<< "Writing uncovered master faces for patch "
+                << name() << " as VTK." << endl;
+
+            const polyMesh& mesh = boundaryMesh().mesh();
+
+            fileName fvPath(mesh.time().path()/"VTK");
+            mkDir(fvPath);
+
+            indirectPrimitivePatch::writeVTK
+            (
+                fvPath/fileName("uncoveredCyclicGgiFaces" + name()),
+                IndirectList<face>
+                (
+                    localFaces(),
+                    patchToPatch().uncoveredMasterFaces()
+                ),
+                localPoints()
+            );
+        }
+
+        if (patchToPatch().uncoveredSlaveFaces().size() > 0)
+        {
+            // Write uncovered master faces
+            Info<< "Writing uncovered shadow faces for patch "
+                << shadowName() << " as VTK." << endl;
+
+            const polyMesh& mesh = boundaryMesh().mesh();
+
+            fileName fvPath(mesh.time().path()/"VTK");
+            mkDir(fvPath);
+
+            indirectPrimitivePatch::writeVTK
+            (
+                fvPath/fileName("uncoveredCyclicGgiFaces" + shadowName()),
+                IndirectList<face>
+                (
+                    shadow().localFaces(),
+                    patchToPatch().uncoveredSlaveFaces()
+                ),
+                shadow().localPoints()
+            );
+        }
+
+        // Check for bridge overlap
+        if (!bridgeOverlap())
+        {
+            if
+            (
+                patchToPatch().uncoveredMasterFaces().size() > 0
+             || patchToPatch().uncoveredSlaveFaces().size() > 0
+            )
+            {
+                FatalErrorIn("label cyclicGgiPolyPatch::shadowIndex() const")
+                    << "cyclic ggi patch " << name() << " with shadow "
+                    << shadowName() << " has "
+                    << patchToPatch().uncoveredMasterFaces().size()
+                    << " uncovered master faces and "
+                    << patchToPatch().uncoveredSlaveFaces().size()
+                    << " uncovered slave faces.  Bridging is switched off. "
+                    << abort(FatalError);
+            }
+        }
+    }
 }
 
 

src/OpenFOAM/meshes/polyMesh/polyPatches/constraint/ggi/ggiPolyPatch.C

@@ -854,10 +854,6 @@ void Foam::ggiPolyPatch::calcTransforms()
 
     if (debug > 1 && master())
     {
-        Info<< "Writing transformed slave patch as VTK." << nl
-            << "Master: " << name()
-            << " Slave: " << shadowName() << endl;
-
         if (patchToPatch().uncoveredMasterFaces().size() > 0)
         {
             // Write uncovered master faces

src/OpenFOAM/meshes/polyMesh/polyPatches/constraint/mixingPlane/mixingPlanePolyPatch.C

@@ -217,7 +217,7 @@ Foam::mixingPlanePolyPatch::mixingPlanePolyPatch
 )
 :
     coupledPolyPatch(name, size, start, index, bm),
-    shadowName_("_initialize_me_"),
+    shadowName_(fileName::null),
     csPtr_
     (
         new coordinateSystem
@@ -500,6 +500,18 @@ Foam::mixingPlanePolyPatch::reconFaceCellCentres() const
 }
 
 
+void Foam::mixingPlanePolyPatch::initAddressing()
+{
+    polyPatch::initAddressing();
+}
+
+
+void Foam::mixingPlanePolyPatch::calcAddressing()
+{
+    polyPatch::calcAddressing();
+}
+
+
 void Foam::mixingPlanePolyPatch::initGeometry()
 {
     polyPatch::initGeometry();

src/OpenFOAM/meshes/polyMesh/polyPatches/constraint/mixingPlane/mixingPlanePolyPatch.H

@@ -112,6 +112,15 @@ protected:
 
     // Protected Member functions
 
+        //- Is the mixing plane active? (zone and shadow present)
+//         bool active() const;
+
+        //- Initialise the calculation of the patch addressing
+        virtual void initAddressing();
+
+        //- Calculate the patch addressing
+        virtual void calcAddressing();
+
         //- Initialise the calculation of the patch geometry
         virtual void initGeometry();
 

src/OpenFOAM/primitives/Tensor/tensor/tensor.C

@@ -201,12 +201,6 @@ vector eigenValues(const tensor& t)
 
 vector eigenVector(const tensor& t, const scalar lambda)
 {
-    // Not sure if this is OK.  HJ, 9/Jul/2010
-//    if (mag(lambda) < SMALL)
-//    {
-//        return vector::zero;
-//    }
-
     // Construct the matrix for the eigenvector problem
     tensor A(t - lambda*I);
 

src/OpenFOAM/primitives/direction/direction.H

@@ -27,21 +27,24 @@ Primitive
 
 Description
     Direction is an integer type used to represent the Cartesian directions
-    etc.  Currently it is a typedef to char which is limited to the range
+    etc.  Due to the extension of block matrix with lots of components
-    (0, 255) which should be adequate.
+    this is upgraded to unsigned int.  Request by David Gaden, 25/Nov/2012
+    HJ, 31/May/2012
 
 \*---------------------------------------------------------------------------*/
 
 #ifndef direction_H
 #define direction_H
 
-#include "char.H"
+#include "int.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 namespace Foam
 {
-    typedef unsigned char direction;
+//     typedef unsigned char direction;
+    // HJ, 31/May/2012
+    typedef unsigned int direction;
 }
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

src/OpenFOAM/primitives/random/Random.H

@@ -89,8 +89,8 @@ public:
         void randomise(symmTensor&);
         void randomise(tensor&);
 
-        //- Return a normal Gaussian randon number
+        //- Return a normal Gaussian random number
-        //  with zero mean and unity variance N(0, 1)
+        //  with zero mean and unit variance N(0, 1)
         scalar GaussNormal();
 };
 

src/coupledMatrix/coupledLduSolver/bicgStabSolver/coupledBicgStabSolver.C

@@ -208,8 +208,9 @@ Foam::coupledSolverPerformance Foam::coupledBicgStabSolver::solve
                 }
             }
 
-            // Execute preconditioning transpose
+            // Execute preconditioning
-            preconPtr_->preconditionT(sh, s, cmpt);
+            // Bug fix, Alexander Monakov, 11/Jul/2012
+            preconPtr_->precondition(sh, s, cmpt);
             matrix_.Amul(t, sh, bouCoeffs_, interfaces_, cmpt);
             omega = gSumProd(t, s)/gSumProd(t, t);
 

src/finiteArea/faMesh/faMesh.C

@@ -582,17 +582,12 @@ Foam::faMesh::faMesh
         // Check for processor edges
         labelList allUndefEdges = tmpList;
         labelList ngbPolyPatch(allUndefEdges.size(), -1);
-<<<<<<< HEAD
         forAll (ngbPolyPatch, edgeI)
-=======
-        forAll(ngbPolyPatch, edgeI)
->>>>>>> parallelTopo
         {
             label curEdge = allUndefEdges[edgeI];
 
             label curPMeshEdge = meshEdges[curEdge];
 
-<<<<<<< HEAD
             forAll (edgeFaces[curPMeshEdge], faceI)
             {
                 label curFace = edgeFaces[curPMeshEdge][faceI];
@@ -602,22 +597,10 @@ Foam::faMesh::faMesh
                     label polyPatchID =
                         pMesh.boundaryMesh().whichPatch(curFace);
 
-=======
-            forAll(edgeFaces[curPMeshEdge], faceI)
-            {
-                label curFace = edgeFaces[curPMeshEdge][faceI];
-                    
-                if (findIndex(faceLabels_, curFace) == -1)
-                {
-                    label polyPatchID = 
-                        m.boundaryMesh().whichPatch(curFace);
-                    
->>>>>>> parallelTopo
                     if (polyPatchID != -1)
                     {
                         ngbPolyPatch[edgeI] = polyPatchID;
                     }
-<<<<<<< HEAD
                 }
             }
         }
@@ -637,25 +620,6 @@ Foam::faMesh::faMesh
                 )
                 {
                     if (!processorPatchSet.found(ngbPolyPatch[edgeI]))
-=======
-                }    
-            }
-        }
-
-        //Count ngb processorPolyPatch-es
-        labelHashSet processorPatchSet;
-        forAll(ngbPolyPatch, edgeI)
-        {
-            if (ngbPolyPatch[edgeI] != -1)
-            {
-                if 
-                (
-                    m.boundaryMesh()[ngbPolyPatch[edgeI]].type()
-                 == processorPolyPatch::typeName
-                )
-                {
-                    if(!processorPatchSet.found(ngbPolyPatch[edgeI]))
->>>>>>> parallelTopo
                     {
                         processorPatchSet.insert(ngbPolyPatch[edgeI]);
                     }
@@ -665,11 +629,7 @@ Foam::faMesh::faMesh
         labelList processorPatches(processorPatchSet.toc());
         faPatches.setSize(faPatches.size() + processorPatches.size());
 
-<<<<<<< HEAD
         for (label i = 0; i < processorPatches.size(); i++)
-=======
-        for(label i=0; i<processorPatches.size(); i++)
->>>>>>> parallelTopo
         {
             SLList<label> tmpLst;
 
@@ -680,7 +640,6 @@ Foam::faMesh::faMesh
                     tmpLst.append(allUndefEdges[eI]);
                 }
             }
-<<<<<<< HEAD
 
             faPatches[faPatchNames.size() + i].edgeLabels_ = tmpLst;
 
@@ -690,31 +649,18 @@ Foam::faMesh::faMesh
             faPatches[faPatchNames.size() + i].type_ =
                 processorFaPatch::typeName;
 
-=======
-            
-            faPatches[faPatchNames.size() + i].edgeLabels_ = tmpLst;
-            faPatches[faPatchNames.size() + i].name_ = 
-                m.boundaryMesh()[processorPatches[i]].name();
-            faPatches[faPatchNames.size() + i].type_ = 
-                processorFaPatch::typeName;
->>>>>>> parallelTopo
             faPatches[faPatchNames.size() + i].ngbPolyPatchID_ =
                 processorPatches[i];
         }
 
         // Remaining undefined edges
         SLList<label> undefEdges;
-<<<<<<< HEAD
         forAll (ngbPolyPatch, eI)
-=======
-        forAll(ngbPolyPatch, eI)
->>>>>>> parallelTopo
         {
             if (ngbPolyPatch[eI] == -1)
             {
                 undefEdges.append(allUndefEdges[eI]);
             }
-<<<<<<< HEAD
             else if
             (
                !isA<processorPolyPatch>
@@ -724,15 +670,6 @@ Foam::faMesh::faMesh
             )
             {
                 undefEdges.append(allUndefEdges[eI]);
-=======
-            else if 
-            (
-                m.boundaryMesh()[ngbPolyPatch[eI]].type()
-             != processorPolyPatch::typeName
-            )
-            {
-                undefEdges.append(allUndefEdges[eI]);                
->>>>>>> parallelTopo
             }
         }
 
@@ -746,7 +683,6 @@ Foam::faMesh::faMesh
         }
         else
         {
-<<<<<<< HEAD
             faPatches.setSize(faPatches.size() - 1);
         }
     }
@@ -796,60 +732,8 @@ Foam::faMesh::faMesh
             }
 
             faPatches[patchI].edgeLabels_ = reorderedEdgeLabels;
-=======
-            faPatches.setSize(faPatches.size()-1);
->>>>>>> parallelTopo
         }
     }
-    else
-    {
-        faPatches.setSize(faPatches.size()-1);
-    }
-    
-
-    // Reorder processorFaPatch using 
-    // ordering of ngb processorPolyPatch
-    forAll(faPatches, patchI)
-    {
-        if (faPatches[patchI].type_ == processorFaPatch::typeName)
-        {
-            labelList ngbFaces(faPatches[patchI].edgeLabels_.size(), -1);
-
-            forAll(ngbFaces, edgeI)
-            {
-                label curEdge = faPatches[patchI].edgeLabels_[edgeI];
-
-                label curPMeshEdge = meshEdges[curEdge];
-
-                forAll(edgeFaces[curPMeshEdge], faceI)
-                {
-                    label curFace = edgeFaces[curPMeshEdge][faceI];
-                    
-                    label curPatchID = 
-                        m.boundaryMesh().whichPatch(curFace);
-                    
-                    if (curPatchID == faPatches[patchI].ngbPolyPatchID_)
-                    {
-                        ngbFaces[edgeI] = curFace;
-                    }            
-                }
-            }
-
-            SortableList<label> sortedNgbFaces(ngbFaces);
-            labelList reorderedEdgeLabels(ngbFaces.size(), -1);
-            for (label i=0; i<reorderedEdgeLabels.size(); i++)
-            {
-                reorderedEdgeLabels[i] =
-                    faPatches[patchI].edgeLabels_
-                    [
-                        sortedNgbFaces.indices()[i]
-                    ];
-            }
-
-            faPatches[patchI].edgeLabels_ = reorderedEdgeLabels;
-        }
-    }
-
 
 
     // Add good patches to faMesh
@@ -870,7 +754,6 @@ Foam::faMesh::faMesh
             if (faPatches[pI].ngbPolyPatchID_ == -1)
             {
                 FatalErrorIn
-<<<<<<< HEAD
                 (
                     "void faMesh::faMesh(const polyMesh&, const fileName&)"
                 )
@@ -883,30 +766,12 @@ Foam::faMesh::faMesh
                 refCast<const processorPolyPatch>
                 (
                     pMesh.boundaryMesh()[faPatches[pI].ngbPolyPatchID_]
-=======
-                (
-                    "void faMesh::faMesh(const polyMesh&, const fileName&)"
-                )
-                    << "ngbPolyPatch is not defined for processorFaPatch: "
-                        << faPatches[pI].name_
-                        << abort(FatalError);
-            }
-
-            const processorPolyPatch& procPolyPatch =
-                refCast<const processorPolyPatch>
-                (
-                    m.boundaryMesh()[faPatches[pI].ngbPolyPatchID_]
->>>>>>> parallelTopo
                 );
 
             faPatches[pI].dict_.add("myProcNo", procPolyPatch.myProcNo());
             faPatches[pI].dict_.add
             (
-<<<<<<< HEAD
                 "neighbProcNo",
-=======
-                "neighbProcNo", 
->>>>>>> parallelTopo
                 procPolyPatch.neighbProcNo()
             );
         }

src/finiteVolume/Make/files

@@ -112,7 +112,7 @@ $(constraintFvPatchFields)/ggi/ggiFvPatchFields.C
 $(constraintFvPatchFields)/cyclicGgi/cyclicGgiFvPatchFields.C
 $(constraintFvPatchFields)/overlapGgi/overlapGgiFvPatchFields.C
 $(constraintFvPatchFields)/mixingPlane/mixingPlaneFvPatchFields.C
-$(constraintFvPatchFields)/regionCouple/regionCoupleFvPatchFields.C
+$(constraintFvPatchFields)/regionCoupling/regionCouplingFvPatchFields.C
 
 derivedFvPatchFields = $(fvPatchFields)/derived
 $(derivedFvPatchFields)/activeBaffleVelocity/activeBaffleVelocityFvPatchVectorField.C
@@ -187,13 +187,8 @@ $(constraintFvsPatchFields)/wedge/wedgeFvsPatchFields.C
 $(constraintFvsPatchFields)/ggi/ggiFvsPatchFields.C
 $(constraintFvsPatchFields)/cyclicGgi/cyclicGgiFvsPatchFields.C
 $(constraintFvsPatchFields)/overlapGgi/overlapGgiFvsPatchFields.C
-<<<<<<< HEAD
-$(constraintFvsPatchFields)/regionCoupling/regionCouplingFvsPatchFields.C
-=======
 $(constraintFvsPatchFields)/mixingPlane/mixingPlaneFvsPatchFields.C
-$(constraintFvsPatchFields)/regionCouple/regionCoupleFvsPatchFields.C
+$(constraintFvsPatchFields)/regionCoupling/regionCouplingFvsPatchFields.C
->>>>>>> remotes/origin/mixingPlane_RC1
-
 
 fields/volFields/volFields.C
 fields/surfaceFields/surfaceFields.C
@@ -216,8 +211,6 @@ $(interpolation)/interpolationCellPointWallModified/makeInterpolationCellPointWa
 volPointInterpolation = interpolation/volPointInterpolation
 $(volPointInterpolation)/pointPatchInterpolation/pointPatchInterpolation.C
 $(volPointInterpolation)/volPointInterpolation.C
-interpolation/pointVolInterpolation/pointVolInterpolation.C
-
 
 pointVolInterpolation = interpolation/pointVolInterpolation
 $(pointVolInterpolation)/pointVolInterpolation.C
@@ -351,6 +344,11 @@ $(convectionSchemes)/noConvectionScheme/noConvectionSchemes.C
 $(convectionSchemes)/explicitConvectionScheme/explicitConvectionSchemes.C
 $(convectionSchemes)/multivariateGaussConvectionScheme/multivariateGaussConvectionSchemes.C
 
+adjConvectionSchemes = finiteVolume/adjConvectionSchemes
+$(adjConvectionSchemes)/adjConvectionScheme/adjConvectionSchemes.C
+$(adjConvectionSchemes)/noAdjConvectionScheme/noAdjConvectionSchemes.C
+$(adjConvectionSchemes)/explicitAdjConvectionScheme/explicitAdjConvectionSchemes.C
+
 laplacianSchemes = finiteVolume/laplacianSchemes
 $(laplacianSchemes)/laplacianScheme/laplacianSchemes.C
 $(laplacianSchemes)/gaussLaplacianScheme/gaussLaplacianSchemes.C

src/finiteVolume/cfdTools/general/adjustPhi/adjustPhi.C

@@ -129,6 +129,10 @@ bool Foam::adjustPhi
           > closedDomainTol*Foam::max(1.0, mag(massIn))
         )
         {
+            phi.write();
+            U.write();
+            p.write();
+
             // Cannot adjust
             FatalErrorIn
             (

src/finiteVolume/cfdTools/general/bound/bound.C

@@ -91,7 +91,7 @@ void Foam::boundMinMax
             ),
             vsf0.value()
         );
-
+        Info<< "new min: " << gMin(vsf.internalField()) << endl;
         vsf.correctBoundaryConditions();
         vsf.boundaryField() = max(vsf.boundaryField(), vsf0.value());
     }
@@ -111,7 +111,7 @@ void Foam::boundMinMax
             ),
             vsf1.value()
         );
-
+        Info<< "new max: " << gMax(vsf.internalField()) << endl;
         vsf.correctBoundaryConditions();
         vsf.boundaryField() = min(vsf.boundaryField(), vsf1.value());
     }

src/finiteVolume/cfdTools/incompressible/CourantNo.H

@@ -41,11 +41,11 @@ if (mesh.nInternalFaces())
     surfaceScalarField SfUfbyDelta =
         mesh.surfaceInterpolation::deltaCoeffs()*magPhi;
 
-    CoNum = max(SfUfbyDelta/mesh.magSf())
+    const scalar deltaT = runTime.deltaT().value();
-        .value()*runTime.deltaT().value();
 
-    meanCoNum = (sum(SfUfbyDelta)/sum(mesh.magSf()))
+    CoNum = max(SfUfbyDelta/mesh.magSf()).value()*deltaT;
-        .value()*runTime.deltaT().value();
+
+    meanCoNum = (sum(SfUfbyDelta)/sum(mesh.magSf())).value()*deltaT;
 
     velMag = max(magPhi/mesh.magSf()).value();
 }

src/finiteVolume/fields/fvPatchFields/basic/fixedValue/fixedValueFvPatchField.C

@@ -52,7 +52,7 @@ fixedValueFvPatchField<Type>::fixedValueFvPatchField
     const dictionary& dict
 )
 :
-    fvPatchField<Type>(p, iF, dict, true)
+    fvPatchField<Type>(p, iF, dict)
 {}
 
 

src/finiteVolume/fields/fvPatchFields/derived/fluxCorrectedVelocity/fluxCorrectedVelocityFvPatchVectorField.C

@@ -30,8 +30,6 @@ License
 #include "volFields.H"
 #include "surfaceFields.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 Foam::fluxCorrectedVelocityFvPatchVectorField::

src/finiteVolume/fields/fvPatchFields/derived/totalPressure/totalPressureFvPatchScalarField.C

@@ -169,7 +169,7 @@ void Foam::totalPressureFvPatchScalarField::updateCoeffs(const vectorField& Up)
     }
     else if (rhoName_ == "none")
     {
-        const fvPatchField<scalar>& psip =
+        const fvPatchScalarField& psip =
             lookupPatchField<volScalarField, scalar>(psiName_);
 
         if (gamma_ > 1.0)
@@ -193,7 +193,7 @@ void Foam::totalPressureFvPatchScalarField::updateCoeffs(const vectorField& Up)
     }
     else if (psiName_ == "none")
     {
-        const fvPatchField<scalar>& rho =
+        const fvPatchScalarField& rho =
             lookupPatchField<volScalarField, scalar>(rhoName_);
 
         operator==(p0_ - 0.5*rho*(1.0 - pos(phip))*magSqr(Up));

src/finiteVolume/fields/fvPatchFields/fvPatchField/fvPatchField.H

@@ -301,9 +301,15 @@ public:
                 return internalField_;
             }
 
-            //- Return the type of the calculated for of fvPatchField
+            //- Return the type of the calculated for type of fvPatchField
             static const word& calculatedType();
 
+            //- Return patch type (optional on read)
+            const word& patchType() const
+            {
+                return patchType_;
+            }
+
             //- Return true if this patch field fixes a value.
             //  Needed to check if a level has to be specified while solving
             //  Poissons equations.

src/finiteVolume/fields/fvPatchFields/fvPatchField/newFvPatchField.C

@@ -24,6 +24,7 @@ License
 
 \*---------------------------------------------------------------------------*/
 
+
 // * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * * //
 
 template<class Type>
@@ -137,8 +138,9 @@ Foam::tmp<Foam::fvPatchField<Type> > Foam::fvPatchField<Type>::New
                 "const DimensionedField<Type, volMesh>&, "
                 "const dictionary&)",
                 dict
-            )   << "inconsistent patch and patchField types for \n"
+            )   << "inconsistent patch and patchField types for field "
-                   "    patch type " << p.type()
+                << iF.name() << "\n"
+                << "    patch type " << p.type()
                 << " and patchField type " << patchFieldType
                 << exit(FatalIOError);
         }

src/finiteVolume/fields/fvsPatchFields/fvsPatchField/newFvsPatchField.C

@@ -149,8 +149,9 @@ tmp<fvsPatchField<Type> > fvsPatchField<Type>::New
                 "const DimensionedField<Type, surfaceMesh>&, "
                 "const dictionary&)",
                 dict
-            )   << "inconsistent patch and patchField types for \n"
+            )   << "inconsistent patch and patchField types for field "
-                   "    patch type " << p.type()
+                << iF.name() << "\n"
+                << "    patch type " << p.type()
                 << " and patchField type " << patchFieldType
                 << exit(FatalIOError);
         }

src/finiteVolume/finiteVolume/adjConvectionSchemes/adjConvectionScheme/adjConvectionScheme.C

@@ -0,0 +1,140 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Description
+    Abstract base class for finite volume calculus adjConvection schemes.
+
+\*---------------------------------------------------------------------------*/
+
+#include "fv.H"
+#include "HashTable.H"
+#include "linear.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+template<class Type>
+adjConvectionScheme<Type>::adjConvectionScheme(const adjConvectionScheme& cs)
+:
+    refCount(),
+    mesh_(cs.mesh_)
+{}
+
+
+// * * * * * * * * * * * * * * * * * Selectors * * * * * * * * * * * * * * * //
+
+template<class Type>
+tmp<adjConvectionScheme<Type> > adjConvectionScheme<Type>::New
+(
+    const fvMesh& mesh,
+    const volVectorField& Up,
+    Istream& schemeData
+)
+{
+    if (fv::debug)
+    {
+        Info<< "adjConvectionScheme<Type>::New"
+               "(const fvMesh&, const volVectorField&, Istream&) : "
+               "constructing adjConvectionScheme<Type>"
+            << endl;
+    }
+
+    if (schemeData.eof())
+    {
+        FatalIOErrorIn
+        (
+            "adjConvectionScheme<Type>::New"
+            "(const fvMesh&, const volVectorField&, Istream&)",
+            schemeData
+        )   << "AdjConvection scheme not specified" << endl << endl
+            << "Valid adjConvection schemes are :" << endl
+            << IstreamConstructorTablePtr_->toc()
+            << exit(FatalIOError);
+    }
+
+    word schemeName(schemeData);
+
+    typename IstreamConstructorTable::iterator cstrIter =
+        IstreamConstructorTablePtr_->find(schemeName);
+
+    if (cstrIter == IstreamConstructorTablePtr_->end())
+    {
+        FatalIOErrorIn
+        (
+            "adjConvectionScheme<Type>::New"
+            "(const fvMesh&, const volVectorField&, Istream&)",
+            schemeData
+        )   << "unknown adjConvection scheme " << schemeName << endl << endl
+            << "Valid adjConvection schemes are :" << endl
+            << IstreamConstructorTablePtr_->toc()
+            << exit(FatalIOError);
+    }
+
+    return cstrIter()(mesh, Up, schemeData);
+}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+template<class Type>
+adjConvectionScheme<Type>::~adjConvectionScheme()
+{}
+
+
+// * * * * * * * * * * * * * * * Member Operators  * * * * * * * * * * * * * //
+
+template<class Type>
+void adjConvectionScheme<Type>::operator=(const adjConvectionScheme<Type>& cs)
+{
+    if (this == &cs)
+    {
+        FatalErrorIn
+        (
+            "adjConvectionScheme<Type>::operator="
+            "(const adjConvectionScheme<Type>&)"
+        )   << "attempted assignment to self"
+            << abort(FatalError);
+    }
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/adjConvectionScheme/adjConvectionScheme.H

@@ -0,0 +1,190 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    Foam::fv::adjConvectionScheme
+
+Description
+    Abstract base class for adjConvection schemes.
+
+SourceFiles
+    adjConvectionScheme.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef adjConvectionScheme_H
+#define adjConvectionScheme_H
+
+#include "tmp.H"
+#include "volFieldsFwd.H"
+#include "surfaceFieldsFwd.H"
+#include "typeInfo.H"
+#include "runTimeSelectionTables.H"
+#include "multivariateSurfaceInterpolationScheme.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+template<class Type>
+class fvMatrix;
+
+class fvMesh;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class adjConvectionScheme Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class Type>
+class adjConvectionScheme
+:
+    public refCount
+{
+    // Private data
+
+        const fvMesh& mesh_;
+
+
+public:
+
+    //- Runtime type information
+    virtual const word& type() const = 0;
+
+
+    // Declare run-time constructor selection tables
+
+        declareRunTimeSelectionTable
+        (
+            tmp,
+            adjConvectionScheme,
+            Istream,
+            (
+                const fvMesh& mesh,
+                const volVectorField& Up,
+                Istream& schemeData
+            ),
+            (mesh, Up, schemeData)
+        );
+
+
+    // Constructors
+
+        //- Copy construct
+        adjConvectionScheme(const adjConvectionScheme&);
+
+        //- Construct from mesh, flux and Istream
+        adjConvectionScheme
+        (
+            const fvMesh& mesh,
+            const volVectorField&
+        )
+        :
+            mesh_(mesh)
+        {}
+
+
+    // Selectors
+
+        //- Return a pointer to a new adjConvectionScheme created on freestore
+        static tmp<adjConvectionScheme<Type> > New
+        (
+            const fvMesh& mesh,
+            const volVectorField& Up,
+            Istream& schemeData
+        );
+
+
+    // Destructor
+
+        virtual ~adjConvectionScheme();
+
+
+    // Member Functions
+
+        //- Return mesh reference
+        const fvMesh& mesh() const
+        {
+            return mesh_;
+        }
+
+        virtual tmp<fvMatrix<Type> > fvmAdjDiv
+        (
+            const volVectorField&,
+            GeometricField<Type, fvPatchField, volMesh>&
+        ) const = 0;
+
+        virtual tmp<GeometricField<Type, fvPatchField, volMesh> > fvcAdjDiv
+        (
+            const volVectorField&,
+            const GeometricField<Type, fvPatchField, volMesh>&
+        ) const = 0;
+
+
+    // Member operators
+
+        void operator=(const adjConvectionScheme<Type>&);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Add the patch constructor functions to the hash tables
+
+#define makeFvAdjConvectionTypeScheme(SS, Type)                               \
+                                                                              \
+defineNamedTemplateTypeNameAndDebug(SS<Type>, 0);                             \
+                                                                              \
+adjConvectionScheme<Type>::addIstreamConstructorToTable<SS<Type> >            \
+    add##SS##Type##IstreamConstructorToTable_;
+
+#define makeFvAdjConvectionScheme(SS)                                         \
+                                                                              \
+makeFvAdjConvectionTypeScheme(SS, vector)
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "adjConvectionScheme.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/adjConvectionScheme/adjConvectionSchemes.C

@@ -0,0 +1,65 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Description
+    Abstract base class for finite volume calculus adjConvection schemes.
+
+\*---------------------------------------------------------------------------*/
+
+#include "adjConvectionScheme.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Define the constructor function hash tables
+
+#define makeBaseAdjConvectionScheme(Type)                                     \
+                                                                              \
+defineTemplateRunTimeSelectionTable                                           \
+(                                                                             \
+    adjConvectionScheme<Type>,                                                \
+    Istream                                                                   \
+);                                                                            \
+                                                                              \
+
+makeBaseAdjConvectionScheme(vector)
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/explicitAdjConvectionScheme/explicitAdjConvectionScheme.C

@@ -0,0 +1,102 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "explicitAdjConvectionScheme.H"
+#include "fvcSurfaceIntegrate.H"
+#include "fvMatrices.H"
+#include "fvcGrad.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+template<class Type>
+tmp<fvMatrix<Type> >
+explicitAdjConvectionScheme<Type>::fvmAdjDiv
+(
+    const volVectorField& Up,
+    GeometricField<Type, fvPatchField, volMesh>& vf
+) const
+{
+    tmp<fvMatrix<Type> > tfvm
+    (
+        new fvMatrix<Type>
+        (
+            vf,
+            dimVol*Up.dimensions()*vf.dimensions()/dimLength
+        )
+    );
+    fvMatrix<Type>& fvm = tfvm();
+
+    // Matrix consistency
+    fvm.diag() = 0;
+
+    fvm += this->fvcAdjDiv(Up, vf);
+
+    return tfvm;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+explicitAdjConvectionScheme<Type>::fvcAdjDiv
+(
+    const volVectorField& Up,
+    const GeometricField<Type, fvPatchField, volMesh>& vf
+) const
+{
+    // Return Up & grad(vf).T()
+    tmp<GeometricField<Type, fvPatchField, volMesh> > tAdjConvection
+    (
+        fvc::grad(vf) & Up
+    );
+
+    tAdjConvection().rename
+    (
+        "adjConvection(" + Up.name() + ',' + vf.name() + ')'
+    );
+
+    return tAdjConvection;
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/explicitAdjConvectionScheme/explicitAdjConvectionScheme.H

@@ -0,0 +1,137 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    Foam::fv::explicitAdjConvectionScheme
+
+Description
+    AdjConvection scheme used to make adjConvection explicit without
+    recompilation
+
+Author
+    Hrvoje Jasak, Wikki Ltd.  All rights reserved.
+
+SourceFiles
+    explicitAdjConvectionScheme.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef explicitAdjConvectionScheme_H
+#define explicitAdjConvectionScheme_H
+
+#include "adjConvectionScheme.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+/*---------------------------------------------------------------------------*\
+                   Class explicitAdjConvectionScheme Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class Type>
+class explicitAdjConvectionScheme
+:
+    public fv::adjConvectionScheme<Type>
+{
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        explicitAdjConvectionScheme(const explicitAdjConvectionScheme&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const explicitAdjConvectionScheme&);
+
+
+public:
+
+    //- Runtime type information
+    TypeName("explicit");
+
+
+    // Constructors
+
+        //- Construct from flux and interpolation scheme
+        explicitAdjConvectionScheme
+        (
+            const fvMesh& mesh,
+            const volVectorField& Up
+        )
+        :
+            adjConvectionScheme<Type>(mesh, Up)
+        {}
+
+        //- Construct from flux and Istream
+        explicitAdjConvectionScheme
+        (
+            const fvMesh& mesh,
+            const volVectorField& Up,
+            Istream& is
+        )
+        :
+            adjConvectionScheme<Type>(mesh, Up)
+        {}
+
+
+    // Member Functions
+
+        tmp<fvMatrix<Type> > fvmAdjDiv
+        (
+            const volVectorField&,
+            GeometricField<Type, fvPatchField, volMesh>&
+        ) const;
+
+        tmp<GeometricField<Type, fvPatchField, volMesh> > fvcAdjDiv
+        (
+            const volVectorField&,
+            const GeometricField<Type, fvPatchField, volMesh>&
+        ) const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "explicitAdjConvectionScheme.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/explicitAdjConvectionScheme/explicitAdjConvectionSchemes.C

@@ -0,0 +1,40 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "explicitAdjConvectionScheme.H"
+#include "fvMesh.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+namespace fv
+{
+    makeFvAdjConvectionScheme(explicitAdjConvectionScheme)
+}
+}
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/noAdjConvectionScheme/noAdjConvectionScheme.C

@@ -0,0 +1,98 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "noAdjConvectionScheme.H"
+#include "fvcSurfaceIntegrate.H"
+#include "fvMatrices.H"
+#include "fvcGrad.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+template<class Type>
+tmp<fvMatrix<Type> >
+noAdjConvectionScheme<Type>::fvmAdjDiv
+(
+    const volVectorField& Up,
+    GeometricField<Type, fvPatchField, volMesh>& vf
+) const
+{
+    tmp<fvMatrix<Type> > tfvm
+    (
+        new fvMatrix<Type>
+        (
+            vf,
+            dimVol*Up.dimensions()*vf.dimensions()/dimLength
+        )
+    );
+
+    // Touch diagonal for consistency
+    tfvm().diag() = 0;
+
+    return tfvm;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+noAdjConvectionScheme<Type>::fvcAdjDiv
+(
+    const volVectorField& Up,
+    const GeometricField<Type, fvPatchField, volMesh>& vf
+) const
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > tAdjConvection
+    (
+        fvc::grad(vf) & Up
+    );
+
+    tAdjConvection().rename
+    (
+        "adjConvection(" + Up.name() + ',' + vf.name() + ')'
+    );
+
+    return tAdjConvection;
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/noAdjConvectionScheme/noAdjConvectionScheme.H

@@ -0,0 +1,137 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    Foam::fv::noAdjConvectionScheme
+
+Description
+    Dummy adjConvection scheme, used to switch off adjConvection without
+    recompilation
+
+Author
+    Hrvoje Jasak, Wikki Ltd.  All rights reserved.
+
+SourceFiles
+    noAdjConvectionScheme.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef noAdjConvectionScheme_H
+#define noAdjConvectionScheme_H
+
+#include "adjConvectionScheme.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fv
+{
+
+/*---------------------------------------------------------------------------*\
+                       Class noAdjConvectionScheme Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class Type>
+class noAdjConvectionScheme
+:
+    public fv::adjConvectionScheme<Type>
+{
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        noAdjConvectionScheme(const noAdjConvectionScheme&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const noAdjConvectionScheme&);
+
+
+public:
+
+    //- Runtime type information
+    TypeName("off");
+
+
+    // Constructors
+
+        //- Construct from flux and interpolation scheme
+        noAdjConvectionScheme
+        (
+            const fvMesh& mesh,
+            const volVectorField& Up
+        )
+        :
+            adjConvectionScheme<Type>(mesh, Up)
+        {}
+
+        //- Construct from flux and Istream
+        noAdjConvectionScheme
+        (
+            const fvMesh& mesh,
+            const volVectorField& Up,
+            Istream& is
+        )
+        :
+            adjConvectionScheme<Type>(mesh, Up)
+        {}
+
+
+    // Member Functions
+
+        tmp<fvMatrix<Type> > fvmAdjDiv
+        (
+            const volVectorField&,
+            GeometricField<Type, fvPatchField, volMesh>&
+        ) const;
+
+        tmp<GeometricField<Type, fvPatchField, volMesh> > fvcAdjDiv
+        (
+            const volVectorField&,
+            const GeometricField<Type, fvPatchField, volMesh>&
+        ) const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fv
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "noAdjConvectionScheme.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/adjConvectionSchemes/noAdjConvectionScheme/noAdjConvectionSchemes.C

@@ -2,7 +2,7 @@
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) Original author
+    \\  /    A nd           | Copyright held by original author
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -20,43 +20,23 @@ License
 
     You should have received a copy of the GNU General Public License
     along with OpenFOAM; if not, write to the Free Software Foundation,
-    Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-Application
-    addSwirlAndRotation
 
 Description
-    Adds solid body swirl and rotation to internal cells and rotatingPatches
     
 \*---------------------------------------------------------------------------*/
 
-#include "fvCFD.H"
+#include "noAdjConvectionScheme.H"
+#include "fvMesh.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-int main(int argc, char *argv[])
+namespace Foam
 {
-
+namespace fv
-#   include "setRootCase.H"
+{
-
+    makeFvAdjConvectionScheme(noAdjConvectionScheme)
-#   include "createTime.H"
+}
-#   include "createMesh.H"
-#   include "createFields.H"
-
-#   include "readRotation.H"
-#   include "setRotation.H"
-
-    // Force the write
-    U.write();
-
-    Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
-        << "  ClockTime = " << runTime.elapsedClockTime() << " s"
-        << nl << endl;
-
-    Info<< "End\n" << endl;
-
-    return(0);
 }
 
-
 // ************************************************************************* //

src/finiteVolume/finiteVolume/fvc/fvc.H

@@ -55,6 +55,8 @@ Description
 #include "fvcSup.H"
 #include "fvcMeshPhi.H"
 
+#include "fvcAdjDiv.H"
+
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 #endif

src/finiteVolume/finiteVolume/fvc/fvcAdjDiv.C

@@ -0,0 +1,192 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "fvcAdjDiv.H"
+#include "fvMesh.H"
+#include "fvcSurfaceIntegrate.H"
+#include "adjConvectionScheme.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace fvc
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const volVectorField& Up,
+    const GeometricField<Type, fvPatchField, volMesh>& vf,
+    const word& name
+)
+{
+    return fv::adjConvectionScheme<Type>::New
+    (
+        vf.mesh(),
+        Up,
+        vf.mesh().schemesDict().divScheme(name)
+    )().fvcAdjDiv(Up, vf);
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const tmp<volVectorField>& tUp,
+    const GeometricField<Type, fvPatchField, volMesh>& vf,
+    const word& name
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(tUp(), vf, name)
+    );
+    tUp.clear();
+    return AdjDiv;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const volVectorField& Up,
+    const tmp<GeometricField<Type, fvPatchField, volMesh> >& tvf,
+    const word& name
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(Up, tvf(), name)
+    );
+    tvf.clear();
+    return AdjDiv;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const tmp<volVectorField>& tUp,
+    const tmp<GeometricField<Type, fvPatchField, volMesh> >& tvf,
+    const word& name
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(tUp(), tvf(), name)
+    );
+    tUp.clear();
+    tvf.clear();
+    return AdjDiv;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const volVectorField& Up,
+    const GeometricField<Type, fvPatchField, volMesh>& vf
+)
+{
+    return fvc::adjDiv
+    (
+        Up, vf, "adjDiv(" + Up.name() + ',' + vf.name() + ')'
+    );
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const tmp<volVectorField>& tUp,
+    const GeometricField<Type, fvPatchField, volMesh>& vf
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(tUp(), vf)
+    );
+    tUp.clear();
+    return AdjDiv;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const volVectorField& Up,
+    const tmp<GeometricField<Type, fvPatchField, volMesh> >& tvf
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(Up, tvf())
+    );
+    tvf.clear();
+    return AdjDiv;
+}
+
+
+template<class Type>
+tmp<GeometricField<Type, fvPatchField, volMesh> >
+adjDiv
+(
+    const tmp<volVectorField>& tUp,
+    const tmp<GeometricField<Type, fvPatchField, volMesh> >& tvf
+)
+{
+    tmp<GeometricField<Type, fvPatchField, volMesh> > AdjDiv
+    (
+        fvc::adjDiv(tUp(), tvf())
+    );
+    tUp.clear();
+    tvf.clear();
+    return AdjDiv;
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace fvc
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/fvc/fvcAdjDiv.H

@@ -0,0 +1,131 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+InNamespace
+    Foam::fvc
+
+Description
+    Calculate the adjoint divergence of the given field.
+
+SourceFiles
+    fvcAdjDiv.C
+
+\*---------------------------------------------------------------------------*/
+
+
+#ifndef fvcAdjDiv_H
+#define fvcAdjDiv_H
+
+#include "volFieldsFwd.H"
+#include "surfaceFieldsFwd.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                     Namespace fvc functions Declaration
+\*---------------------------------------------------------------------------*/
+
+namespace fvc
+{
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const volVectorField&,
+        const GeometricField<Type, fvPatchField, volMesh>&,
+        const word& name
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const tmp<volVectorField>&,
+        const GeometricField<Type, fvPatchField, volMesh>&,
+        const word& name
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const volVectorField&,
+        const tmp<GeometricField<Type, fvPatchField, volMesh> >&,
+        const word& name
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const tmp<volVectorField>&,
+        const tmp<GeometricField<Type, fvPatchField, volMesh> >&,
+        const word& name
+    );
+
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const volVectorField&,
+        const GeometricField<Type, fvPatchField, volMesh>&
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const tmp<volVectorField>&,
+        const GeometricField<Type, fvPatchField, volMesh>&
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const volVectorField&,
+        const tmp<GeometricField<Type, fvPatchField, volMesh> >&
+    );
+
+    template<class Type>
+    tmp<GeometricField<Type, fvPatchField, volMesh> > adjDiv
+    (
+        const tmp<volVectorField>&,
+        const tmp<GeometricField<Type, fvPatchField, volMesh> >&
+    );
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "fvcAdjDiv.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/finiteVolume/finiteVolume/fvm/fvm.H

@@ -44,6 +44,7 @@ Description
 #include "fvmDdt.H"
 #include "fvmD2dt2.H"
 #include "fvmDiv.H"
+#include "fvmAdjDiv.H"
 #include "fvmLaplacian.H"
 #include "fvmSup.H"
 

src/finiteVolume/finiteVolume/fvm/fvmAdjDiv.C

@@ -27,7 +27,7 @@ License
 #include "fvmAdjDiv.H"
 #include "fvMesh.H"
 #include "fvMatrix.H"
-#include "adjointConvectionScheme.H"
+#include "adjConvectionScheme.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -45,30 +45,30 @@ template<class Type>
 tmp<fvMatrix<Type> >
 adjDiv
 (
-    const surfaceScalarField& flux,
+    const volVectorField& Up,
     GeometricField<Type, fvPatchField, volMesh>& vf,
     const word& name
 )
 {
-    return fv::adjointConvectionScheme<Type>::New
+    return fv::adjConvectionScheme<Type>::New
     (
         vf.mesh(),
-        flux,
+        Up,
         vf.mesh().schemesDict().divScheme(name)
-    )().fvmAdjDiv(flux, vf);
+    )().fvmAdjDiv(Up, vf);
 }
 
 template<class Type>
 tmp<fvMatrix<Type> >
 adjDiv
 (
-    const tmp<surfaceScalarField>& tflux,
+    const tmp<volVectorField>& tUp,
     GeometricField<Type, fvPatchField, volMesh>& vf,
     const word& name
 )
 {
-    tmp<fvMatrix<Type> > AdjDiv(fvm::adjDiv(tflux(), vf, name));
+    tmp<fvMatrix<Type> > AdjDiv(fvm::adjDiv(tUp(), vf, name));
-    tflux.clear();
+    tUp.clear();
     return AdjDiv;
 }
 
@@ -77,23 +77,23 @@ template<class Type>
 tmp<fvMatrix<Type> >
 adjDiv
 (
-    const surfaceScalarField& flux,
+    const volVectorField& Up,
     GeometricField<Type, fvPatchField, volMesh>& vf
 )
 {
-    return fvm::adjDiv(flux, vf, "adjDiv("+flux.name()+','+vf.name()+')');
+    return fvm::adjDiv(Up, vf, "adjDiv("+Up.name()+','+vf.name()+')');
 }
 
 template<class Type>
 tmp<fvMatrix<Type> >
 adjDiv
 (
-    const tmp<surfaceScalarField>& tflux,
+    const tmp<volVectorField>& tUp,
     GeometricField<Type, fvPatchField, volMesh>& vf
 )
 {
-    tmp<fvMatrix<Type> > AdjDiv(fvm::adjDiv(tflux(), vf));
+    tmp<fvMatrix<Type> > AdjDiv(fvm::adjDiv(tUp(), vf));
-    tflux.clear();
+    tUp.clear();
     return AdjDiv;
 }
 

src/finiteVolume/finiteVolume/fvm/fvmAdjDiv.H

@@ -55,7 +55,7 @@ namespace fvm
     template<class Type>
     tmp<fvMatrix<Type> > adjDiv
     (
-        const surfaceScalarField&,
+        const volVectorField&,
         GeometricField<Type, fvPatchField, volMesh>&,
         const word& name
     );
@@ -63,7 +63,7 @@ namespace fvm
     template<class Type>
     tmp<fvMatrix<Type> > adjDiv
     (
-        const tmp<surfaceScalarField>&,
+        const tmp<volVectorField>&,
         GeometricField<Type, fvPatchField, volMesh>&,
         const word& name
     );
@@ -72,14 +72,14 @@ namespace fvm
     template<class Type>
     tmp<fvMatrix<Type> > adjDiv
     (
-        const surfaceScalarField&,
+        const volVectorField&,
         GeometricField<Type, fvPatchField, volMesh>&
     );
 
     template<class Type>
     tmp<fvMatrix<Type> > adjDiv
     (
-        const tmp<surfaceScalarField>&,
+        const tmp<volVectorField>&,
         GeometricField<Type, fvPatchField, volMesh>&
     );
 }

src/finiteVolume/interpolation/volPointInterpolation/volPointInterpolation.C

@@ -88,7 +88,7 @@ void volPointInterpolation::makeWeights() const
         forAll(pcp, pointCelli)
         {
             pw[pointCelli] =
-                1.0/mag(points[pointi] - cellCentres[pcp[pointCelli]]);
+                1/mag(points[pointi] - cellCentres[pcp[pointCelli]]);
 
             sumWeights[pointi] += pw[pointCelli];
         }

src/lduSolvers/lduSolver/bicgStabSolver/bicgStabSolver.C

@@ -172,8 +172,9 @@ Foam::lduSolverPerformance Foam::bicgStabSolver::solve
                 s[i] = r[i] - alpha*v[i];
             }
 
-            // Execute preconditioning transpose
+            // Execute preconditioning
-            preconPtr_->preconditionT(sh, s, cmpt);
+            // Bug fix, Alexander Monakov, 11/Jul/2012
+            preconPtr_->precondition(sh, s, cmpt);
             matrix_.Amul(t, sh, coupleBouCoeffs_, interfaces_, cmpt);
             omega = gSumProd(t, s)/gSumProd(t, t);
 

src/lduSolvers/lduSolver/gmresSolver/gmresSolver.C

@@ -151,7 +151,11 @@ Foam::lduSolverPerformance Foam::gmresSolver::solve
     solverPerf.initialResidual() = gSumMag(rA)/normFactor;
     solverPerf.finalResidual() = solverPerf.initialResidual();
 
-    if (!stop(solverPerf))
+    // Note: GMRES cannot be forced to do minIter sweeps
+    // if the residual is zero, due to algorithmic reasons
+    // HJ, 22/Aug/2012
+    if (!converged(solverPerf))
+//     if (!stop(solverPerf))
     {
         // Create the Hesenberg matrix
         scalarSquareMatrix H(nDirs_, 0);

src/postProcessing/functionObjects/forces/forces/forces.H

@@ -77,7 +77,8 @@ public:
     // pressure/viscous forces Tuples.
     typedef Tuple2<pressureViscous, pressureViscous> forcesMoments;
 
-    //- Sum operation class to accumulate the pressure, viscous forces and moments
+    //- Sum operation class to accumulate the pressure, viscous forces
+    //  and moments
     class sumOp
     {
     public:

src/sampling/cuttingPlane/cuttingPlaneTemplates.C

@@ -29,8 +29,6 @@ Description
 
 #include "cuttingPlane.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
 template<class Type>

src/tetDecompositionFiniteElement/tetPolyMeshCellDecomp/addParallelPointPatchCellDecomp.C

@@ -149,10 +149,15 @@ void Foam::tetPolyMeshCellDecomp::addParallelPointPatch()
         const label globalCellOffset = mesh_.globalData().nTotalPoints();
 
         // Add the cell centres to the lookup list
-        label oldSize = pointProcAddressing.size();
-        pointProcAddressing.setSize(oldSize + cellProcAddressing.size());
 
-        forAll (cellProcAddressing, cellI)
+        // Bug fix: only live points included.  HJ, 24/Aug/2012
+        const label oldPointSize = mesh_.nPoints();
+        const label oldCellSize = mesh_.nCells();
+        pointProcAddressing.setSize(oldPointSize + oldCellSize);
+
+        label oldSize = oldPointSize;
+
+        for (label cellI = 0; cellI < oldCellSize; cellI++)
         {
             pointProcAddressing[oldSize + cellI] =
                 cellProcAddressing[cellI] + globalCellOffset;

src/tetDecompositionFiniteElement/tetPolyMeshFaceDecomp/addParallelPointPatchFaceDecomp.C

@@ -152,14 +152,20 @@ void Foam::tetPolyMeshFaceDecomp::addParallelPointPatch()
             mesh_.globalData().nTotalFaces() + globalFaceOffset;
 
         // Add the cell centres to the lookup list
-        label oldSize = pointProcAddressing.size();
+
+        // Bug fix: only live points/faces/cells included.  HJ, 24/Aug/2012
+        const label oldPointSize = mesh_.nPoints();
+        const label oldFaceSize = mesh_.nFaces();
+        const label oldCellSize = mesh_.nCells();
 
         pointProcAddressing.setSize
         (
-            oldSize + faceProcAddressing.size() + cellProcAddressing.size()
+            oldPointSize + oldFaceSize + oldCellSize
         );
 
-        forAll (faceProcAddressing, faceI)
+        label oldSize = oldPointSize;
+
+        for (label faceI = 0; faceI < oldFaceSize; faceI++)
         {
             pointProcAddressing[oldSize] =
                 faceProcAddressing[faceI] + globalFaceOffset;