From bea25f59603a51d9acb0bb62d5650fc4678c9787 Mon Sep 17 00:00:00 2001 From: Hrvoje Jasak Date: Tue, 21 Sep 2010 15:32:04 +0100 Subject: [PATCH] Compilation fixes --- .../solvers/compressible/sonicFoam/UEqn.H | 8 + .../readGravitationalAcceleration.H | 2 +- .../estimateScalarError/estimateScalarError.C | 21 +- .../icoErrorEstimate/icoErrorEstimate.C | 22 +- .../icoMomentError/icoMomentError.C | 22 +- .../momentScalarError/momentScalarError.C | 21 +- .../simpleFoamResidual/Make/options | 8 +- .../simpleFoamResidual/simpleFoamResidual.C | 24 +- .../fluentMeshToFoam/fluentMeshToFoam.L | 26 +- .../mesh/generation/blockMesh/blockMeshApp.C | 2 +- .../generation/blockMesh/createTopology.C | 2 +- .../manipulation/renumberMesh/renumberMesh.C | 9 +- .../decomposePar/Make/options | 5 +- .../decomposePar/domainDecomposition.C | 42 +- etc/apps/paraview3/bashrc | 46 +- etc/controlDict | 59 +- src/Allwmake | 6 +- src/ODE/ODESolvers/SIBS/SIMPR.C | 7 +- .../sixDOF/quaternions/HamiltonRodriguezRot.H | 4 +- src/ODE/sixDOF/sixDOFqODE/sixDOFqODE.C | 4 +- src/ODE/sixDOF/sixDOFqODE/sixDOFqODE.H | 2 +- src/ODE/translationODE/translationODE.C | 4 +- src/ODE/translationODE/translationODE.H | 2 +- src/OpenFOAM/Make/files | 6 + src/OpenFOAM/db/Time/Time.C | 6 +- src/OpenFOAM/db/Time/Time.H | 6 +- .../GeometricField/MapGeometricFields.H | 9 +- src/OpenFOAM/global/debug/debug.C | 6 + src/OpenFOAM/include/addConstantOption.H | 1 - src/OpenFOAM/include/addTimeOptions.H | 8 + .../matrices/Matrix/tools/DenseMatrixTools.C | 2 +- .../matrices/Matrix/tools/DenseMatrixTools.H | 6 +- .../matrices/lduMatrix/solvers/PBiCG/PBiCG.C | 39 +- .../matrices/lduMatrix/solvers/PCG/PCG.C | 41 +- .../scalarMatrices/scalarSquareMatrix.C | 203 + .../scalarMatrices/scalarSquareMatrix.H} | 102 +- .../scalarSquareMatrixTemplates.C | 179 + .../overlapGgi/overlapGgiPointPatch.H | 6 +- .../primitiveMesh/primitiveMeshPointEdges.C | 112 + src/OpenFOAM/primitives/Scalar/Scalar.H | 2 + .../primitives/VectorSpace/VectorSpaceI.H | 1 + .../autoHexMeshDriver/autoLayerDriver.C | 11 +- .../autoHexMeshDriver/autoLayerDriver.H | 4 +- .../autoHexMeshDriver/autoLayerDriverShrink.C | 8 +- .../autoHexMeshDriver/autoSnapDriver.H | 1 + .../decompositionMethod/decompositionMethod.H | 2 +- .../scotchDecomp/Make/options | 6 +- .../dynamicFvMesh/dynamicFvMesh.C | 18 +- .../dynamicFvMesh/dynamicFvMesh.H | 14 +- src/dynamicFvMesh/tetMetrics/tetMetric.H | 8 + src/dynamicFvMesh/tetMetrics/tetMetrics.H | 51 +- src/dynamicMesh/Make/files | 2 +- .../boundaryMesh/boundaryMesh.C | 10 +- .../boundaryMesh/octreeDataFaceList.C | 4 +- .../directActions/faceCollapser.H | 2 +- .../directTopoChange/directActions/hexRef8.H | 2 +- .../directActions/localPointRegion.H | 2 +- .../directActions/removeFaces.H | 2 +- .../directTopoChange/directTopoChange.C | 26 +- .../directTopoChange/directTopoChange.H | 2 +- .../fvMeshDistribute/CompactListList_dev.C | 257 + .../fvMeshDistribute/CompactListList_dev.H | 270 + .../fvMeshDistribute/CompactListList_devI.H | 276 + .../fvMeshDistribute/CompactListList_devIO.C} | 44 +- .../fvMeshDistribute/fvMeshDistribute.C | 741 +- .../fvMeshDistribute/fvMeshDistribute.H | 77 +- .../fvMeshDistributeTemplates.C | 189 +- .../meshAdder/polyMeshAdder/polyMeshAdder.C | 17 +- .../meshCut/cellLooper/geomCellLooper.C | 2 +- .../repatchPolyTopoChanger.C | 2 +- .../motionSmoother/motionSmoother.C | 69 +- .../motionSmoother/motionSmoother.H | 74 +- .../motionSmoother/motionSmootherCheck.C | 123 +- .../motionSmoother/motionSmootherTemplates.C | 5 +- .../polyMeshGeometry/polyMeshGeometry.H | 2 +- .../polyTopoChange/polyTopoChange.H | 2 +- .../polyTopoChangerChangeMesh.C | 9 +- .../engineTopoChangerMesh.C | 2 - .../engineTopoChangerMesh.H | 17 - .../engineValveSliding/engineValveSliding.C | 18 +- .../engineTopoChangerMesh/layerAR/layerAR.C | 17 +- .../pistonLayer/addPistonLayerMeshModifiers.C | 10 +- .../pistonLayer/pistonLayer.C | 10 +- src/finiteArea/faMesh/faMesh.C | 18 +- src/finiteArea/faMesh/faMesh.H | 2 +- .../faMesh/faMeshDemandDrivenData.C | 96 +- .../faPatchFields/faPatchField/faPatchField.C | 2 +- .../faePatchField/faePatchField.C | 2 +- src/finiteArea/finiteArea/fa/fa.C | 10 +- .../leastSquaresFaVectors.C | 31 +- .../blended/blendedEdgeInterpolation.H | 12 +- src/finiteVolume/finiteVolume/fv/fv.C | 1 + .../fvMatrices/fvMatrix/fvMatrixSolve.C | 2 +- .../fvScalarMatrix/fvScalarMatrix.C | 7 +- .../extendedUpwindCellToFaceStencil.C | 2 +- src/finiteVolume/fvMesh/fvMesh.C | 2 +- .../limitedSchemes/blended/blended.H | 2 +- src/fvMotionSolver/Make/files | 2 +- .../fvMotionSolver/fvMotionSolverTemplates.C | 14 +- ...llatingDisplacementPointPatchVectorField.C | 43 +- ...llatingDisplacementPointPatchVectorField.H | 29 +- ...OscillatingVelocityPointPatchVectorField.C | 40 +- ...OscillatingVelocityPointPatchVectorField.H | 43 +- ...llatingDisplacementPointPatchVectorField.C | 12 +- ...llatingDisplacementPointPatchVectorField.H | 27 +- ...oscillatingVelocityPointPatchVectorField.C | 42 +- ...oscillatingVelocityPointPatchVectorField.H | 40 +- ...surfaceDisplacementPointPatchVectorField.C | 4 +- ...surfaceDisplacementPointPatchVectorField.H | 11 +- ...aceSlipDisplacementPointPatchVectorField.C | 326 +- ...aceSlipDisplacementPointPatchVectorField.H | 61 +- src/lagrangian/Allwmake | 8 +- src/lagrangian/dieselSpray/Make/options | 8 +- src/lagrangian/dieselSpray/parcel/parcel.C | 8 +- .../PatchPostProcessing/PatchPostProcessing.C | 1 + .../bufferedAccumulator/bufferedAccumulator.C | 238 - .../bufferedAccumulator/bufferedAccumulator.H | 178 - .../bufferedAccumulatorI.H | 80 - .../correlationFunction/correlationFunction.C | 224 - .../correlationFunction/correlationFunction.H | 180 - .../correlationFunctionI.H | 70 - .../correlationFunctionIO.C | 72 - .../molecule/distribution/distribution.C | 449 - .../molecule/distribution/distribution.H | 134 - .../molecule/distribution/distributionI.H | 35 - .../molecule/distribution/distributionIO.C | 35 - ...eculeCloudApplyConstraintsAndThermostats.C | 60 - .../moleculeCloudBuildCellInteractionLists.C | 80 - .../moleculeCloudBuildCellOccupancy.C | 68 - .../moleculeCloudBuildCellReferralLists.C | 194 - .../moleculeCloudBuildDirectInteractionList.H | 188 - ...oleculeCloudBuildReferredInteractionList.H | 1285 - .../moleculeCloudCalculateExternalForce.C | 42 - .../moleculeCloudCalculateForce.C | 59 - .../moleculeCloudCalculatePairForce.C | 41 - ...moleculeCloudCalculatePairForceRealCells.H | 49 - ...lculatePairForceRealCellsCalculationStep.H | 33 - ...culeCloudCalculatePairForceReferredCells.H | 59 - .../moleculeCloudCalculateTetherForce.C | 69 - .../moleculeCloud/moleculeCloudCodeSnippets.H | 193 - .../moleculeCloudIntegrateEquationsOfMotion.C | 50 - .../moleculeCloudReadMDParameters.H | 177 - .../moleculeCloudRealCellsInRangeOfSegment.C | 152 - ...leculeCloudReferredCellsInRangeOfSegment.C | 117 - .../moleculeCloudRemoveHighEnergyOverlaps.C | 67 - ...leCloudRemoveHighEnergyOverlapsRealCells.H | 55 - ...ghEnergyOverlapsRealCellsCalculationStep.H | 79 - ...oudRemoveHighEnergyOverlapsReferredCells.H | 152 - .../moleculeCloudTestEdgeEdgeDistance.C | 86 - .../moleculeCloudTestPointFaceDistance.C | 235 - .../referralLists/receivingReferralList.C | 181 - .../referralLists/sendingReferralList.C | 178 - .../molecule/referredCell/referredCell.C | 441 - .../molecule/referredCell/referredCell.H | 277 - .../molecule/referredCell/referredCellI.H | 127 - .../referredCellList/referredCellList.C | 327 - .../referredCellList/referredCellList.H | 103 - .../referredCellList/referredCellListI.H | 35 - .../referredMolecule/referredMolecule.C | 89 - .../referredMolecule/referredMolecule.H | 130 - .../referredMolecule/referredMoleculeI.H | 75 - src/lagrangian/solidParticle/solidParticle.C | 1 + src/lduSolvers/Make/files | 1 + src/lduSolvers/amg/coarseAmgLevel.C | 7 +- src/lduSolvers/amg/coarseAmgLevel.H | 10 + src/lduSolvers/amg/fineAmgLevel.C | 9 +- src/lduSolvers/amg/fineAmgLevel.H | 10 + .../lduPrecon/CholeskyPrecon/CholeskyPrecon.C | 100 +- .../lduPrecon/CholeskyPrecon/CholeskyPrecon.H | 10 +- src/lduSolvers/lduPrecon/ILU0/ILU0.C | 220 + .../lduPrecon/ILU0/ILU0.H} | 120 +- .../lduPrecon/amgPrecon/amgPrecon.C | 67 +- .../lduPrecon/amgPrecon/amgPrecon.H | 18 - .../symGaussSeidelPrecon.C | 15 +- .../lduSmoother/iluSmoother/iluSmoother.C | 9 +- .../symGaussSeidelSmoother.C | 8 +- .../lduSolver/amgSolver/amgSolver.C | 6 +- .../lduSolver/amgSolver/amgSolver.H | 2 +- .../lduSolver/bicgSolver/bicgSolver.C | 6 +- .../lduSolver/bicgSolver/bicgSolver.H | 2 +- .../lduSolver/bicgStabSolver/bicgStabSolver.C | 6 +- .../lduSolver/bicgStabSolver/bicgStabSolver.H | 2 +- src/lduSolvers/lduSolver/cgSolver/cgSolver.C | 6 +- src/lduSolvers/lduSolver/cgSolver/cgSolver.H | 2 +- .../deflationSolver/deflationSolver.C | 26 +- .../deflationSolver/deflationSolver.H | 7 +- .../lduSolver/fpeAmgSolver/fpeAmgSolver.C | 10 +- .../lduSolver/fpeAmgSolver/fpeAmgSolver.H | 2 +- .../lduSolver/gmresSolver/gmresSolver.C | 12 +- .../lduSolver/gmresSolver/gmresSolver.H | 2 +- .../lduSolver/mpeAmgSolver/mpeAmgSolver.C | 12 +- .../lduSolver/mpeAmgSolver/mpeAmgSolver.H | 2 +- .../lduSolver/rreAmgSolver/rreAmgSolver.C | 12 +- .../lduSolver/rreAmgSolver/rreAmgSolver.H | 2 +- .../check/ggiCheck/ggiCheckFunctionObject.C | 5 +- .../check/ggiCheck/ggiCheckFunctionObject.H | 3 - .../check/meshCheck/meshCheckFunctionObject.C | 5 +- .../check/meshCheck/meshCheckFunctionObject.H | 3 - .../field/minMaxField/minMaxField.C | 10 +- .../field/minMaxField/minMaxField.H | 3 - .../functionObjects/forces/forces/forces.C | 2 +- ...gidBodyDisplacementPointPatchVectorField.C | 18 +- ...gidBodyDisplacementPointPatchVectorField.H | 15 +- ...gidBodyDisplacementPointPatchVectorField.C | 18 +- ...gidBodyDisplacementPointPatchVectorField.H | 15 +- .../cuttingPlane/cuttingPlaneTemplates.C} | 39 +- .../sampledSet/sampledSets/sampledSets.C | 2 +- .../{gnuplotSetWriter.C => jplotSetWriter.C} | 26 +- .../{gnuplotSetWriter.H => jplotSetWriter.H} | 72 +- .../isoSurface/sampledIsoSurface.C | 13 +- .../sampledCuttingPlane/sampledCuttingPlane.C | 15 +- .../MeshedSurfaceProxy/MeshedSurfaceProxy.C | 2 + .../tetFemCalculus/tetFec.C | 50 +- .../tetFemMatrix/tetFemMatrix.H | 6 +- .../tetFemMatrix/tetFemMatrixSolve.C | 11 +- .../tetFemMatrix/tetFemScalarMatrix.C | 6 +- .../tetFemMatrix/tetFemScalarMatrix.H | 2 +- .../tetFemMethod/tetFem.C | 25 +- .../tetPolyMeshMapperCellDecomp.H | 4 +- .../calcTetPolyMeshCellDecompGeometry.C | 6 +- .../tetPolyMeshCellDecomp.H | 10 +- .../tetPolyMeshMapperFaceDecomp.H | 4 +- .../calcTetPolyMeshFaceDecompGeometry.C | 8 +- .../tetPolyMeshFaceDecomp.H | 10 +- .../tetPolyMeshLduAddressingFaceDecomp.C | 2 +- .../motionDiffs/linear/linearDiff.C | 2 +- src/thermophysicalModels/basic/Make/files | 24 +- .../mixtures/basicMixture/basicMixtures.C} | 77 +- .../chemistryModel/Make/files | 13 - .../chemistryModel/binaryNode/binaryNode.C | 191 - .../chemistryModel/binaryNode/binaryNode.H | 175 - .../chemistryModel/binaryTree/binaryTree.C | 87 - .../chemistryModel/binaryTree/binaryTree.H | 183 - .../chemistryModel/binaryTree/binaryTreeAdd.C | 587 - .../binaryTree/binaryTreeClean.C | 632 - .../chemistryModel/binaryTree/binaryTreeI.H | 134 - .../binaryTree/binaryTreeInsert.C | 597 - .../binaryTree/binaryTreeScan.C | 106 - .../binaryTree/binaryTreeSearch.C | 190 - .../chemistryModel/binaryTree/calculatevTa.H | 15 - .../chemistryModel/chemPoint/chemPoint.C | 1 - .../chemistryModel/chemPoint/chemPoint.H | 108 +- .../ODEChemistryModel/ODEChemistryModel.C | 23 +- .../ODEChemistryModel/ODEChemistryModel.H | 32 +- .../ODEChemistryModel/ODEChemistryModelI.H | 8 + .../chemistryOnlineLibrary.C | 232 - .../chemistryOnlineLibrary.H | 200 - .../chemistryModel/chemistrySolver/ode/ode.C | 4 +- .../chemistryReader/chemistryReader.H | 2 + .../mixtures/egrMixture/egrMixture.C | 5 +- .../inhomogeneousMixture.C | 5 +- .../reactingMixture/reactingMixture.C | 4 +- .../reactingMixture/reactingMixture.H | 7 +- .../solids/solid/newSolid.C | 89 + .../specie/thermo/specieThermo/specieThermo.C | 2 +- .../specie/thermo/specieThermo/specieThermo.H | 8 +- src/topoChangerFvMesh/Make/options | 2 +- .../topoChangerFvMesh/topoChangerFvMesh.C | 18 +- .../topoChangerFvMesh/topoChangerFvMesh.H | 14 +- .../compressible/LES/LESModel/LESModel.H | 5 +- .../compressible/RAS/RASModel/RASModel.H | 7 +- .../checkkOmega_LowRePatchFieldTypes.H | 19 + .../RAS/kOmegaSST_LowRe/kOmegaSST_LowRe.C | 18 + .../RAS/kOmegaSST_LowRe/kOmegaSST_LowRe.H | 3 + .../RAS/kOmegaSST_LowRe/kOmega_LowReI.H | 2 +- .../incompressible/LES/LESModel/LESModel.H | 7 +- .../incompressible/RAS/RASModel/RASModel.H | 3 +- .../RAS/kOmegaSST_LowRe/kOmegaSST_LowRe.C | 21 +- .../RAS/kOmegaSST_LowRe/kOmegaSST_LowRe.H | 5 + .../turbulenceModel/turbulenceModel.H | 7 +- .../constant/polyMesh/sets/rotor | 3045 -- .../constant/polyMesh/sets/rotor_old | 6309 --- .../depthCharge3D/system/machines | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.05 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.1 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.15 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.2 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.25 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.3 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.35 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.4 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.45 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.5 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.55 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.6 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.65 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.7 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.75 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.8 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.85 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.9 | 1 - tutorials/conjugateHeatFoam/heatedBlock/0.95 | 1 - .../damBreakWithObstacle/VTK/c0/c0_1.vtk | Bin 230571 -> 0 bytes .../constant/polyMesh/sets/c0 | 32279 --------------- .../constant/polyMesh/sets/c0_old | 32791 ---------------- .../nozzleFlow2D/constant/polyMesh/sets/c0 | 7090 ---- .../constant/polyMesh/sets/c0_old | 21 - .../constant/polyMesh/sets/refinedCells | 14159 ------- .../LadenburgJet60psi/system/machines | 8 - 299 files changed, 4017 insertions(+), 108360 deletions(-) create mode 100644 applications/solvers/compressible/sonicFoam/UEqn.H delete mode 100644 src/OpenFOAM/include/addConstantOption.H create mode 100644 src/OpenFOAM/include/addTimeOptions.H create mode 100644 src/OpenFOAM/matrices/scalarMatrices/scalarSquareMatrix.C rename src/{lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.H => OpenFOAM/matrices/scalarMatrices/scalarSquareMatrix.H} (50%) create mode 100644 src/OpenFOAM/matrices/scalarMatrices/scalarSquareMatrixTemplates.C create mode 100644 src/OpenFOAM/meshes/primitiveMesh/primitiveMeshPointEdges.C create mode 100644 src/dynamicMesh/directTopoChange/fvMeshDistribute/CompactListList_dev.C create mode 100644 src/dynamicMesh/directTopoChange/fvMeshDistribute/CompactListList_dev.H create mode 100644 src/dynamicMesh/directTopoChange/fvMeshDistribute/CompactListList_devI.H rename src/{lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorIO.C => dynamicMesh/directTopoChange/fvMeshDistribute/CompactListList_devIO.C} (63%) delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulator.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/bufferedAccumulator/bufferedAccumulatorI.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/correlationFunction.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/correlationFunction.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/correlationFunctionI.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/correlationFunction/correlationFunctionIO.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/distribution/distribution.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/distribution/distribution.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/distribution/distributionI.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/distribution/distributionIO.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudApplyConstraintsAndThermostats.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudBuildCellInteractionLists.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudBuildCellOccupancy.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudBuildCellReferralLists.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudBuildDirectInteractionList.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudBuildReferredInteractionList.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculateExternalForce.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculateForce.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculatePairForce.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculatePairForceRealCells.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculatePairForceRealCellsCalculationStep.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculatePairForceReferredCells.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCalculateTetherForce.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudCodeSnippets.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudIntegrateEquationsOfMotion.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReadMDParameters.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRealCellsInRangeOfSegment.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudReferredCellsInRangeOfSegment.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlaps.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCells.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsRealCellsCalculationStep.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudRemoveHighEnergyOverlapsReferredCells.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestEdgeEdgeDistance.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/moleculeCloud/moleculeCloudTestPointFaceDistance.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referralLists/receivingReferralList.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCell/referredCell.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCell/referredCellI.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCellList/referredCellList.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCellList/referredCellList.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredCellList/referredCellListI.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredMolecule/referredMolecule.C delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredMolecule/referredMolecule.H delete mode 100644 src/lagrangian/molecularDynamics/molecule/referredMolecule/referredMoleculeI.H create mode 100644 src/lduSolvers/lduPrecon/ILU0/ILU0.C rename src/{lagrangian/molecularDynamics/molecule/referralLists/sendingReferralList.H => lduSolvers/lduPrecon/ILU0/ILU0.H} (53%) rename src/{lagrangian/molecularDynamics/molecule/referralLists/receivingReferralListI.H => sampling/cuttingPlane/cuttingPlaneTemplates.C} (76%) rename src/sampling/sampledSet/writers/jplot/{gnuplotSetWriter.C => jplotSetWriter.C} (84%) rename src/sampling/sampledSet/writers/jplot/{gnuplotSetWriter.H => jplotSetWriter.H} (63%) rename src/{lagrangian/molecularDynamics/molecule/referralLists/sendingReferralListI.H => thermophysicalModels/basic/mixtures/basicMixture/basicMixtures.C} (61%) delete mode 100644 src/thermophysicalModels/chemistryModel/binaryNode/binaryNode.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryNode/binaryNode.H delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTree.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTree.H delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeAdd.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeClean.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeI.H delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeInsert.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeScan.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/binaryTreeSearch.C delete mode 100644 src/thermophysicalModels/chemistryModel/binaryTree/calculatevTa.H delete mode 100644 src/thermophysicalModels/chemistryModel/chemistryOnlineLibrary/chemistryOnlineLibrary.C delete mode 100644 src/thermophysicalModels/chemistryModel/chemistryOnlineLibrary/chemistryOnlineLibrary.H create mode 100644 src/thermophysicalModels/solids/solid/newSolid.C create mode 100644 src/turbulenceModels/compressible/RAS/kOmegaSST_LowRe/checkkOmega_LowRePatchFieldTypes.H delete mode 100644 tutorials/MRFSimpleFoam/mixerVessel2D/constant/polyMesh/sets/rotor delete mode 100644 tutorials/MRFSimpleFoam/mixerVessel2D/constant/polyMesh/sets/rotor_old delete mode 100644 tutorials/compressibleLesInterFoam/depthCharge3D/system/machines delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.05 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.1 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.15 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.2 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.25 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.3 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.35 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.4 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.45 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.5 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.55 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.6 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.65 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.7 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.75 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.8 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.85 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.9 delete mode 120000 tutorials/conjugateHeatFoam/heatedBlock/0.95 delete mode 100644 tutorials/interDyMFoam/damBreakWithObstacle/VTK/c0/c0_1.vtk delete mode 100644 tutorials/interDyMFoam/damBreakWithObstacle/constant/polyMesh/sets/c0 delete mode 100644 tutorials/interDyMFoam/damBreakWithObstacle/constant/polyMesh/sets/c0_old delete mode 100644 tutorials/lesInterFoam/nozzleFlow2D/constant/polyMesh/sets/c0 delete mode 100644 tutorials/lesInterFoam/nozzleFlow2D/constant/polyMesh/sets/c0_old delete mode 100644 tutorials/lesInterFoam/nozzleFlow2D/constant/polyMesh/sets/refinedCells delete mode 100644 tutorials/rhoCentralFoam/LadenburgJet60psi/system/machines diff --git a/applications/solvers/compressible/sonicFoam/UEqn.H b/applications/solvers/compressible/sonicFoam/UEqn.H new file mode 100644 index 000000000..25506783a --- /dev/null +++ b/applications/solvers/compressible/sonicFoam/UEqn.H @@ -0,0 +1,8 @@ +fvVectorMatrix UEqn +( + fvm::ddt(rho, U) + + fvm::div(phi, U) + + turbulence->divDevRhoReff(U) +); + +solve(UEqn == -fvc::grad(p)); diff --git a/applications/solvers/incompressible/shallowWaterFoam/readGravitationalAcceleration.H b/applications/solvers/incompressible/shallowWaterFoam/readGravitationalAcceleration.H index d609c1861..0e34b0fa1 100644 --- a/applications/solvers/incompressible/shallowWaterFoam/readGravitationalAcceleration.H +++ b/applications/solvers/incompressible/shallowWaterFoam/readGravitationalAcceleration.H @@ -15,7 +15,7 @@ IOdictionary gravitationalProperties const dimensionedVector g(gravitationalProperties.lookup("g")); const Switch rotating(gravitationalProperties.lookup("rotating")); const dimensionedVector Omega = - rotating ? gravitationalProperties.lookup("Omega") + rotating ? dimensionedVector(gravitationalProperties.lookup("Omega")) : dimensionedVector("Omega", -dimTime, vector(0,0,0)); const dimensionedScalar magg = mag(g); const dimensionedVector gHat = g/magg; diff --git a/applications/utilities/errorEstimation/estimateScalarError/estimateScalarError.C b/applications/utilities/errorEstimation/estimateScalarError/estimateScalarError.C index a18c2adad..a7f0527c8 100644 --- a/applications/utilities/errorEstimation/estimateScalarError/estimateScalarError.C +++ b/applications/utilities/errorEstimation/estimateScalarError/estimateScalarError.C @@ -39,24 +39,17 @@ Description int main(int argc, char *argv[]) { + timeSelector::addOptions(); -# include "addTimeOptions.H" # include "setRootCase.H" - - Info<< "\nEstimating error in scalar transport equation\n" << endl; - # include "createTime.H" - // Get times list - instantList Times = runTime.times(); - -# include "checkTimeOptions.H" - - runTime.setTime(Times[startTime], startTime); + instantList timeDirs = timeSelector::select0(runTime, args); # include "createMesh.H" - Info<< "Reading transportProperties\n" << endl; + Info<< "\nEstimating error in scalar transport equation\n" + << "Reading transportProperties\n" << endl; IOdictionary transportProperties ( @@ -79,9 +72,9 @@ int main(int argc, char *argv[]) ); - for (label i=startTime; i::iterator cg = cellGroupZoneID.begin(); - SLList