Updates to overset tutorials

tutorials/overset/Allclean

@@ -1,6 +0,0 @@
-#!/bin/sh
-
-( cd simpleTests ; ./Allclean )
-( cd flowTests ; ./Allclean )
-( cd movingMeshTests ; ./Allclean )
-( cd freeSurfaceTests ; ./Allclean )

tutorials/overset/Allrun

@@ -1,6 +0,0 @@
-#!/bin/sh
-
-( cd simpleTests ; ./Allrun )
-( cd flowTests ; ./Allrun )
-( cd movingMeshTests ; ./Allrun )
-( cd freeSurfaceTests ; ./Allrun )

tutorials/overset/flowTests/Allclean

@@ -1,7 +0,0 @@
-#!/bin/sh
-
-( cd channelSimpleOverlapicoOversetFoam ; ./Allclean )
-( cd cylinderInChannelicoOversetFoam ; ./Allclean )
-
-( cd staticCylinderSheddingTest ; ./Allclean )
-( cd navyCylinderSheddingTest ; ./Allclean )

tutorials/overset/flowTests/Allrun

@@ -1,7 +0,0 @@
-#!/bin/sh
-
-( cd channelSimpleOverlapicoOversetFoam ; ./Allrun )
-( cd cylinderInChannelicoOversetFoam ; ./Allrun )
-
-( cd staticCylinderSheddingTest ; ./Allrun )
-( cd navyCylinderSheddingTest ; ./Allrun )

tutorials/overset/flowTests/navyCylinderSheddingTest/Allclean

@@ -1,5 +0,0 @@
-#!/bin/sh
-
-( cd bodyFittedCylinderCircular ; ./Allclean )
-( cd oversetCylinderTwoLevels ; ./Allclean )
-( cd oversetCylinderThreeLevels ; ./Allclean )

tutorials/overset/flowTests/navyCylinderSheddingTest/Allrun

@@ -1,5 +0,0 @@
-#!/bin/sh
-
-( cd bodyFittedCylinderCircular ; ./Allrun )
-( cd oversetCylinderTwoLevels ; ./Allrun )
-( cd oversetCylinderThreeLevels ; ./Allrun )

tutorials/overset/flowTests/oversetCylinderTwoLevels/Allrun

@@ -10,7 +10,7 @@ runApplication blockMesh
 \cp -f boundary constant/polyMesh/boundary
 runApplication setSet -batch setBatch.batch
 \rm -f constant/polyMesh/sets/*_old constant/polyMesh/sets/*_old.gz
-runApplication setsToZones -batch
+runApplication setsToZones
 
 runApplication potentialOversetFoam -writep
 runApplication $application

tutorials/overset/flowTests/staticCylinderSheddingTest/Allclean

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-( cd bodyFittedCylinder ; ./Allclean )
-( cd oversetCylinder ; ./Allclean )

tutorials/overset/flowTests/staticCylinderSheddingTest/Allrun

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-( cd bodyFittedCylinder ; ./Allrun )
-( cd oversetCylinder ; ./Allrun )

tutorials/overset/freeSurfaceTests/Allclean

@@ -1,3 +0,0 @@
-#!/bin/sh
-
-( cd cylBumpinterOversetFoam ; ./Allclean )

tutorials/overset/freeSurfaceTests/Allrun

@@ -1,3 +0,0 @@
-#!/bin/sh
-
-( cd cylBumpinterOversetFoam ; ./Allrun )

tutorials/overset/movingMeshTests/Allclean

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-( cd movingCylinderInChannelicoDyMOversetFoam ; ./Allclean )
-( cd movingCylinderInChannelpimpleDyMOversetFoam ; ./Allclean )

tutorials/overset/movingMeshTests/Allrun

@@ -1,4 +0,0 @@
-#!/bin/sh
-
-( cd movingCylinderInChannelicoDyMOversetFoam ; ./Allrun )
-( cd movingCylinderInChannelpimpleDyMOversetFoam ; ./Allrun )

tutorials/overset/parallelTests/channel60CellsOn6Processors/Allrun

@@ -20,8 +20,9 @@ runParallel $application 6
 # Run serial
 runApplication icoOversetFoam
 
+# Commented out for test loop
 # Compare parallel and serial results: serial run will be in time directory 3
 # and the parallel run will be in time directory 2
-\mv 2 3
+#\mv 2 3
-runApplication reconstructPar -latestTime
+#runApplication reconstructPar -latestTime
-meld 2 3
+#meld 2 3

tutorials/overset/parallelTests/channel60CellsOn6Processors/constant/cellDecomposition

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     4.0                                |
+|  \\    /   O peration     | Version:     4.1                                |
 |   \\  /    A nd           | Web:         http://www.foam-extend.org         |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/

tutorials/overset/simpleTests/Allclean

@@ -1,18 +0,0 @@
-#!/bin/sh
-
-( cd channelLaplaceNoOverset ; ./Allclean )
-
-( cd channelSimpleOverlapLaplace ; ./Allclean )
-( cd channelSimpleOverlapLaplaceNonInterfering ; ./Allclean )
-( cd channelSimpleOverlapLaplaceCutAlong ; ./Allclean )
-( cd channelSimpleOverlapLaplaceCutAcross ; ./Allclean )
-( cd channelSimpleOverlapLaplaceCutFringe ; ./Allclean )
-
-( cd cylinderInSquareLaplaceAutoFringe ; ./Allclean )
-
-( cd channelSimpleOverlapPotentialScalarTransport ; ./Allclean )
-
-( cd cylinderInSquareLaplace ; ./Allclean )
-( cd cylinderInChannelPotentialScalarTransport ; ./Allclean )
-
-( cd channelBodyFittedLaplace ; ./Allclean )

tutorials/overset/simpleTests/Allrun

@@ -1,17 +0,0 @@
-#!/bin/sh
-
-( cd channelLaplaceNoOverset ; ./Allrun )
-( cd channelBodyFittedLaplace ; ./Allrun )
-
-( cd channelSimpleOverlapLaplace ; ./Allrun )
-( cd channelSimpleOverlapLaplaceNonInterfering ; ./Allrun )
-( cd channelSimpleOverlapLaplaceCutAlong ; ./Allrun )
-( cd channelSimpleOverlapLaplaceCutAcross ; ./Allrun )
-( cd channelSimpleOverlapLaplaceCutFringe ; ./Allrun )
-
-( cd cylinderInSquareLaplaceAutoFringe ; ./Allrun )
-
-( cd channelSimpleOverlapPotentialScalarTransport ; ./Allrun )
-
-( cd cylinderInSquareLaplace ; ./Allrun )
-( cd cylinderInChannelPotentialScalarTransport ; ./Allrun )

tutorials/overset/simpleTests/channelLaplaceNoOverset/.gitignore

@@ -1,56 +0,0 @@
-# git-ls-files --others --exclude-from=.git/info/exclude
-# Lines that start with '#' are comments.
-
-# editor and misc backup files - anywhere
-*~
-.*~
-*.bak
-*.bak[0-9][0-9]
-*.orig
-*.orig[0-9][0-9]
-\#*\#
-
-# file-browser settings - anywhere
-.directory
-
-# data files
-*.dat
-
-# CVS recovered versions - anywhere
-.#*
-
-# SVN directories - anywhere
-
-.svn/
-
-# OpenFOAM results
-
-[0-9]*/
-!/0/
-processor*
-*/polyMesh/*
-!*/polyMesh/blockMeshDict
-cellToRegion*
-log*
-VTK
-
-# packages - anywhere
-
-*.tar.bz2
-*.tar.gz
-*.tar
-*.tgz
-*.gtgz
-
-# Pictures and movies
-
-*.png
-*.jpg
-*.jpeg
-*.bmp
-*.png
-*.avi
-*.mp4
-*.mpg
-
-#end-of-file

tutorials/overset/simpleTests/channelLaplaceNoOverset/0/T

@@ -1,51 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:  1.4                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
-    version         2.0;
-    format          ascii;
-    class           volScalarField;
-    object          T;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-dimensions [0 0 0 0 1 0 0];
-
-internalField uniform 2;
-
-boundaryField
-{
-    left
-    {
-        type fixedValue;
-        value uniform 1;
-    }
-    right
-    {
-        type fixedValue;
-        value uniform 2;
-    }
-    top
-    {
-        type zeroGradient;
-    }
-    bottom
-    {
-        type zeroGradient;
-    }
-    frontAndBack
-    {
-        type empty;
-    }
-}
-
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/0/T.org

@@ -1,51 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:  1.4                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
-    version         2.0;
-    format          ascii;
-    class           volScalarField;
-    object          T;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-
-dimensions [0 0 0 0 1 0 0];
-
-internalField uniform 2;
-
-boundaryField
-{
-    left
-    {
-        type fixedValue;
-        value uniform 1;
-    }
-    right
-    {
-        type fixedValue;
-        value uniform 2;
-    }
-    top
-    {
-        type zeroGradient;
-    }
-    bottom
-    {
-        type zeroGradient;
-    }
-    frontAndBack
-    {
-        type empty;
-    }
-}
-
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/Allclean

@@ -1,10 +0,0 @@
-#!/bin/sh
-
-# Source tutorial clean functions
-. $WM_PROJECT_DIR/bin/tools/CleanFunctions
-
-cleanCase
-\rm -rf 0/cellDist 0/cellDist.gz constant/cellDecomposition 
-\rm -rf *.vtk
-\rm -rf constant/polyMesh/
-mkdir constant/polyMesh

tutorials/overset/simpleTests/channelLaplaceNoOverset/Allrun

@@ -1,12 +0,0 @@
-#!/bin/sh
-# Source tutorial run functions
-. $WM_PROJECT_DIR/bin/tools/RunFunctions
-
-# Get application name
-application="laplacianOversetFoam"
-
-\cp -f blockMeshDict constant/polyMesh/blockMeshDict
-runApplication blockMesh
-
-runApplication decomposePar -cellDist
-runParallel $application 2

tutorials/overset/simpleTests/channelLaplaceNoOverset/blockMeshDict

@@ -1,70 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    object      blockMeshDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-convertToMeters 0.1;
-
-vertices
-(
-    (0 0 0)
-    (10 0 0)
-    (10 5 0)
-    (0 5 0)
-
-    (0  0 1)
-    (10 0 1)
-    (10 5 1)
-    (0 5 1)
-);
-
-blocks
-(
-    hex (0 1 2 3 4 5 6 7) left (10 5 1) simpleGrading (1 1 1)
-);
-
-edges
-(
-);
-
-patches
-(
-    patch left
-    (
-        (0 4 7 3)
-    )
-    patch right
-    (
-        (2 6 5 1)
-    )
-    wall top
-    (
-        (3 7 6 2)
-    )
-    wall bottom
-    (
-        (1 5 4 0)
-    )
-    empty frontAndBack
-    (
-        (0 3 2 1)
-        (4 5 6 7)
-    )
-);
-
-mergePatchPairs
-(
-);
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/boundary

@@ -1,70 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       polyBoundaryMesh;
-    location    "constant/polyMesh";
-    object      boundary;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-8
-(
-    oversetFaces
-    {
-        type            overset;
-        nFaces          0;
-        startFace       98;
-    }
-    left
-    {
-        type            patch;
-        nFaces          5;
-        startFace       98;
-    }
-    leftEnd
-    {
-        type            patch;
-        nFaces          5;
-        startFace       103;
-    }
-    rightStart
-    {
-        type            patch;
-        nFaces          5;
-        startFace       108;
-    }
-    right
-    {
-        type            patch;
-        nFaces          5;
-        startFace       113;
-    }
-    top
-    {
-        type            wall;
-        nFaces          12;
-        startFace       118;
-    }
-    bottom
-    {
-        type            wall;
-        nFaces          12;
-        startFace       130;
-    }
-    frontAndBack
-    {
-        type            empty;
-        nFaces          120;
-        startFace       142;
-    }
-)
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/constant/oversetMeshDict

@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:  1.4                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-
-FoamFile
-{
-    version         2.0;
-    format          ascii;
-    class           dictionary;
-    object          oversetMeshDict;
-}
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-interpolation
-{
-    type injection;
-}
-
-holePatches  ();
-
-regions
-(
-    // Left
-    left
-    {
-        // Donor regions
-        donorRegions ( right );
-
-        fringe
-        {
-            type faceCells;
-            patches ( leftEnd );
-        }
-    }
-
-    // Right
-    right
-    {
-        donorRegions ( left );
-
-        fringe
-        {
-            type faceCells;
-            patches ( rightStart );
-        }
-    }
-);
-
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/constant/transportProperties

@@ -1,19 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    object      transportProperties;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-DT              DT [0 2 -1 0 0 0 0] 1;
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/system/controlDict

@@ -1,59 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    object      controlDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-application     laplacianFoam;
-
-startFrom       startTime;
-// startFrom       latestTime;
-
-startTime       0;
-
-stopAt          endTime;
-
-endTime         1;
-
-deltaT          1;
-
-writeControl    timeStep;
-
-writeInterval   1;
-
-purgeWrite      0;
-
-writeFormat     ascii;
-
-writePrecision  6;
-
-writeCompression uncompressed;
-
-timeFormat      general;
-
-timePrecision   6;
-
-runTimeModifiable yes;
-
-libs
-(
-    "libfoam.so"
-    "libmeshTools.so"
-    "libsurfMesh.so"
-    "libsampling.so"
-    "libdynamicMesh.so"
-    "liboversetMesh.so"
-);
-
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/system/decomposeParDict

@@ -1,32 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  |                                                 |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    location    "system";
-    object      decomposeParDict;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-numberOfSubdomains 2;
-
-method          simple;
-
-simpleCoeffs
-{
-    n               (2 1 1);
-    delta           0.001;
-}
-
-distributed     no;
-
-roots           ( );
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/system/fvSchemes

@@ -1,55 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    object      fvSchemes;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-ddtSchemes
-{
-    default steadyState;
-}
-
-gradSchemes
-{
-    default         Gauss linear;
-}
-
-divSchemes
-{
-    default               none;
-}
-
-laplacianSchemes
-{
-    default                        none;
-    laplacian(DT,T)             Gauss linear corrected;
-}
-
-interpolationSchemes
-{
-    default         linear;
-}
-
-snGradSchemes
-{
-    default         corrected;
-}
-
-fluxRequired
-{
-    default         no;
-    pStar;
-    p;
-}
-
-// ************************************************************************* //

tutorials/overset/simpleTests/channelLaplaceNoOverset/system/fvSolution

@@ -1,65 +0,0 @@
-/*--------------------------------*- C++ -*----------------------------------*\
-| =========                 |                                                 |
-| \\      /  F ield         | foam-extend: Open Source CFD                    |
-|  \\    /   O peration     | Version:     3.2                                |
-|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
-|    \\/     M anipulation  | For copyright notice see file Copyright         |
-\*---------------------------------------------------------------------------*/
-FoamFile
-{
-    version     2.0;
-    format      ascii;
-    class       dictionary;
-    object      fvSolution;
-}
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-solvers
-{
-//     T
-//     {
-//         solver     smoothSolver;
-//         smoother   GaussSeidel;
-//         nSweeps 5;
-//         minIter 1;
-//         maxIter 1000;
-//         tolerance 1e-6;
-//         relTol    0;
-//     }
-
-    T
-    {
-        solver           BiCGStab;
-        preconditioner   DILU;
-        tolerance        1e-8;
-        relTol           0.0;
-        minIter          1;
-    }
-
-//     T
-//     {
-//         solver          amgSolver;
-//         cycle           W-cycle;
-//         policy          AAMG;
-//         nPreSweeps      0;
-//         nPostSweeps     2;
-//         groupSize       2;
-//         minCoarseEqns   20;
-//         nMaxLevels      100;
-//         scale           on;
-//         smoother        ILU;
-
-//         tolerance        1e-8;
-//         relTol           0.01;
-//         minIter          1;
-//     }
-}
-
-SIMPLE
-{
-    nNonOrthogonalCorrectors 0;
-}
-
-
-
-// ************************************************************************* //