From bd6f079b529f5a374e71133f8e831d46df2b58cf Mon Sep 17 00:00:00 2001 From: Gregor Weiss Date: Mon, 25 Sep 2023 16:54:23 +0200 Subject: [PATCH] ENH: Add ADIOS2 2.9.1 to ThirdParty --- ThirdParty/AllClean.stage3 | 4 + ThirdParty/AllMake.stage3 | 14 ++ ThirdParty/rpmBuild/SPECS/ADIOS2-2.9.1.spec | 201 ++++++++++++++++++++ etc/bashrc | 1 + etc/settings.sh | 18 ++ 5 files changed, 238 insertions(+) create mode 100644 ThirdParty/rpmBuild/SPECS/ADIOS2-2.9.1.spec diff --git a/ThirdParty/AllClean.stage3 b/ThirdParty/AllClean.stage3 index e3dbba1b0..4b7a7a72c 100755 --- a/ThirdParty/AllClean.stage3 +++ b/ThirdParty/AllClean.stage3 @@ -80,6 +80,10 @@ uninstallPackage PyFoam-0.6.4 $1 uninstallPackage hwloc-1.10.1 $1 uninstallPackage hwloc-1.7.2 $1 +# adios2 +uninstallPackage ADIOS2-2.9.1 $1 +rm -f $WM_THIRD_PARTY_DIR/rpmBuild/SOURCES/v2.9.1.tar.gz # manual because of skewed naming from download + echo echo ======================================== echo Done ThirdParty AllClean: Stage3 diff --git a/ThirdParty/AllMake.stage3 b/ThirdParty/AllMake.stage3 index ca6169a36..06d0ff396 100755 --- a/ThirdParty/AllMake.stage3 +++ b/ThirdParty/AllMake.stage3 @@ -235,6 +235,20 @@ else echo "" fi +# ADIOS2 +if [ -z "$ADIOS2_SYSTEM" ] +then + # ADIOS2 2.9.1 + # + [ ! -z "$WM_THIRD_PARTY_USE_ADIOS2_291" ] && { + echo "Building ADIOS2 2.9.1" + ( rpm_make -p ADIOS2-2.9.1 -s ADIOS2-2.9.1.spec -u https://github.com/ornladios/ADIOS2/archive/v2.9.1.tar.gz ) + } +else + echo "Using system installed ADIOS2" + echo "" +fi + echo ======================================== echo Done ThirdParty AllMake: Stage3 echo ======================================== diff --git a/ThirdParty/rpmBuild/SPECS/ADIOS2-2.9.1.spec b/ThirdParty/rpmBuild/SPECS/ADIOS2-2.9.1.spec new file mode 100644 index 000000000..4fe05e139 --- /dev/null +++ b/ThirdParty/rpmBuild/SPECS/ADIOS2-2.9.1.spec @@ -0,0 +1,201 @@ +#------------------------------------------------------------------------------ +# ========= | +# \\ / F ield | foam-extend: Open Source CFD +# \\ / O peration | +# \\ / A nd | For copyright notice see file Copyright +# \\/ M anipulation | +#------------------------------------------------------------------------------ +# License +# This file is part of foam-extend. +# +# foam-extend is free software: you can redistribute it and/or modify it +# under the terms of the GNU General Public License as published by the +# Free Software Foundation, either version 3 of the License, or (at your +# option) any later version. +# +# foam-extend is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with foam-extend. If not, see . +# +# Script +# RPM spec file for ADIOS2-2.9.1 +# +# Description +# RPM spec file for creating a relocatable RPM +# +# Author +# Gregor Weiss, HLRS (2023) +# +#------------------------------------------------------------------------------ + +# We grab the value of WM_THIRD_PARTY and WM_OPTIONS from the environment variable +%{expand:%%define _WM_THIRD_PARTY_DIR %(echo $WM_THIRD_PARTY_DIR)} +%{expand:%%define _WM_OPTIONS %(echo $WM_OPTIONS)} + +# Disable the generation of debuginfo packages +%define debug_package %{nil} + +# The topdir needs to point to the $WM_THIRD_PARTY/rpmbuild directory +%define _topdir %{_WM_THIRD_PARTY_DIR}/rpmBuild +%define _tmppath %{_topdir}/tmp + +# Will install the package directly $WM_THIRD_PARTY_DIR +# Some comments about package relocation: +# By using this prefix for the Prefix: parameter in this file, you will make this +# package relocatable. +# +# This is fine, as long as your software is itself relocatable. +# +# Simply take note that libraries built with libtool are not relocatable because the +# prefix we specify will be hard-coded in the library .la files. +# Ref: http://sourceware.org/autobook/autobook/autobook_80.html +# +# In that case, if you ever change the value of the $WM_THIRD_PARTY_DIR, you will +# not be able to reutilize this RPM, even though it is relocatable. You will need to +# regenerate the RPM. +# +%define _prefix %{_WM_THIRD_PARTY_DIR} + +%define name ADIOS2 +%define release %{_WM_OPTIONS} +%define version 2.9.1 + +%define buildroot %{_topdir}/BUILD/%{name}-%{version}-root + +BuildRoot: %{buildroot} +Summary: ADIOS2 +License: Unkown +Name: %{name} +Version: %{version} +Release: %{release} +URL: https://github.com/ornladios/ADIOS2/archive/ +Source: %url/v%{version}.tar.gz +Prefix: %{_prefix} +Group: Development/Tools + +%define _installPrefix %{_prefix}/packages/%{name}-%{version}/platforms/%{_WM_OPTIONS} + + +%description +%{summary} + +%prep +%setup -q + +%build +# +# set CMake cache variables +# + addCMakeVariable() + { + while [ -n "$1" ] + do + CMAKE_VARIABLES="$CMAKE_VARIABLES -D$1" + shift + done + } + + # export WM settings in a form that GNU configure recognizes + [ -n "$WM_CC" ] && export CC="$WM_CC" + [ -n "$WM_CXX" ] && export CXX="$WM_CXX" + [ -n "$WM_CFLAGS" ] && export CFLAGS="$WM_CFLAGS" + [ -n "$WM_CXXFLAGS" ] && export CXXFLAGS="$WM_CXXFLAGS" + [ -n "$WM_LDFLAGS" ] && export LDFLAGS="$WM_LDFLAGS" + + # start with these general settings + addCMakeVariable BUILD_SHARED_LIBS:BOOL=ON + addCMakeVariable CMAKE_BUILD_TYPE:STRING=Release + + echo "CMAKE_VARIABLES: $CMAKE_VARIABLES" + + mkdir -p ./buildObj + cd ./buildObj + + cmake \ + -DCMAKE_INSTALL_PREFIX:PATH=%{_installPrefix} \ + $CMAKE_VARIABLES \ + .. + + [ -z "$WM_NCOMPPROCS" ] && WM_NCOMPPROCS=1 + make -j $WM_NCOMPPROCS + +%install + + cd buildObj + make install + + # Creation of foam-extend specific .csh and .sh files" + + echo "" + echo "Generating foam-extend specific .csh and .sh files for the package %{name}-%{version}" + echo "" + # + # Generate package specific .sh file for foam-extend + # +mkdir -p $RPM_BUILD_ROOT/%{_installPrefix}/etc +cat << DOT_SH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.sh +# Load %{name}-%{version} binaries if available +# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +export ADIOS2_DIR=\$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS +export ADIOS2_BIN_DIR=\$ADIOS2_DIR/bin +export ADIOS2_LIB_DIR=\$ADIOS2_DIR/lib +export ADIOS2_INCLUDE_DIR=\$ADIOS2_DIR/include +export ADIOS2_INCLUDE_CXX11_DIR=\$ADIOS2_DIR/include/adios2/cxx11/ +export ADIOS2_INCLUDE_COMMON_DIR=\$ADIOS2_DIR/include/adios2/common/ + +export ADIOS2_VERSION=%{version} + +# Enable access to the package applications if present +[ -d \$ADIOS2_BIN_DIR ] && _foamAddPath \$ADIOS2_BIN_DIR +[ -d \$ADIOS2_LIB_DIR ] && _foamAddLib \$ADIOS2_LIB_DIR + +export ADIOS2_LIBS=\$(adios2-config --cxx-libs) +export ADIOS2_FLAGS=\$(adios2-config --cxx-flags) + +DOT_SH_EOF + + # + # Generate package specific .csh file for foam-extend + # +cat << DOT_CSH_EOF > $RPM_BUILD_ROOT/%{_installPrefix}/etc/%{name}-%{version}.csh +# Load %{name}-%{version} binaries if available +# ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +setenv ADIOS2_DIR \$WM_THIRD_PARTY_DIR/packages/%{name}-%{version}/platforms/\$WM_OPTIONS +setenv ADIOS2_BIN_DIR \$ADIOS2_DIR/bin +setenv ADIOS2_LIB_DIR \$ADIOS2_DIR/lib +setenv ADIOS2_INCLUDE_DIR \$ADIOS2_DIR/include +setenv ADIOS2_INCLUDE_CXX11_DIR \$ADIOS2_DIR/include/adios2/cxx11/ +setenv ADIOS2_INCLUDE_COMMON_DIR \$ADIOS2_DIR/include/adios2/common/ + +setenv ADIOS2_VERSION %{version} + +if ( -e \$ADIOS2_BIN_DIR ) then + _foamAddPath \$ADIOS2_BIN_DIR +endif + +if ( -e \$ADIOS2_LIB_DIR ) then + _foamAddLib \$ADIOS2_LIB_DIR +endif + +setenv ADIOS2_LIBS $(adios2-config --cxx-libs) +setenv ADIOS2_FLAGS $(adios2-config --cxx-flags) + +DOT_CSH_EOF + + (cd %{_prefix}; mv $RPM_BUILD_ROOT/%{_installPrefix}/etc %{_installPrefix}) + #finally, generate a .tgz file for systems where using rpm for installing packages + # as a non-root user might be a problem. + (mkdir -p %{_topdir}/TGZS/%{_target_cpu}; cd %{_prefix}; tar -zcf %{_topdir}/TGZS/%{_target_cpu}/%{name}-%{version}.tgz packages/%{name}-%{version}) + +%clean + +%files +%defattr(-,root,root) +%{_installPrefix} + + diff --git a/etc/bashrc b/etc/bashrc index 0e0720bed..9ddc4dcac 100755 --- a/etc/bashrc +++ b/etc/bashrc @@ -112,6 +112,7 @@ export PARMETIS_SYSTEM=1 #export WM_THIRD_PARTY_USE_PARMETIS_403=1 export WM_THIRD_PARTY_USE_PYFOAM_069=1 export WM_THIRD_PARTY_USE_HWLOC_201=1 +export WM_THIRD_PARTY_USE_ADIOS2_291=1 # # For AllMake.stage4 diff --git a/etc/settings.sh b/etc/settings.sh index 90f64f663..59822f8d4 100755 --- a/etc/settings.sh +++ b/etc/settings.sh @@ -829,6 +829,24 @@ fi } [ "$FOAM_VERBOSE" -a "$PS1" ] && echo " MESA_DIR is initialized to: $MESA_DIR" +# Load ADIOS2 library +# ~~~~~~~~~~~~~~~~~~ +if [ ! -z "$ADIOS2_SYSTEM" ] +then + # Using system libraries. + export ADIOS2_LIBS=$(adios2-config --cxx-libs) + export ADIOS2_FLAGS=$(adios2-config --cxx-flags) + # TODO: System ADIOS2 is not sufficiently configured. +else + # Using ThirdParty package for ADIOS2 2.9.1 + [ -z $WM_THIRD_PARTY_USE_ADIOS_291 ] && [ -e $WM_THIRD_PARTY_DIR/packages/ADIOS2-2.9.1/platforms/$WM_OPTIONS ] && { + _foamSource $WM_THIRD_PARTY_DIR/packages/ADIOS2-2.9.1/platforms/$WM_OPTIONS/etc/ADIOS2-2.9.1.sh + } + +fi +[ "$FOAM_VERBOSE" -a "$PS1" ] && echo " ADIOS2_LIBS is initialized to: $ADIOS2_LIBS" + + # cleanup environment: # ~~~~~~~~~~~~~~~~~~~~