Merge commit '10725e9' into nextRelease

Conflicts:
	ListOfContributors

ListOfContributors

@@ -1,13 +1,19 @@
 #                            -*- mode: org; -*-
 #
-#+TITLE:          *Cumulative List of Contributors for foam-extend-3.1*
-#+AUTHOR:                      Hrvoje Jasak
-#+DATE:                        8 June 2014
+#+TITLE:          *Cumulative List of Contributors for foam-extend-3.0*
+#+AUTHOR:                      Hrvoje Jasak.
+#+DATE:                       10 January 2014
 #+LINK:                  http://foam-extend.org
 #+OPTIONS: author:nil
 
 ################################################################################
 
+Contents:
+* List of Contributors
+
+################################################################################
+
+
 * List of Contributors
 
     (If your name is missing in the list, please contact the maintainers at
@@ -43,6 +49,7 @@
     Peter Janas
     Mattijs Janssens
     Klas Jareteg
+    Franjo Juretic
     Aleksandar Karac
     Dennis Kingsley
     Nikola Kornev

applications/utilities/mesh/cfMesh/FLMAToSurface/FLMAToSurface.C

@@ -0,0 +1,146 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Reads the AVL's surface mesh
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "triSurf.H"
+#include "triSurfModifier.H"
+#include "triFaceList.H"
+#include "labelLongList.H"
+#include "IFstream.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+
+    if( inFileName.ext() != "flma" )
+    {
+        Info << "Cannot convert this mesh" << endl;
+        return 0;
+    }
+
+    //- create the surface mesh
+    triSurf ts;
+    triSurfModifier tsm(ts);
+
+    label counter;
+
+    IFstream inFile(inFileName);
+
+    inFile >> counter;
+
+    //- read vertices
+    pointField& points = tsm.pointsAccess();
+    points.setSize(counter);
+    forAll(points, pointI)
+    {
+        point& p = points[pointI];
+
+        inFile >> p.x();
+        inFile >> p.y();
+        inFile >> p.z();
+    }
+
+    //- read facets
+    inFile >> counter;
+    geometricSurfacePatchList patches(1);
+    patches[0].name() = "patch";
+    LongList<labelledTri>& triangles = tsm.facetsAccess();
+    triangles.setSize(counter);
+    forAll(triangles, triI)
+    {
+        inFile >> counter;
+
+        if( counter != 3 )
+        {
+            Info << "Facet " << triI << " is not a triangle!!" << endl;
+            Warning << "Cannot convert this surface!" << endl;
+            return 0;
+        }
+
+        for(label j=0;j<3;++j)
+            inFile >> triangles[triI][2-j];
+
+        triangles[triI].region() = 0;
+    }
+
+    //- read cell types
+    inFile >> counter;
+    forAll(triangles, triI)
+        inFile >> counter;
+
+    //- start reading selections
+    inFile >> counter;
+    for(label selI=0;selI<counter;++selI)
+    {
+        //- read selection name
+        word selName;
+        inFile >> selName;
+
+        //- read selection type
+        label selType;
+        inFile >> selType;
+
+        //- read selection entries
+        label size;
+        inFile >> size;
+        labelLongList entries(size);
+        for(label i=0;i<size;++i)
+            inFile >> entries[i];
+
+        //- store cell selections
+        if( selType == 2 )
+        {
+            Info << "Adding subset " << selName << endl;
+            const label setID = ts.addFacetSubset(selName);
+
+            forAll(entries, i)
+                ts.addFacetToSubset(setID, entries[i]);
+        }
+    }
+
+    //- write the surface
+    ts.writeSurface(outFileName);
+
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/FLMAToSurface/Make/files

@@ -0,0 +1,3 @@
+FLMAToSurface.C
+
+EXE = $(FOAM_APPBIN)/FLMAToSurface

applications/utilities/mesh/cfMesh/FLMAToSurface/Make/options

@@ -0,0 +1,6 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/FPMAToMesh/FPMAToMesh.C

@@ -0,0 +1,216 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Writes the mesh in fpma format readable by AVL's CfdWM
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "polyMeshGenModifier.H"
+#include "IFstream.H"
+
+#include "Map.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{ 
+
+#   include "setRootCase.H"
+#   include "createTime.H"
+
+    fileName inFileName;
+    
+    Info << "Reading mesh from file " << endl;
+    cin >> inFileName;
+    
+    IFstream file(inFileName);
+
+    polyMeshGen pmg(runTime);
+    polyMeshGenModifier meshModifier(pmg);
+    
+    label counter;
+    
+    //- read the number of vertices
+    pointFieldPMG& points = meshModifier.pointsAccess();
+    file >> counter;
+    
+    //- read points from file
+    points.setSize(counter);
+    forAll(points, pointI)
+    {
+    point p;
+    file >> p.x();
+    file >> p.y();
+    file >> p.z();
+    
+    points[pointI] = p;
+    }
+    
+    //- read the number of faces
+    file >> counter;
+    
+    faceListPMG& faces = meshModifier.facesAccess();
+    
+    //- read faces from file
+    faces.setSize(counter);
+    forAll(faces, faceI)
+    {
+        file >> counter;
+    
+    face f;
+    f.setSize(counter);
+    
+    forAll(f, pI)
+      file >> f[pI];
+    
+    faces[faceI] = f.reverseFace();
+    }
+    
+    //- read the number of cells
+    file >> counter;
+    
+    //- read cells from file
+    cellListPMG& cells = meshModifier.cellsAccess();
+    cells.setSize(counter);
+    
+    forAll(cells, cellI)
+    {
+    file >> counter;
+    
+    cell& c = cells[cellI];
+    
+    c.setSize(counter);
+    
+    forAll(c, fI)
+        file >> c[fI];
+    }
+    
+    //- read selections
+    file >> counter;
+    
+    wordList patchNames;
+    Map<label> subsetToPatch;
+    
+    for(label setI=0;setI<counter;++setI)
+    {
+    word sName;
+    file >> sName;
+    
+    label type;
+    file >> type;
+    
+    label nEntries;
+    file >> nEntries;
+    
+    switch( type )
+    {
+        case 3:
+        {
+        //- face selection
+        const label id = pmg.addFaceSubset(sName);
+        
+        patchNames.setSize(patchNames.size()+1);
+        patchNames[patchNames.size()-1] = sName;
+        subsetToPatch.insert(id, patchNames.size()-1);
+        
+        Info << "Reading face selection " << sName << endl;
+        
+        for(label i=0;i<nEntries;++i)
+        {
+            label entryI;
+            file >> entryI;
+            pmg.addFaceToSubset(id, entryI);
+        }
+        } break;
+        case 2:
+        {
+        //- cell selection
+        const label id = pmg.addCellSubset(sName);
+        
+        for(label i=0;i<nEntries;++i)
+        {
+            label entryI;
+            file >> entryI;
+            pmg.addCellToSubset(id, entryI);
+        }
+        } break;
+        case 1:
+        {
+        //- node selection
+        const label id = pmg.addPointSubset(sName);
+        
+        for(label i=0;i<nEntries;++i)
+        {
+            label entryI;
+            file >> entryI;
+            pmg.addPointToSubset(id, entryI);
+        }
+        } break;
+    };
+    }
+    
+    //- create patches from face selections
+    VRWGraph boundaryFaces;
+    labelLongList boundaryOwner;
+    labelLongList boundaryPatches;
+    
+    const labelList& owner = pmg.owner();
+    DynList<label> faceSubsets;
+    pmg.faceSubsetIndices(faceSubsets);
+    
+    forAll(faceSubsets, setI)
+    {
+    labelLongList setFaces;
+    pmg.facesInSubset(faceSubsets[setI], setFaces);
+    
+    forAll(setFaces, i)
+    {
+        boundaryFaces.appendList(faces[setFaces[i]]);
+        boundaryOwner.append(owner[setFaces[i]]);
+        boundaryPatches.append(subsetToPatch[faceSubsets[setI]]);
+    }
+    
+    pmg.removeFaceSubset(faceSubsets[setI]);
+    }
+    
+    meshModifier.reorderBoundaryFaces();
+    meshModifier.replaceBoundary
+    (
+    patchNames,
+    boundaryFaces,
+    boundaryOwner,
+    boundaryPatches
+    );
+    
+    pmg.write();
+    
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/FPMAToMesh/Make/files

@@ -0,0 +1,3 @@
+FPMAToMesh.C
+
+EXE = $(FOAM_APPBIN)/FPMAToMesh

applications/utilities/mesh/cfMesh/FPMAToMesh/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -lmeshLibrary \
+    -lmeshTools

applications/utilities/mesh/cfMesh/cartesian2DMesh/Make/files

@@ -0,0 +1,3 @@
+cartesian2DMesh.C
+
+EXE = $(FOAM_APPBIN)/cartesian2DMesh

applications/utilities/mesh/cfMesh/cartesian2DMesh/Make/options

@@ -0,0 +1,11 @@
+EXE_INC = \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude
+
+EXE_LIBS = \
+    -lmeshTools \
+    -ltriSurface \
+    -lfiniteVolume \
+    -lmeshLibrary

applications/utilities/mesh/cfMesh/cartesian2DMesh/cartesian2DMesh.C

@@ -0,0 +1,61 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Application
+    Generates cartesian mesh
+
+Description
+    Generates a 2D cartesian mesh
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "cartesian2DMeshGenerator.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+
+    //- 2d cartesian mesher cannot be run in parallel
+    argList::noParallel();
+
+    cartesian2DMeshGenerator cmg(runTime);
+
+    Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s\n"
+        << "ClockTime = " << runTime.elapsedClockTime() << " s" << endl;
+
+    cmg.writeMesh();
+
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/cartesianMesh/Make/files

@@ -0,0 +1,3 @@
+cartesianMesh.C
+
+EXE = $(FOAM_APPBIN)/cartesianMesh

applications/utilities/mesh/cfMesh/cartesianMesh/Make/options

@@ -0,0 +1,11 @@
+EXE_INC = \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude
+
+EXE_LIBS = \
+    -lmeshTools \
+    -ltriSurface \
+    -lfiniteVolume \
+    -lmeshLibrary

applications/utilities/mesh/cfMesh/cartesianMesh/cartesianMesh.C

@@ -0,0 +1,59 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Application
+    Generates cartesian mesh
+
+Description
+    - takes a triangulated surface and generates a cartesian mesh
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "objectRegistry.H"
+#include "Time.H"
+#include "cartesianMeshGenerator.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+
+    cartesianMeshGenerator cmg(runTime);
+
+    Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s\n"
+        << "ClockTime = " << runTime.elapsedClockTime() << " s" << endl;
+
+    cmg.writeMesh();
+
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/copySurfaceParts/Make/files

@@ -0,0 +1,3 @@
+copySurfaceParts.C
+
+EXE = $(FOAM_APPBIN)/copySurfaceParts

applications/utilities/mesh/cfMesh/copySurfaceParts/Make/options

@@ -0,0 +1,6 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/copySurfaceParts/copySurfaceParts.C

@@ -0,0 +1,80 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Finds feature edges and corners of a triangulated surface
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "IFstream.H"
+#include "fileName.H"
+#include "triSurf.H"
+#include "demandDrivenData.H"
+
+#include "triSurfaceCopyParts.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Main program:
+using namespace Foam;
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList::validArgs.append("patch/subset name");
+    argList args(argc, argv);
+
+    const fileName inFileName(args.args()[1]);
+    const fileName outFileName(args.args()[2]);
+
+    if( outFileName == inFileName )
+    {
+        FatalErrorIn(args.executable())
+            << "Output file " << outFileName
+            << " would overwrite the input file."
+            << exit(FatalError);
+    }
+
+    wordList patches(1);
+    patches[0] = args.args()[3];
+
+    triSurf originalSurface(inFileName);
+
+    triSurfaceCopyParts copyPart(originalSurface);
+
+    triSurf copy;
+
+    copyPart.copySurface(patches, copy);
+
+    copy.writeSurface(outFileName);
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/extrudeEdgesInto2DSurface/Make/files

@@ -0,0 +1,3 @@
+extrudeEdgesInto2DSurface.C
+
+EXE = $(FOAM_APPBIN)/extrudeEdgesInto2DSurface

applications/utilities/mesh/cfMesh/extrudeEdgesInto2DSurface/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/extrudeEdgesInto2DSurface/extrudeEdgesInto2DSurface.C

@@ -0,0 +1,74 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Reads the surface mesh, remove the selected facets
+    and writes the modified mesh into a new file
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "triSurf.H"
+#include "triSurfaceExtrude2DEdges.H"
+#include "demandDrivenData.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+
+    //- read the input surface
+    triSurf origSurf(inFileName);
+
+    //- remove the selected facets
+    triSurfaceExtrude2DEdges extruder(origSurf);
+
+    const triSurf* newSurfacePtr = extruder.extrudeSurface();
+
+    if( !newSurfacePtr )
+        FatalError << "Extruding of the edge mesh failed!" << exit(FatalError);
+
+    //- write the modified surface mesh
+    newSurfacePtr->writeSurface(outFileName);
+
+    deleteDemandDrivenData(newSurfacePtr);
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/meshToFPMA/Make/files

@@ -0,0 +1,3 @@
+meshToFPMA.C
+
+EXE = $(FOAM_APPBIN)/meshToFPMA

applications/utilities/mesh/cfMesh/meshToFPMA/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -lmeshLibrary \
+    -lmeshTools

applications/utilities/mesh/cfMesh/meshToFPMA/meshToFPMA.C

@@ -0,0 +1,58 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Writes the mesh in fpma format readable by AVL's CfdWM
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "polyMeshGenModifier.H"
+#include "writeMeshFPMA.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+
+    polyMeshGen pmg(runTime);
+    pmg.read();
+    
+    if( Pstream::parRun() )
+    {
+        polyMeshGenModifier(pmg).addBufferCells();
+        createFIRESelections(pmg);
+    }
+    
+    writeMeshFPMA(pmg, "convertedMesh");
+    
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/patchesToSubsets/Make/files

@@ -0,0 +1,3 @@
+patchesToSubsets.C
+
+EXE = $(FOAM_APPBIN)/patchesToSubsets

applications/utilities/mesh/cfMesh/patchesToSubsets/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/patchesToSubsets/patchesToSubsets.C

@@ -0,0 +1,84 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Reads the AVL's surface mesh
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "triSurf.H"
+#include "triFaceList.H"
+#include "labelLongList.H"
+#include "IFstream.H"
+#include "OFstream.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+
+    if( outFileName.ext() != "fms" )
+        Warning << "The subsets cann only be saved in the .fms format" << endl;
+
+    triSurf origSurf(inFileName);
+
+    wordList patchNames(origSurf.patches().size());
+    forAll(origSurf.patches(), patchI)
+        patchNames[patchI] = origSurf.patches()[patchI].name();
+
+    forAll(patchNames, patchI)
+    {
+        labelLongList subsetFacets;
+        forAll(origSurf, triI)
+        {
+            if( origSurf[triI].region() == patchI )
+                subsetFacets.append(triI);
+        }
+
+        const label subsetId = origSurf.addFacetSubset(patchNames[patchI]);
+
+        forAll(subsetFacets, i)
+            origSurf.addFacetToSubset(subsetId, subsetFacets[i]);
+    }
+
+    origSurf.writeSurface(outFileName);
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/preparePar/Make/files

@@ -0,0 +1,3 @@
+preparePar.C
+
+EXE = $(FOAM_APPBIN)/preparePar

applications/utilities/mesh/cfMesh/preparePar/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/meshTools/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshTools -lmeshLibrary

applications/utilities/mesh/cfMesh/preparePar/preparePar.C

@@ -0,0 +1,100 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Application
+    Prepares the case for a parallel mesh generation run
+
+Description
+    - creates processor* directories which contain data for processors
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+
+#include <sstream>
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+    
+    IOdictionary meshDict
+    (
+        IOobject
+        (
+            "meshDict",
+            runTime.system(),
+            runTime,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    );
+    
+    IOdictionary decomposeParDict
+    (
+        IOobject
+        (
+            "decomposeParDict",
+            runTime.system(),
+            runTime,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    );
+    
+    const label nProcessors
+    (
+        readLabel(decomposeParDict.lookup("numberOfSubdomains"))
+    );
+    
+    for(label procI=0;procI<nProcessors;++procI)
+    {
+        fileName file("processor");
+        std::ostringstream ss;
+        ss << procI;
+        file += ss.str();
+        Info << "Creating " << file << endl;
+        
+        //- create a directory for processor data
+        mkDir(runTime.path()/file);
+        
+        //- copy the contents of the const directory into processor*
+        cp(runTime.path()/"constant", runTime.path()/file);
+
+        //- generate 0 directories for
+	mkDir(runTime.path()/file/"0");
+    }
+    
+    Info << "End\n" << endl;
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/removeSurfaceFacets/Make/files

@@ -0,0 +1,3 @@
+removeSurfaceFacets.C
+
+EXE = $(FOAM_APPBIN)/removeSurfaceFacets

applications/utilities/mesh/cfMesh/removeSurfaceFacets/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/removeSurfaceFacets/removeSurfaceFacets.C

@@ -0,0 +1,72 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Reads the surface mesh, remove the selected facets
+    and writes the modified mesh into a new file
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "triSurf.H"
+#include "triSurfaceRemoveFacets.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList::validArgs.append("Subset/patch name");
+
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+    word patchName(args.args()[3]);
+
+    //- read the input surface
+    triSurf origSurf(inFileName);
+
+    //- remove the selected facets
+    triSurfaceRemoveFacets rsf(origSurf);
+
+    rsf.selectFacetsInPatch(patchName);
+
+    rsf.removeFacets();
+
+    //- write the modified surface mesh
+    origSurf.writeSurface(outFileName);
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/subsetToPatch/Make/files

@@ -0,0 +1,3 @@
+subsetToPatch.C
+
+EXE = $(FOAM_APPBIN)/subsetToPatch

applications/utilities/mesh/cfMesh/subsetToPatch/Make/options

@@ -0,0 +1,7 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(FOAM_SRC)/meshTools/lnInclude \
+    -I$(FOAM_SRC)/triSurface/lnInclude
+
+EXE_LIBS = \
+    -ltriSurface -lmeshTools -lmeshLibrary

applications/utilities/mesh/cfMesh/subsetToPatch/subsetToPatch.C

@@ -0,0 +1,170 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Creates surface patches from surface subsets
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "triSurf.H"
+#include "demandDrivenData.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void makePatchFromSubset
+(
+    triSurf& origSurf,
+    const DynList<word>& subsetNames
+)
+{
+    //- create new list of patches
+    geometricSurfacePatchList newPatches
+    (
+        origSurf.patches().size() + subsetNames.size()
+    );
+
+    //- set names of the new patches
+    forAll(origSurf.patches(), patchI)
+        newPatches[patchI].name() = origSurf.patches()[patchI].name();
+
+    forAll(subsetNames, subsetI)
+        newPatches[origSurf.patches().size()+subsetI].name() =
+            subsetNames[subsetI];
+
+    //- create new triangles
+    LongList<labelledTri> newTriangles(origSurf.facets());
+
+    //- set patches for all triangles
+    forAll(subsetNames, subsetI)
+    {
+        const label subsetID = origSurf.facetSubsetIndex(subsetNames[subsetI]);
+
+        labelLongList subsetFaces;
+        origSurf.facetsInSubset(subsetID, subsetFaces);
+
+        const label regionI = origSurf.patches().size() + subsetI;
+
+        forAll(subsetFaces, fI)
+        {
+            newTriangles[subsetFaces[fI]].region() = regionI;
+        }
+    }
+
+    //- remove patches with no elements
+    labelList nTrianglesInPatch(newPatches.size(), 0);
+    forAll(newTriangles, triI)
+        ++nTrianglesInPatch[newTriangles[triI].region()];
+
+    Map<label> newPatchLabel;
+    label counter(0);
+    forAll(nTrianglesInPatch, patchI)
+    {
+        if( nTrianglesInPatch[patchI] )
+            newPatchLabel.insert(patchI, counter++);
+    }
+
+    geometricSurfacePatchList copyPatches(counter);
+    counter = 0;
+    forAll(newPatches, patchI)
+    {
+        if( newPatchLabel.found(patchI) )
+        {
+            copyPatches[newPatchLabel[patchI]].name() =
+                newPatches[patchI].name();
+        }
+    }
+
+    newPatches = copyPatches;
+
+    //- renumber the patches in the list of triangles
+    forAll(newTriangles, triI)
+        newTriangles[triI].region() =
+            newPatchLabel[newTriangles[triI].region()];
+
+    //- delete subsets converted to patches
+    forAll(subsetNames, subsetI)
+    {
+        const label subsetID = origSurf.facetSubsetIndex(subsetNames[subsetI]);
+        origSurf.removeFacetSubset(subsetID);
+    }
+
+    //- update subsets
+    origSurf.updateFacetsSubsets(newPatchLabel);
+}
+
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("subset");
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    word subsetName(args.args()[2]);
+
+    triSurf* origSurfPtr = new triSurf(inFileName);
+
+    DynList<word> subsetNames;
+    const label subsetID = origSurfPtr->facetSubsetIndex(subsetName);
+    if( subsetID >= 0 )
+    {
+        Warning << "Subset " << subsetName
+        << " checking subsets containing this string!" << endl;
+
+        DynList<label> existingSubsets;
+        origSurfPtr->facetSubsetIndices(existingSubsets);
+
+        forAll(existingSubsets, subsetI)
+        {
+            const word sName =
+                origSurfPtr->facetSubsetName(existingSubsets[subsetI]);
+
+            if( sName.substr(0, subsetName.size()) == subsetName )
+            {
+                subsetNames.append(sName);
+            }
+        }
+
+        Info << "Converting " << subsetNames.size() << " subsets" << endl;
+    }
+    else
+    {
+        subsetNames.append(subsetName);
+    }
+
+    makePatchFromSubset(*origSurfPtr, subsetNames);
+    origSurfPtr->writeSurface(inFileName);
+    deleteDemandDrivenData(origSurfPtr);
+
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/surfaceFeatureEdges/Make/files

@@ -0,0 +1,3 @@
+surfaceFeatureEdges.C
+
+EXE = $(FOAM_APPBIN)/surfaceFeatureEdges

applications/utilities/mesh/cfMesh/surfaceFeatureEdges/Make/options

@@ -0,0 +1,5 @@
+EXE_INC = -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/surfaceFeatureEdges/surfaceFeatureEdges.C

@@ -0,0 +1,104 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Finds feature edges and corners of a triangulated surface
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "IFstream.H"
+#include "fileName.H"
+#include "triSurf.H"
+#include "OFstream.H"
+#include "OSspecific.H"
+#include "demandDrivenData.H"
+#include <cstdlib>
+#include <sstream>
+
+#include "triSurfaceDetectFeatureEdges.H"
+#include "triSurfacePatchManipulator.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Main program:
+using namespace Foam;
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList::validOptions.insert("angle", "scalar");
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+
+    if (outFileName == inFileName)
+    {
+        FatalErrorIn(args.executable())
+            << "Output file " << outFileName
+            << " would overwrite the input file."
+            << exit(FatalError);
+    }
+
+    scalar tol(45.0);
+    if( args.options().found("angle") )
+    {
+        const scalar ang = readScalar(IStringStream(args.options()["angle"])());
+        tol = ang;
+    }
+    else
+    {
+        Info << "Using 45 deg as default angle!" << endl;
+    }
+
+    triSurf originalSurface(inFileName);
+
+    triSurfaceDetectFeatureEdges edgeDetector(originalSurface, tol);
+    edgeDetector.detectFeatureEdges();
+
+    if( outFileName.ext() == "fms" || outFileName.ext() == "FMS" )
+    {
+        Info << "Writing : " << outFileName << endl;
+        originalSurface.writeSurface(outFileName);
+    }
+    else
+    {
+        triSurfacePatchManipulator manipulator(originalSurface);
+        const triSurf* newSurfPtr = manipulator.surfaceWithPatches();
+
+        Info << "Writing : " << outFileName << endl;
+        newSurfPtr->writeSurface(outFileName);
+
+        deleteDemandDrivenData(newSurfPtr);
+    }
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/surfaceGenerateBoundingBox/Make/files

@@ -0,0 +1,3 @@
+surfaceGenerateBoundingBox.C
+
+EXE = $(FOAM_APPBIN)/surfaceGenerateBoundingBox

applications/utilities/mesh/cfMesh/surfaceGenerateBoundingBox/Make/options

@@ -0,0 +1,6 @@
+EXE_INC = \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude
+
+EXE_LIBS = -ltriSurface -lmeshLibrary -lmeshTools

applications/utilities/mesh/cfMesh/surfaceGenerateBoundingBox/surfaceGenerateBoundingBox.C

@@ -0,0 +1,181 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Finds feature edges and corners of a triangulated surface
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "IFstream.H"
+#include "fileName.H"
+#include "triSurface.H"
+#include "boundBox.H"
+#include "OFstream.H"
+#include <cstdlib>
+#include <sstream>
+
+#include "triSurfaceDetectFeatureEdges.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Main program:
+using namespace Foam;
+
+int main(int argc, char *argv[])
+{
+    argList::noParallel();
+    argList::validArgs.clear();
+    argList::validArgs.append("input surface file");
+    argList::validArgs.append("output surface file");
+    argList::validArgs.append("x-neg");
+    argList::validArgs.append("x-pos");
+    argList::validArgs.append("y-neg");
+    argList::validArgs.append("y-pos");
+    argList::validArgs.append("z-neg");
+    argList::validArgs.append("z-pos");
+
+    argList args(argc, argv);
+
+    fileName inFileName(args.args()[1]);
+    fileName outFileName(args.args()[2]);
+
+    if (outFileName == inFileName)
+    {
+        FatalErrorIn(args.executable())
+            << "Output file " << outFileName
+            << " would overwrite the input file."
+            << exit(FatalError);
+    }
+
+    triSurface origSurface(inFileName);
+    const pointField& points = origSurface.points();
+
+    const boundBox bb(points);
+
+    vector negOffset, posOffset;
+    for(label i=3;i<9;++i)
+    {
+        std::stringstream ss;
+        ss << args.args()[i];
+
+        scalar s;
+        ss >> s;
+
+        if( i % 2 )
+        {
+            negOffset[(i-3)/2] = s;
+        }
+        else
+        {
+            posOffset[(i-3)/2] = s;
+        }
+    }
+
+    Info << "Neg offset " << negOffset << endl;
+    Info << "Pos offset " << posOffset << endl;
+
+    const boundBox newBB(bb.min()-negOffset, bb.max()+posOffset);
+    Info << "Surface bounding box " << bb << endl;
+    Info << "Generated bounding box " << newBB << endl;
+
+    //- generate bounding box points
+    const label nPoints = points.size();
+    pointField newPoints(nPoints+8);
+    forAll(points, pointI)
+        newPoints[pointI] = points[pointI];
+
+    newPoints[nPoints] = newBB.min();
+    newPoints[nPoints+1] =
+        point(newBB.max().x(), newBB.min().y(), newBB.min().z());
+    newPoints[nPoints+2] =
+        point(newBB.min().x(), newBB.max().y(), newBB.min().z());
+    newPoints[nPoints+3] =
+        point(newBB.max().x(), newBB.max().y(), newBB.min().z());
+    newPoints[nPoints+4] =
+        point(newBB.min().x(), newBB.min().y(), newBB.max().z());
+    newPoints[nPoints+5] =
+        point(newBB.max().x(), newBB.min().y(), newBB.max().z());
+    newPoints[nPoints+6] =
+        point(newBB.min().x(), newBB.max().y(), newBB.max().z());
+    newPoints[nPoints+7] = newBB.max();
+
+    //- generate bounding bound triangles
+    const label nTriangles = origSurface.size();
+    List<labelledTri> newTriangles(nTriangles+12);
+    forAll(origSurface, triI)
+        newTriangles[triI] = origSurface[triI];
+
+    //- create patches
+    const label nPatches = origSurface.patches().size();
+    geometricSurfacePatchList newPatches(nPatches+6);
+    forAll(origSurface.patches(), patchI)
+        newPatches[patchI] = origSurface.patches()[patchI];
+    newPatches[nPatches].name() = "xMin";
+    newPatches[nPatches+1].name() = "xMax";
+    newPatches[nPatches+2].name() = "yMin";
+    newPatches[nPatches+3].name() = "yMax";
+    newPatches[nPatches+4].name() = "zMin";
+    newPatches[nPatches+5].name() = "zMax";
+
+    //- negative x direction
+    newTriangles[nTriangles] =
+        labelledTri(nPoints, nPoints+6, nPoints+2, nPatches);
+    newTriangles[nTriangles+1] =
+        labelledTri(nPoints, nPoints+4, nPoints+6, nPatches);
+    //- positive x direction
+    newTriangles[nTriangles+2] =
+        labelledTri(nPoints+1, nPoints+3, nPoints+7, nPatches+1);
+    newTriangles[nTriangles+3] =
+        labelledTri(nPoints+1, nPoints+7, nPoints+5, nPatches+1);
+    //- negative y direction
+    newTriangles[nTriangles+4] =
+        labelledTri(nPoints, nPoints+1, nPoints+5, nPatches+2);
+    newTriangles[nTriangles+5] =
+        labelledTri(nPoints, nPoints+5, nPoints+4, nPatches+2);
+    //- positive y direction
+    newTriangles[nTriangles+6] =
+        labelledTri(nPoints+2, nPoints+7, nPoints+3, nPatches+3);
+    newTriangles[nTriangles+7] =
+        labelledTri(nPoints+2, nPoints+6, nPoints+7, nPatches+3);
+    //- negative z direction
+    newTriangles[nTriangles+8] =
+        labelledTri(nPoints, nPoints+2, nPoints+3, nPatches+4);
+    newTriangles[nTriangles+9] =
+        labelledTri(nPoints, nPoints+3, nPoints+1, nPatches+4);
+    //- positive z direction
+    newTriangles[nTriangles+10] =
+        labelledTri(nPoints+4, nPoints+7, nPoints+6, nPatches+5);
+    newTriangles[nTriangles+11] =
+        labelledTri(nPoints+4, nPoints+5, nPoints+7, nPatches+5);
+
+    //- write the surface
+    triSurface newSurface(newTriangles, newPatches, newPoints);
+    newSurface.write(outFileName);
+
+    Info << "End\n" << endl;
+
+    return 0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/cfMesh/tetMesh/Make/files

@@ -0,0 +1,3 @@
+tetMesh.C
+
+EXE = $(FOAM_APPBIN)/tetMesh

applications/utilities/mesh/cfMesh/tetMesh/Make/options

@@ -0,0 +1,11 @@
+EXE_INC = \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/mesh/cfMesh/meshLibrary/lnInclude
+
+EXE_LIBS = \
+    -lmeshTools \
+    -ltriSurface \
+    -lfiniteVolume \
+    -lmeshLibrary

applications/utilities/mesh/cfMesh/tetMesh/tetMesh.C

@@ -0,0 +1,61 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Application
+    Generates tetrahedral mesh
+
+Description
+    - takes a triangulated surface and generates a tetrahedral mesh
+
+\*---------------------------------------------------------------------------*/
+
+#include "argList.H"
+#include "Time.H"
+#include "tetMeshGenerator.H"
+
+using namespace Foam;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// Main program:
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+
+    //- tetrahedral mesher cannot be run in parallel yet
+    argList::noParallel();
+
+    tetMeshGenerator tmg(runTime);
+
+    Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s\n"
+        << "ClockTime = " << runTime.elapsedClockTime() << endl;
+
+    tmg.writeMesh();
+
+    Info << "End\n" << endl;
+    return 0;
+}
+
+// ************************************************************************* //

src/mesh/Allwmake

@@ -6,5 +6,6 @@ set -x
 wmake $makeType autoMesh
 wmake $makeType blockMesh
 wmake $makeType extrudeModel
+wmake $makeType cfMesh/meshLibrary
 
 # ----------------------------------------------------------------- end-of-file

src/mesh/cfMesh/meshLibrary/Make/files

@@ -0,0 +1,389 @@
+
+meshSurfaceEngine  =  utilities/surfaceTools/meshSurfaceEngine
+meshSurfacePartitioner = utilities/surfaceTools/meshSurfacePartitioner
+boundaryLayers = utilities/boundaryLayers
+checkMeshDict = utilities/checkMeshDict
+
+meshSurfaceCheckInvertedVertices = utilities/surfaceTools/meshSurfaceCheckInvertedVertices
+meshSurfaceCheckEdgeTypes = utilities/surfaceTools/meshSurfaceCheckEdgeTypes
+meshSurfaceCutter  =  utilities/surfaceTools/meshSurfaceCutter
+meshSurfaceMapper  =  utilities/surfaceTools/meshSurfaceMapper
+meshSurfaceMapper2D = utilities/surfaceTools/meshSurfaceMapper2D
+edgeExtraction = utilities/surfaceTools/edgeExtraction
+edgeExtractor = $(edgeExtraction)/edgeExtractor
+meshSurfaceEdgeExtractor = utilities/surfaceTools/meshSurfaceEdgeExtractor
+meshSurfaceEdgeExtractorNonTopo = utilities/surfaceTools/meshSurfaceEdgeExtractorNonTopo
+meshSurfaceEdgeExtractor2D = utilities/surfaceTools/meshSurfaceEdgeExtractor2D
+correctEdgesBetweenPatches = utilities/surfaceTools/correctEdgesBetweenPatches
+
+decomposeCellsNearConcaveEdges = utilities/surfaceTools/decomposeCellsNearConcaveEdges
+renameBoundaryPatches = utilities/surfaceTools/renameBoundaryPatches
+
+intersectionTools = utilities/intersectionTools
+findCellsIntersectingSurface = $(intersectionTools)/findCellsIntersectingSurface
+
+meshOptimizer = utilities/smoothers/geometry/meshOptimizer
+tetMeshOptimisation = $(meshOptimizer)/tetMeshOptimisation
+simplexSmoother = $(tetMeshOptimisation)/advancedSmoothers/simplexSmoother
+knuppMetric = $(tetMeshOptimisation)/advancedSmoothers/knuppMetric
+meshUntangler = $(tetMeshOptimisation)/advancedSmoothers/meshUntangler
+quadricMetric = $(tetMeshOptimisation)/advancedSmoothers/quadricMetric
+volumeOptimizer = $(tetMeshOptimisation)/advancedSmoothers/volumeOptimizer
+
+meshSurfaceOptimizer = utilities/smoothers/geometry/meshSurfaceOptimizer
+surfaceOptimizer = $(meshSurfaceOptimizer)/advancedSurfaceSmoothers/surfaceOptimizer
+surfaceMorpherCells = utilities/surfaceTools/surfaceMorpherCells
+
+utilitiesOctrees  =  utilities/octrees
+meshOctree  =  utilities/octrees/meshOctree
+meshOctreeCube  =  utilities/octrees/meshOctree/meshOctreeCube
+meshOctreeInsideOutside = utilities/octrees/meshOctree/meshOctreeInsideOutside
+meshOctreeCreator = utilities/octrees/meshOctree/meshOctreeCreator
+meshOctreeAddressing = utilities/octrees/meshOctree/meshOctreeAddressing
+meshOctreeModifier = utilities/octrees/meshOctree/meshOctreeModifier
+meshOctreeAutoRef = utilities/octrees/meshOctree/meshOctreeAutomaticRefinement
+patchRefinement = utilities/octrees/meshOctree/refinementControls/patchRefinement
+objectRefinement = utilities/octrees/meshOctree/refinementControls/objectRefinement
+helperFunctions  =  utilities/helperFunctions
+createFacesFromChain = utilities/helperClasses/createFacesFromChain
+sortEdgesIntoChains = utilities/helperClasses/sortEdgesIntoChains
+trianglePlaneIntersections  =  utilities/helperClasses/trianglePlaneIntersections
+tetCreatorOctree = utilities/tetrahedra/tetCreatorOctree
+faceDecomposition = utilities/faceDecomposition
+decomposeCells = utilities/decomposeCells
+
+topology = utilities/smoothers/topology
+topologicalCleaner = $(topology)/topologicalCleaner
+checkBoundaryFacesSharingTwoEdges = $(topology)/checkBoundaryFacesSharingTwoEdges
+checkCellConnectionsOverFaces = $(topology)/checkCellConnectionsOverFaces
+checkIrregularSurfaceConnections = $(topology)/checkIrregularSurfaceConnections
+checkNonMappableCellConnections = $(topology)/checkNonMappableCellConnections
+
+triSurfaceTools = utilities/triSurfaceTools
+triSurfaceCleanupDuplicates = $(triSurfaceTools)/triSurfaceCleanupDuplicates
+triSurfaceCopyParts = $(triSurfaceTools)/triSurfaceCopyParts
+triSurfaceCurvatureEstimator = $(triSurfaceTools)/triSurfaceCurvatureEstimator
+triSurfacePartitioner = $(triSurfaceTools)/triSurfacePartitioner
+triSurfaceDetectFeatureEdges = $(triSurfaceTools)/triSurfaceDetectFeatureEdges
+triSurfaceClassifyEdges = $(triSurfaceTools)/triSurfaceClassifyEdges
+triSurfacePatchManipulator = $(triSurfaceTools)/triSurfacePatchManipulator
+triSurfaceRemoveFacets = $(triSurfaceTools)/triSurfaceRemoveFacets
+triSurfaceExtrude2DEdges = $(triSurfaceTools)/triSurfaceExtrude2DEdges
+triSurfaceMetaData = $(triSurfaceTools)/triSurfaceMetaData
+
+polyMeshGen = utilities/meshes/polyMeshGen
+boundaryPatch  = utilities/meshes/polyMeshGen/boundaryPatch
+polyMeshGen2DEngine = utilities/meshes/polyMeshGen2DEngine
+polyMeshGenModifier = utilities/meshes/polyMeshGenModifier
+polyMeshGenAddressing = utilities/meshes/polyMeshGenAddressing
+polyMeshGenChecks = utilities/meshes/polyMeshGenChecks
+partTetMesh = utilities/meshes/partTetMesh
+partTriMesh = utilities/meshes/partTriMesh
+primitiveMesh = utilities/meshes/primitiveMesh
+triSurf = utilities/meshes/triSurf
+cell = utilities/meshes/primitives/cell
+edge = utilities/meshes/primitives/edge
+face = utilities/meshes/primitives/face
+
+containers = utilities/containers
+VRWGraph = $(containers)/VRWGraph
+VRWGraphList = $(containers)/VRWGraphList
+graphs = $(containers)/Graphs
+lists = $(containers)/Lists
+
+meshZipper = utilities/meshZipper
+
+writeAsFPMA = utilities/dataConversion/foamToFPMA
+
+polyMeshExtractor = pMeshLibrary/polyMeshExtractor
+polyMeshGenerator = pMeshLibrary/polyMeshGenerator
+
+cartesianMeshExtractor = cartesianMesh/cartesianMeshExtractor
+cartesianMeshGenerator = cartesianMesh/cartesianMeshGenerator
+
+cartesian2DMeshGenerator = cartesian2DMesh/cartesian2DMeshGenerator
+
+tetMeshExtractor = tetMesh/tetMeshExtractor
+tetMeshExtractorOctree = tetMesh/tetMeshExtractorOctree
+tetMeshGenerator = tetMesh/tetMeshGenerator
+
+$(checkMeshDict)/checkMeshDict.C
+
+$(lists)/pointFieldPMG.C
+$(lists)/faceListPMG.C
+
+$(VRWGraph)/VRWGraph.C
+$(VRWGraph)/VRWGraphSMPModifier.C
+
+$(VRWGraphList)/VRWGraphList.C
+
+$(graphs)/cellIOGraph.C
+$(graphs)/faceIOGraph.C
+
+$(polyMeshGen)/polyMeshGen.C
+$(polyMeshGen)/polyMeshGenPoints.C
+$(polyMeshGen)/polyMeshGenFaces.C
+$(polyMeshGen)/polyMeshGenCells.C
+
+$(polyMeshGen2DEngine)/polyMeshGen2DEngine.C
+
+$(boundaryPatch)/boundaryPatchBase.C
+$(boundaryPatch)/boundaryPatch.C
+$(boundaryPatch)/processorBoundaryPatch.C
+
+$(polyMeshGenModifier)/polyMeshGenModifierRemoveUnusedVertices.C
+$(polyMeshGenModifier)/polyMeshGenModifierRemoveFaces.C
+$(polyMeshGenModifier)/polyMeshGenModifierRemoveCells.C
+$(polyMeshGenModifier)/polyMeshGenModifierReorderBoundaryFaces.C
+$(polyMeshGenModifier)/polyMeshGenModifierAddCells.C
+$(polyMeshGenModifier)/polyMeshGenModifierAddProcessorFaces.C
+$(polyMeshGenModifier)/polyMeshGenModifierAddBufferCells.C
+$(polyMeshGenModifier)/polyMeshGenModifierReplaceBoundary.C
+$(polyMeshGenModifier)/polyMeshGenModifierZipUpCells.C
+$(polyMeshGenModifier)/polyMeshGenModifierRenumberMesh.C
+$(polyMeshGenModifier)/polyMeshGenModifierAddCellByCell.C
+
+$(polyMeshGenAddressing)/polyMeshGenAddressing.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingCellCells.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingCellEdges.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingCellPoints.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingCentresAndAreas.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingCentresAndVols.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingClear.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingUpdateGeometry.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingEdgeCells.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingEdgeFaces.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingFaceEdges.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingEdges.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingPointCells.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingPointEdges.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingPointFaces.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingPointPoints.C
+$(polyMeshGenAddressing)/polyMeshGenAddressingParallelAddressing.C
+
+$(polyMeshGenChecks)/polyMeshGenChecks.C
+$(polyMeshGenChecks)/polyMeshGenChecksGeometry.C
+$(polyMeshGenChecks)/polyMeshGenChecksTopology.C
+
+$(partTetMesh)/partTetMesh.C
+$(partTetMesh)/partTetMeshAddressing.C
+$(partTetMesh)/partTetMeshParallelAddressing.C
+$(partTetMesh)/partTetMeshSimplex.C
+
+$(partTriMesh)/partTriMesh.C
+$(partTriMesh)/partTriMeshAddressing.C
+$(partTriMesh)/partTriMeshParallelAddressing.C
+$(partTriMesh)/partTriMeshSimplex.C
+
+$(triSurf)/triSurf.C
+$(triSurf)/triSurfPoints.C
+$(triSurf)/triSurfFacets.C
+$(triSurf)/triSurfFeatureEdges.C
+$(triSurf)/triSurfAddressing.C
+$(triSurf)/triSurfModifier.C
+
+$(findCellsIntersectingSurface)/findCellsIntersectingSurface.C
+
+$(tetCreatorOctree)/tetCreatorOctree.C
+$(tetCreatorOctree)/tetCreatorOctreePointsAndAddressing.C
+$(tetCreatorOctree)/tetCreatorOctreeFromFacesWithCentreNode.C
+$(tetCreatorOctree)/tetCreatorOctreeTetsAroundEdges.C
+$(tetCreatorOctree)/tetCreatorOctreeTetsAroundSplitEdges.C
+$(tetCreatorOctree)/tetCreatorOctreeTetsFromSplitFaces.C
+
+$(faceDecomposition)/faceDecomposition.C
+$(faceDecomposition)/decomposeFaces.C
+
+$(helperFunctions)/helperFunctionsStringConversion.C
+
+$(sortEdgesIntoChains)/sortEdgesIntoChains.C
+
+$(surfaceMorpherCells)/surfaceMorpherCells.C
+$(surfaceMorpherCells)/surfaceMorpherCellsMorphInternalFaces.C
+$(surfaceMorpherCells)/surfaceMorpherCellsCreateBoundaryFaces.C
+
+$(decomposeCells)/decomposeCells.C
+$(decomposeCells)/decomposeCellsPyramids.C
+$(decomposeCells)/decomposeCellsDecomposition.C
+
+$(topologicalCleaner)/topologicalCleaner.C
+$(topologicalCleaner)/topologyCleanerNonConsecutiveBoundaryVertices.C
+$(topologicalCleaner)/topologicalCleanerInvalidVertices.C
+$(topologicalCleaner)/topologyCleanerNonMappableCells.C
+$(checkCellConnectionsOverFaces)/checkCellConnectionsOverFaces.C
+$(checkIrregularSurfaceConnections)/checkIrregularSurfaceConnections.C
+$(checkIrregularSurfaceConnections)/checkIrregularSurfaceConnectionsFunctions.C
+$(checkNonMappableCellConnections)/checkNonMappableCellConnections.C
+$(checkBoundaryFacesSharingTwoEdges)/checkBoundaryFacesSharingTwoEdges.C
+
+$(boundaryLayers)/boundaryLayers.C
+$(boundaryLayers)/boundaryLayersCreateVertices.C
+$(boundaryLayers)/boundaryLayersFacesAndCells.C
+$(boundaryLayers)/boundaryLayerCells.C
+$(boundaryLayers)/boundaryLayersCheckTopologyOfBndFaces.C
+$(boundaryLayers)/boundaryLayersWrapperLayer.C
+$(boundaryLayers)/extrudeLayer.C
+$(boundaryLayers)/refineBoundaryLayers.C
+$(boundaryLayers)/refineBoundaryLayersFunctions.C
+$(boundaryLayers)/refineBoundaryLayersFaces.C
+$(boundaryLayers)/refineBoundaryLayersCells.C
+
+$(meshSurfaceEngine)/meshSurfaceEngine.C
+$(meshSurfaceEngine)/meshSurfaceEngineCalculateBoundaryNodesAndFaces.C
+$(meshSurfaceEngine)/meshSurfaceEngineParallelAddressing.C
+$(meshSurfaceEngine)/meshSurfaceEngineModifier.C
+
+$(meshSurfacePartitioner)/meshSurfacePartitioner.C
+$(meshSurfacePartitioner)/meshSurfacePartitionerFunctions.C
+
+$(meshSurfaceCheckInvertedVertices)/meshSurfaceCheckInvertedVertices.C
+
+$(meshSurfaceCheckEdgeTypes)/meshSurfaceCheckEdgeTypes.C
+
+$(meshSurfaceMapper)/meshSurfaceMapper.C
+$(meshSurfaceMapper)/meshSurfaceMapperMapVertices.C
+$(meshSurfaceMapper)/meshSurfaceMapperCornersAndEdges.C
+$(meshSurfaceMapper)/meshSurfaceMapperPremapVertices.C
+
+$(meshSurfaceMapper2D)/meshSurfaceMapper2D.C
+$(meshSurfaceMapper2D)/meshSurfaceMapper2DMapVertices.C
+$(meshSurfaceMapper2D)/meshSurfaceMapper2DPremapVertices.C
+
+$(edgeExtractor)/edgeExtractor.C
+$(edgeExtractor)/edgeExtractorCorners.C
+
+$(meshSurfaceEdgeExtractorNonTopo)/meshSurfaceEdgeExtractorNonTopo.C
+$(meshSurfaceEdgeExtractorNonTopo)/meshSurfaceEdgeExtractorNonTopoDistributeFaces.C
+
+$(meshSurfaceEdgeExtractor2D)/meshSurfaceEdgeExtractor2D.C
+$(meshSurfaceEdgeExtractor2D)/meshSurfaceEdgeExtractor2DDistributeFaces.C
+
+$(correctEdgesBetweenPatches)/correctEdgesBetweenPatches.C
+$(correctEdgesBetweenPatches)/correctEdgesBetweenPatchesDistributeFaces.C
+
+$(renameBoundaryPatches)/renameBoundaryPatches.C
+
+$(meshOptimizer)/meshOptimizer.C
+$(meshOptimizer)/meshOptimizerOptimizePoint.C
+$(meshOptimizer)/meshOptimizerOptimizePointParallel.C
+$(meshOptimizer)/meshOptimizerOptimizeSurface.C
+$(meshOptimizer)/optimizeMeshFV.C
+
+$(tetMeshOptimisation)/tetMeshOptimisation.C
+$(tetMeshOptimisation)/tetMeshOptimisationParallel.C
+
+$(simplexSmoother)/simplexSmoother.C
+
+$(knuppMetric)/knuppMetric.C
+
+$(meshUntangler)/meshUntangler.C
+$(meshUntangler)/meshUntanglerCutRegion.C
+$(meshUntangler)/meshUntanglerCutRegionPoints.C
+$(meshUntangler)/meshUntanglerCutRegionEdges.C
+$(meshUntangler)/meshUntanglerCutRegionFaces.C
+$(meshUntangler)/meshUntanglerCutRegionTieBreak.C
+
+$(quadricMetric)/quadricMetric.C
+
+$(volumeOptimizer)/volumeOptimizer.C
+$(volumeOptimizer)/volumeOptimizerEvaluateGradients.C
+
+$(meshSurfaceOptimizer)/meshSurfaceOptimizer.C
+$(meshSurfaceOptimizer)/meshSurfaceOptimizerCalculateTrianglesAndAddressing.C
+$(meshSurfaceOptimizer)/meshSurfaceOptimizerOptimizePoint.C
+$(meshSurfaceOptimizer)/meshSurfaceOptimizerOptimizeSurface.C
+$(meshSurfaceOptimizer)/meshSurfaceOptimizerOptimizePointParallel.C
+
+$(surfaceOptimizer)/surfaceOptimizer.C
+
+$(meshOctreeCube)/meshOctreeCube.C
+$(meshOctreeCube)/meshOctreeCubeIntersections.C
+$(meshOctreeCube)/meshOctreeCubeRecursiveFunctions.C
+$(meshOctreeCube)/meshOctreeCubeRefine.C
+$(meshOctreeCube)/meshOctreeCubeCoordinatesIntersections.C
+
+$(meshOctreeModifier)/meshOctreeModifier.C
+$(meshOctreeModifier)/meshOctreeModifierRefineSelectedBoxes.C
+$(meshOctreeModifier)/meshOctreeModifierEnsureCorrectRegularity.C
+$(meshOctreeModifier)/meshOctreeModifierParallelRefinement.C
+$(meshOctreeModifier)/meshOctreeModifierDistributeLeavesToProcessors.C
+$(meshOctreeModifier)/meshOctreeModifierLoadDistribution.C
+$(meshOctreeModifier)/meshOctreeModifierReduceMemoryConsumption.C
+$(meshOctreeModifier)/meshOctreeModifierUpdateCommunicationPattern.C
+
+$(meshOctreeInsideOutside)/meshOctreeInsideOutside.C
+
+$(meshOctreeCreator)/meshOctreeCreator.C
+$(meshOctreeCreator)/meshOctreeCreatorAdjustOctreeToSurface.C
+$(meshOctreeCreator)/meshOctreeCreatorCreateOctreeBoxes.C
+$(meshOctreeCreator)/meshOctreeCreatorFrontalMarking.C
+$(meshOctreeCreator)/meshOctreeCreatorLoadDistribution.C
+
+$(meshOctreeAddressing)/meshOctreeAddressing.C
+$(meshOctreeAddressing)/meshOctreeAddressingCreation.C
+$(meshOctreeAddressing)/meshOctreeAddressingGluedMesh.C
+$(meshOctreeAddressing)/meshOctreeAddressingIrregularConnections.C
+$(meshOctreeAddressing)/meshOctreeAddressingParallelAddressing.C
+
+$(meshOctreeAutoRef)/meshOctreeAutomaticRefinement.C
+$(meshOctreeAutoRef)/meshOctreeAutomaticRefinementRef.C
+
+$(meshOctree)/meshOctree.C
+$(meshOctree)/meshOctreeCubePatches.C
+$(meshOctree)/meshOctreeNeighbourSearches.C
+$(meshOctree)/meshOctreeFindNearestSurfacePoint.C
+$(meshOctree)/meshOctreeInsideCalculations.C
+$(meshOctree)/meshOctreeParallelCommunication.C
+
+$(patchRefinement)/patchRefinement.C
+$(objectRefinement)/objectRefinement.C
+$(objectRefinement)/newObjectRefinement.C
+$(objectRefinement)/sphereRefinement.C
+$(objectRefinement)/lineRefinement.C
+$(objectRefinement)/coneRefinement.C
+$(objectRefinement)/boxRefinement.C
+
+$(triSurfaceCleanupDuplicates)/triSurfaceCleanupDuplicates.C
+$(triSurfaceCleanupDuplicates)/triSurfaceCleanupDuplicatesFunctions.C
+
+$(triSurfaceCopyParts)/triSurfaceCopyParts.C
+
+$(triSurfacePartitioner)/triSurfacePartitioner.C
+$(triSurfacePartitioner)/triSurfacePartitionerCreateAddressing.C
+
+$(triSurfaceCurvatureEstimator)/triSurfaceCurvatureEstimator.C
+$(triSurfaceCurvatureEstimator)/triSurfaceCurvatureEstimatorCalculate.C
+
+$(triSurfaceDetectFeatureEdges)/triSurfaceDetectFeatureEdges.C
+$(triSurfaceDetectFeatureEdges)/triSurfaceDetectFeatureEdgesFunctions.C
+
+$(triSurfaceClassifyEdges)/triSurfaceClassifyEdges.C
+$(triSurfaceClassifyEdges)/triSurfaceClassifyEdgesFunctions.C
+
+$(triSurfacePatchManipulator)/triSurfacePatchManipulator.C
+$(triSurfacePatchManipulator)/triSurfacePatchManipulatorFunctions.C
+
+$(triSurfaceRemoveFacets)/triSurfaceRemoveFacets.C
+$(triSurfaceRemoveFacets)/triSurfaceRemoveFacetsFunctions.C
+
+$(triSurfaceExtrude2DEdges)/triSurfaceExtrude2DEdges.C
+
+$(triSurfaceMetaData)/triSurfaceMetaData.C
+
+$(cartesianMeshExtractor)/cartesianMeshExtractor.C
+$(cartesianMeshExtractor)/cartesianMeshExtractorPointsAndAddressing.C
+$(cartesianMeshExtractor)/cartesianMeshExtractorPolyMesh.C
+$(cartesianMeshExtractor)/cartesianMeshExtractorDecomposeSplitHexes.C
+
+$(cartesianMeshGenerator)/cartesianMeshGenerator.C
+
+$(cartesian2DMeshGenerator)/cartesian2DMeshGenerator.C
+
+$(tetMeshExtractorOctree)/tetMeshExtractorOctree.C
+
+$(tetMeshGenerator)/tetMeshGenerator.C
+
+$(writeAsFPMA)/writeMeshFPMA.C
+$(writeAsFPMA)/fpmaMesh.C
+
+LIB = $(FOAM_LIBBIN)/libmeshLibrary

src/mesh/cfMesh/meshLibrary/Make/options

@@ -0,0 +1,10 @@
+#if defined(__GNUC__)
+   OMP_FLAGS = -DUSE_OMP -fopenmp
+#else
+   OMP_FLAGS =
+#endif
+
+EXE_INC = \
+    $(OMP_FLAGS) \
+    -I$(LIB_SRC)/triSurface/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude

src/mesh/cfMesh/meshLibrary/cartesian2DMesh/cartesian2DMeshGenerator/cartesian2DMeshGenerator.C

@@ -0,0 +1,318 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesian2DMeshGenerator.H"
+#include "polyMeshGen2DEngine.H"
+#include "triSurf.H"
+#include "triSurfacePatchManipulator.H"
+#include "demandDrivenData.H"
+#include "Time.H"
+#include "meshOctreeCreator.H"
+#include "cartesianMeshExtractor.H"
+#include "meshSurfaceEngine.H"
+#include "meshSurfaceMapper2D.H"
+#include "meshSurfaceEdgeExtractor2D.H"
+#include "meshSurfaceOptimizer.H"
+#include "topologicalCleaner.H"
+#include "boundaryLayers.H"
+#include "refineBoundaryLayers.H"
+#include "renameBoundaryPatches.H"
+#include "checkMeshDict.H"
+#include "checkCellConnectionsOverFaces.H"
+#include "checkIrregularSurfaceConnections.H"
+#include "checkNonMappableCellConnections.H"
+#include "checkBoundaryFacesSharingTwoEdges.H"
+#include "triSurfaceMetaData.H"
+
+//#define DEBUG
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * Private member functions  * * * * * * * * * * * * //
+
+void cartesian2DMeshGenerator::createCartesianMesh()
+{
+    //- create polyMesh from octree boxes
+    cartesianMeshExtractor cme(*octreePtr_, meshDict_, mesh_);
+
+    if( meshDict_.found("decomposePolyhedraIntoTetsAndPyrs") )
+    {
+        if( readBool(meshDict_.lookup("decomposePolyhedraIntoTetsAndPyrs")) )
+            cme.decomposeSplitHexes();
+    }
+
+    cme.createMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_FAILURE);
+    # endif
+}
+
+void cartesian2DMeshGenerator::surfacePreparation()
+{
+    //- removes unnecessary cells and morph the boundary
+    //- such that there is only one boundary face per cell
+    //- It also checks topology of cells after morphing is performed
+    bool changed;
+
+    do
+    {
+        changed = false;
+
+        checkIrregularSurfaceConnections checkConnections(mesh_);
+        if( checkConnections.checkAndFixIrregularConnections() )
+            changed = true;
+
+        if( checkNonMappableCellConnections(mesh_).removeCells() )
+            changed = true;
+
+        if( checkCellConnectionsOverFaces(mesh_).checkCellGroups() )
+            changed = true;
+    } while( changed );
+
+    checkBoundaryFacesSharingTwoEdges(mesh_).improveTopology();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_FAILURE);
+    # endif
+}
+
+void cartesian2DMeshGenerator::mapMeshToSurface()
+{
+    //- calculate mesh surface
+    meshSurfaceEngine* msePtr = new meshSurfaceEngine(mesh_);
+
+    //- pre-map mesh surface
+    meshSurfaceMapper2D mapper(*msePtr, *octreePtr_);
+
+    mapper.adjustZCoordinates();
+
+    mapper.preMapVertices();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_FAILURE);
+    # endif
+
+    //- map mesh surface on the geometry surface
+    mapper.mapVerticesOntoSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+
+    deleteDemandDrivenData(msePtr);
+}
+
+void cartesian2DMeshGenerator::mapEdgesAndCorners()
+{
+    meshSurfaceEdgeExtractor2D(mesh_, *octreePtr_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void cartesian2DMeshGenerator::optimiseMeshSurface()
+{
+    meshSurfaceEngine mse(mesh_);
+    meshSurfaceOptimizer optimizer(mse, *octreePtr_);
+    optimizer.optimizeSurface2D();
+    optimizer.untangleSurface2D();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void cartesian2DMeshGenerator::generateBoundaryLayers()
+{
+    boundaryLayers bl(mesh_);
+
+    bl.activate2DMode();
+
+    bl.addLayerForAllPatches();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void cartesian2DMeshGenerator::refBoundaryLayers()
+{
+    if( meshDict_.isDict("boundaryLayers") )
+    {
+        refineBoundaryLayers refLayers(mesh_);
+
+        refineBoundaryLayers::readSettings(meshDict_, refLayers);
+
+        refLayers.activate2DMode();
+
+        refLayers.refineLayers();
+
+        meshSurfaceEngine mse(mesh_);
+        meshSurfaceOptimizer optimizer(mse, *octreePtr_);
+
+        optimizer.untangleSurface2D();
+    }
+}
+
+void cartesian2DMeshGenerator::replaceBoundaries()
+{
+    renameBoundaryPatches rbp(mesh_, meshDict_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void cartesian2DMeshGenerator::renumberMesh()
+{
+    polyMeshGenModifier(mesh_).renumberMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void cartesian2DMeshGenerator::generateMesh()
+{
+    createCartesianMesh();
+
+    surfacePreparation();
+
+    mapMeshToSurface();
+
+    mapEdgesAndCorners();
+
+    optimiseMeshSurface();
+
+    generateBoundaryLayers();
+
+    optimiseMeshSurface();
+
+    refBoundaryLayers();
+
+    renumberMesh();
+
+    replaceBoundaries();
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from objectRegistry
+cartesian2DMeshGenerator::cartesian2DMeshGenerator(const Time& time)
+:
+    db_(time),
+    surfacePtr_(NULL),
+    meshDict_
+    (
+        IOobject
+        (
+            "meshDict",
+            db_.system(),
+            db_,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    ),
+    octreePtr_(NULL),
+    mesh_(time)
+{
+    if( true )
+    {
+        checkMeshDict cmd(meshDict_);
+    }
+
+    fileName surfaceFile = meshDict_.lookup("surfaceFile");
+    if( Pstream::parRun() )
+        surfaceFile = ".."/surfaceFile;
+
+    surfacePtr_ = new triSurf(db_.path()/surfaceFile);
+
+    if( true )
+    {
+        //- save meta data with the mesh (surface mesh + its topology info)
+        triSurfaceMetaData sMetaData(*surfacePtr_);
+        const dictionary& surfMetaDict = sMetaData.metaData();
+
+        mesh_.metaData().add("surfaceFile", surfaceFile);
+        mesh_.metaData().add("surfaceMeta", surfMetaDict);
+    }
+
+    if( surfacePtr_->featureEdges().size() != 0 )
+    {
+        //- create surface patches based on the feature edges
+        //- and update the meshDict based on the given data
+        triSurfacePatchManipulator manipulator(*surfacePtr_);
+
+        const triSurf* surfaceWithPatches =
+            manipulator.surfaceWithPatches(&meshDict_);
+
+        //- delete the old surface and assign the new one
+        deleteDemandDrivenData(surfacePtr_);
+        surfacePtr_ = surfaceWithPatches;
+    }
+
+    octreePtr_ = new meshOctree(*surfacePtr_, true);
+
+    meshOctreeCreator(*octreePtr_, meshDict_).createOctreeBoxes();
+
+    generateMesh();
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+cartesian2DMeshGenerator::~cartesian2DMeshGenerator()
+{
+    deleteDemandDrivenData(surfacePtr_);
+    deleteDemandDrivenData(octreePtr_);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesian2DMeshGenerator::writeMesh() const
+{
+    mesh_.write();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesian2DMesh/cartesian2DMeshGenerator/cartesian2DMeshGenerator.H

@@ -0,0 +1,137 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    cartesian2DMeshGenerator
+
+Description
+    Creates a 2D cartesian mesh from the quadtree
+
+SourceFiles
+    cartesian2DMeshGenerator.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef cartesian2DMeshGenerator_H
+#define cartesian2DMeshGenerator_H
+
+#include "polyMeshGen.H"
+#include "IOdictionary.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// Forward declarations
+class triSurf;
+class meshOctree;
+class Time;
+
+/*---------------------------------------------------------------------------*\
+                    Class cartesian2DMeshGenerator Declaration
+\*---------------------------------------------------------------------------*/
+
+class cartesian2DMeshGenerator
+{
+    // Private data
+        //- reference to Time
+        const Time& db_;
+
+        //- pointer to the surface
+        const triSurf* surfacePtr_;
+
+        //- IOdictionary containing information about cell sizes, etc..
+        IOdictionary meshDict_;
+
+        //- pointer to the octree
+        meshOctree* octreePtr_;
+
+        //- mesh
+        polyMeshGen mesh_;
+
+    // Private member functions
+        //- create cartesian mesh
+        void createCartesianMesh();
+
+        //- prepare mesh surface
+        void surfacePreparation();
+
+        //- map mesh to the surface and untangle surface
+        void mapMeshToSurface();
+
+        //- capture edges and corners
+        void mapEdgesAndCorners();
+
+        //- optimise surface mesh
+        void optimiseMeshSurface();
+
+        //- add boundary layers
+        void generateBoundaryLayers();
+
+        //- refine boundary layers
+        void refBoundaryLayers();
+
+        //- replace boundaries
+        void replaceBoundaries();
+
+        //- renumber the mesh
+        void renumberMesh();
+
+        //- generate mesh
+        void generateMesh();
+
+        //- Disallow default bitwise copy construct
+        cartesian2DMeshGenerator(const cartesian2DMeshGenerator&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const cartesian2DMeshGenerator&);
+
+public:
+
+    // Constructors
+
+        //- Construct from time
+        cartesian2DMeshGenerator(const Time&);
+
+    // Destructor
+
+        ~cartesian2DMeshGenerator();
+
+
+    // Member Functions
+
+        //- write the mesh
+        void writeMesh() const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshExtractor/cartesianMeshExtractor.C

@@ -0,0 +1,123 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesianMeshExtractor.H"
+#include "meshOctree.H"
+
+// #define DEBUGSearch
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesianMeshExtractor::clearOut()
+{
+    deleteDemandDrivenData(leafCellLabelPtr_);
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from octree and mesh data
+cartesianMeshExtractor::cartesianMeshExtractor
+(
+    meshOctree& octree,
+    const IOdictionary& meshDict,
+    polyMeshGen& mesh
+)
+:
+    octreeCheck_(octree, meshDict, false),
+    mesh_(mesh),
+    decomposeSplitHexes_(false),
+    leafCellLabelPtr_(new labelList(octree.numberOfLeaves(), -1))
+{
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+cartesianMeshExtractor::~cartesianMeshExtractor()
+{
+    clearOut();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesianMeshExtractor::decomposeSplitHexes()
+{
+    decomposeSplitHexes_ = true;
+}
+
+void cartesianMeshExtractor::createMesh()
+{
+    Info << "Extracting polyMesh" << endl;
+    
+    //- create points and pointLeaves addressing
+    createPointsAndAddressing();
+
+    //- create the mesh
+    createPolyMesh();
+    
+    //- decompose split-hex cells into tetrahedra and pyramids
+    decomposeSplitHexesIntoTetsAndPyramids();
+    
+    //- remove unused vertices
+    polyMeshGenModifier(mesh_).removeUnusedVertices();
+    
+    Info << "Mesh has :" << nl
+        << mesh_.points().size() << " vertices " << nl
+        << mesh_.faces().size() << " faces" << nl
+        << mesh_.cells().size() << " cells" << endl;
+    
+    if( Pstream::parRun() )
+    {
+        label nCells = mesh_.cells().size();
+        reduce(nCells, sumOp<label>());
+        Info << "Total number of cells " << nCells << endl;
+    }
+    if( mesh_.cells().size() == 0 )
+    {
+        FatalErrorIn
+        (
+            "void cartesianMeshExtractor::createMesh()"
+        ) << "There are no cells in the mesh!"
+        << nl << "The reasons for this can be fwofold:"
+        << nl << "1. Inadequate mesh resolution."
+        << nl << "2. You maxCellSize is a multiplier of the domain length."
+        << " This can be reolved by reducing the maxCellSize by a fraction."
+        << "i.e. 2.49999 instead of 2.5." << exit(FatalError);
+    }
+    
+    Info << "Finished extracting polyMesh" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshExtractor/cartesianMeshExtractor.H

@@ -0,0 +1,122 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    cartesianMeshExtractor
+
+Description
+    Generates the cartesian mesh template from the octree
+
+SourceFiles
+    cartesianMeshExtractor.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef cartesianMeshExtractor_H
+#define cartesianMeshExtractor_H
+
+#include "polyMeshGenModifier.H"
+#include "meshOctreeAddressing.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    
+class IOdictionary;
+
+/*---------------------------------------------------------------------------*\
+                    Class cartesianMeshExtractor Declaration
+\*---------------------------------------------------------------------------*/
+
+class cartesianMeshExtractor
+{
+    // Private data
+        //- reference to the octree addressing
+        meshOctreeAddressing octreeCheck_;
+    
+        //- reference to the mesh
+        polyMeshGen& mesh_;
+    
+        //- decompose split hex cells
+        bool decomposeSplitHexes_;
+    
+        //- cell label for a given leaf
+        labelList* leafCellLabelPtr_;
+
+    // Private member functions
+        //- delete all freestore data
+        void clearOut();
+
+        //- create vertices and pointLeaves addressing
+        void createPointsAndAddressing();
+
+        //- create mesh data
+        void createPolyMesh();
+        
+        //- decompose split hexes into pyramids and tets
+        void decomposeSplitHexesIntoTetsAndPyramids();
+
+    // Private copy constructor
+        //- Disallow default bitwise copy construct
+        cartesianMeshExtractor(const cartesianMeshExtractor&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const cartesianMeshExtractor&);
+
+public:
+
+    // Constructors
+
+        //- Construct from octree and mesh data
+        cartesianMeshExtractor
+        (
+            meshOctree& octree,
+            const IOdictionary& meshDict,
+            polyMeshGen& mesh
+        );
+
+    // Destructor
+
+        ~cartesianMeshExtractor();
+
+
+    // Member Functions
+
+        //- decompose split hexes into standard cells
+        void decomposeSplitHexes();
+        
+        //- create the mesh with the above options
+        void createMesh();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshExtractor/cartesianMeshExtractorDecomposeSplitHexes.C

@@ -0,0 +1,110 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesianMeshExtractor.H"
+#include "demandDrivenData.H"
+#include "decomposeFaces.H"
+#include "decomposeCells.H"
+#include "hexMatcher.H"
+
+//#define DEBUGMesh
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesianMeshExtractor::decomposeSplitHexesIntoTetsAndPyramids()
+{
+    if( !decomposeSplitHexes_ ) return;
+
+    Info << "Decomposing split-hex cells" << endl;
+    
+    const faceListPMG& faces = mesh_.faces();
+    
+    //- decompose faces which have more than 4 vertices
+    boolList decompose(faces.size(), false);
+    
+    label nDecomposed(0);
+    forAll(faces, faceI)
+    {
+        if( faces[faceI].size() > 4 )
+        {
+            ++nDecomposed;
+            
+            decompose[faceI] = true;
+        }
+    }
+    
+    reduce(nDecomposed, sumOp<label>());
+    
+    Info << "Decomposing " << nDecomposed
+        << " faces with more than 4 vertices" << endl;
+    
+    if( nDecomposed != 0 )
+    {
+        //- decompose marked faces into triangles
+        decomposeFaces(mesh_).decomposeMeshFaces(decompose);
+    }
+    
+    //- decompose cells with 24 faces
+    const cellListPMG& cells = mesh_.cells();
+    decompose.setSize(cells.size());
+    decompose = false;
+    
+    hexMatcher hex;
+    forAll(cells, cellI)
+    {
+        if( !hex.matchShape(true, faces, mesh_.owner(), cellI, cells[cellI]) )
+        {
+            ++nDecomposed;
+            decompose[cellI] = true;
+        }
+    }
+    
+    reduce(nDecomposed, sumOp<label>());
+    
+    Info << "Decomposing " << nDecomposed
+        << " cells into tetrahedra and pyramids" << endl;
+    
+    if( nDecomposed )
+    {
+        //- decompose marked cells into tets and pyramids
+        decomposeCells dc(mesh_);
+        dc.decomposeMesh(decompose);
+    }
+    
+    Info << "Finished decomposing split-hex cells" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshExtractor/cartesianMeshExtractorPointsAndAddressing.C

@@ -0,0 +1,62 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesianMeshExtractor.H"
+#include "meshOctree.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Private member functions
+
+void cartesianMeshExtractor::createPointsAndAddressing()
+{
+    Info << "Creating octree vertices" << endl;
+
+    Info << "Octree nodes " << octreeCheck_.numberOfNodes() << endl;
+
+    //- set the size of the point field
+    pointFieldPMG& points = mesh_.points();
+    points.setSize(octreeCheck_.numberOfNodes());
+
+    //- store vertices into the pointField
+    const pointField& octreePoints = octreeCheck_.octreePoints();
+
+    forAll(points, pointI)
+        points[pointI] = octreePoints[pointI];
+
+    Info << "Finished creating octree vertices" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshExtractor/cartesianMeshExtractorPolyMesh.C

@@ -0,0 +1,432 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesianMeshExtractor.H"
+#include "demandDrivenData.H"
+#include "meshOctree.H"
+#include "labelledPair.H"
+
+#include "meshSurfaceEngine.H"
+#include "helperFunctions.H"
+#include "helperFunctionsPar.H"
+#include "decomposeFaces.H"
+#include "decomposeCells.H"
+
+#include <map>
+#include <sstream>
+
+//#define DEBUGMesh
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesianMeshExtractor::createPolyMesh()
+{
+    Info << "Creating polyMesh from octree" << endl;
+
+    const meshOctree& octree = octreeCheck_.octree();
+
+    //- give labels to cubes which will be used as mesh cells
+    const List<direction>& cType = octreeCheck_.boxType();
+
+    labelList& leafCellLabel = *leafCellLabelPtr_;
+    label nCells(0);
+    forAll(cType, leafI)
+    {
+        if(
+            Pstream::parRun() &&
+            (octree.returnLeaf(leafI).procNo() != Pstream::myProcNo())
+        )
+            continue;
+
+        if( cType[leafI] & meshOctreeAddressing::MESHCELL )
+        {
+            leafCellLabel[leafI] = nCells++;
+        }
+    }
+
+    //- access to mesh data
+    polyMeshGenModifier meshModifier(mesh_);
+    faceListPMG& faces = meshModifier.facesAccess();
+    cellListPMG& cells = meshModifier.cellsAccess();
+
+    //- start creating octree mesh
+    cells.setSize(nCells);
+    List<direction> nFacesInCell(nCells, direction(0));
+    label nFaces(0);
+
+    const VRWGraph& octreeFaces = octreeCheck_.octreeFaces();
+    const labelLongList& owner = octreeCheck_.octreeFaceOwner();
+    const labelLongList& neighbour = octreeCheck_.octreeFaceNeighbour();
+
+    //- map storing box label and a direction for each processor face
+    //- The map stores data in the same order on both sides of processor
+    //- boundaries. This is a consequence of Morton ordering of
+    //- leaf boxes in the octree.
+    std::map<label, labelLongList> procFaces;
+
+    forAll(octreeFaces, faceI)
+    {
+        const label own = owner[faceI];
+        const label nei = neighbour[faceI];
+
+        const label ownLabel = leafCellLabel[own];
+        label neiLabel(-1);
+        if( nei != -1 )
+            neiLabel = leafCellLabel[nei];
+
+        if( (ownLabel != -1) && (neiLabel != -1) )
+        {
+            ++nFaces;
+            ++nFacesInCell[ownLabel];
+            ++nFacesInCell[neiLabel];
+        }
+        else if( ownLabel != -1 )
+        {
+            ++nFaces;
+            ++nFacesInCell[ownLabel];
+
+            if( (nei != -1) && (cType[nei] & meshOctreeAddressing::MESHCELL) )
+            {
+                const label procNo = octree.returnLeaf(nei).procNo();
+
+                procFaces[procNo].append(faceI);
+            }
+        }
+        else if( neiLabel != -1 )
+        {
+            ++nFaces;
+            ++nFacesInCell[neiLabel];
+
+            if( (own != -1) && (cType[own] & meshOctreeAddressing::MESHCELL) )
+            {
+                const label procNo = octree.returnLeaf(own).procNo();
+
+                procFaces[procNo].append(faceI);
+            }
+        }
+    }
+
+    //- case is a serial run
+    faces.setSize(nFaces);
+    forAll(cells, cI)
+        cells[cI].setSize(nFacesInCell[cI]);
+    nFacesInCell = 0;
+
+    //- calculate faces in processor patches
+    if( Pstream::parRun() )
+    {
+        PtrList<processorBoundaryPatch>& procBoundaries =
+            meshModifier.procBoundariesAccess();
+
+        //- set the number of procBoundaries
+        procBoundaries.setSize(procFaces.size());
+        std::ostringstream ss;
+        ss << Pstream::myProcNo();
+        const word name("processor"+ss.str()+"to");
+        label nProcBoundaries(nFaces), patchI(0);
+
+        //- allocate memory for processor patches
+        std::map<label, labelLongList>::const_iterator iter;
+        for(iter=procFaces.begin();iter!=procFaces.end();++iter)
+        {
+            const label procI = iter->first;
+
+            std::ostringstream ssNei;
+            ssNei << procI;
+            procBoundaries.set
+            (
+                patchI,
+                new processorBoundaryPatch
+                (
+                    name+ssNei.str(),
+                    "processor",
+                    iter->second.size(),
+                    0,
+                    Pstream::myProcNo(),
+                    procI
+                )
+            );
+
+            nProcBoundaries -= iter->second.size();
+            ++patchI;
+        }
+
+        //- create processor faces
+        //- they need to be created here because of the correct ordering
+        patchI = 0;
+        for(iter=procFaces.begin();iter!=procFaces.end();++iter)
+        {
+            procBoundaries[patchI].patchStart() = nProcBoundaries;
+
+            const labelLongList& patchFaces = iter->second;
+
+            forAll(patchFaces, pfI)
+            {
+                const label fLabel = patchFaces[pfI];
+                const label own = owner[fLabel];
+                const label nei = neighbour[fLabel];
+
+                const label curCell = leafCellLabel[own];
+                label neiCell(-1);
+                if( nei != -1 )
+                    neiCell = leafCellLabel[nei];
+
+                //- create a processor face
+                if( neiCell == -1 )
+                {
+                    //- add a face
+                    faces[nProcBoundaries].setSize(octreeFaces[fLabel].size());
+                    forAllRow(octreeFaces, fLabel, pI)
+                        faces[nProcBoundaries][pI] = octreeFaces(fLabel, pI);
+                    cells[curCell][nFacesInCell[curCell]++] = nProcBoundaries++;
+                }
+                else if( curCell == -1 )
+                {
+                    //- add a reversed face
+                    faces[nProcBoundaries].setSize(octreeFaces[fLabel].size());
+                    label i(0);
+                    faces[nProcBoundaries][i++] = octreeFaces(fLabel, 0);
+                    for(label pI=octreeFaces.sizeOfRow(fLabel)-1;pI>0;--pI)
+                        faces[nProcBoundaries][i++] = octreeFaces(fLabel, pI);
+                    cells[neiCell][nFacesInCell[neiCell]++] = nProcBoundaries++;
+                }
+                else
+                {
+                    FatalErrorIn
+                    (
+                        "void cartesianMeshExtractor::createPolyMesh()"
+                    ) << "Face " << octreeFaces[fLabel] << " causes problems!"
+                        << abort(FatalError);
+                }
+            }
+
+            if( procBoundaries[patchI].patchSize() !=
+                (nProcBoundaries - procBoundaries[patchI].patchStart())
+            )
+                FatalErrorIn
+                (
+                    "cartesianMeshExtractor::createPolyMesh()"
+                ) << "Invalid patch size!" << Pstream::myProcNo()
+                    << abort(FatalError);
+
+            ++patchI;
+        }
+    }
+
+    nFaces = 0;
+
+    forAll(octreeFaces, faceI)
+    {
+        const label own = owner[faceI];
+        const label nei = neighbour[faceI];
+
+        const label ownLabel = leafCellLabel[own];
+        label neiLabel(-1);
+        if( nei != -1 )
+            neiLabel = leafCellLabel[nei];
+
+        if( (ownLabel != -1) && (neiLabel != -1) )
+        {
+            //- internal face
+            faces[nFaces].setSize(octreeFaces.sizeOfRow(faceI));
+            forAllRow(octreeFaces, faceI, pI)
+                faces[nFaces][pI] = octreeFaces(faceI, pI);
+
+            cells[ownLabel][nFacesInCell[ownLabel]++] = nFaces;
+            cells[neiLabel][nFacesInCell[neiLabel]++] = nFaces;
+            ++nFaces;
+        }
+        else if( ownLabel != -1 )
+        {
+            if( (nei != -1) && (cType[nei] & meshOctreeAddressing::MESHCELL) )
+            {
+                //- face at a parallel boundary
+                continue;
+            }
+
+            //- boundary face
+            faces[nFaces].setSize(octreeFaces.sizeOfRow(faceI));
+            forAllRow(octreeFaces, faceI, pI)
+                faces[nFaces][pI] = octreeFaces(faceI, pI);
+
+            cells[ownLabel][nFacesInCell[ownLabel]++] = nFaces;
+            ++nFaces;
+        }
+        else if( neiLabel != -1 )
+        {
+            if( (own != -1) && (cType[own] & meshOctreeAddressing::MESHCELL) )
+            {
+                //- face at a parallel boundary
+                continue;
+            }
+
+            //- boundary face
+            faces[nFaces].setSize(octreeFaces.sizeOfRow(faceI));
+            faces[nFaces][0] = octreeFaces(faceI, 0);
+            for(label pI=octreeFaces.sizeOfRow(faceI)-1;pI>0;--pI)
+                faces[nFaces][octreeFaces.sizeOfRow(faceI)-pI] =
+                    octreeFaces(faceI, pI);
+
+            cells[neiLabel][nFacesInCell[neiLabel]++] = nFaces;
+            ++nFaces;
+        }
+    }
+
+    # ifdef DEBUGMesh
+    label nProcBoundaries(0);
+    forAll(procBoundaries, patchI)
+        nProcBoundaries += procBoundaries[patchI].patchSize();
+
+    if( faces.size() != (nProcBoundaries + nFaces) )
+    {
+        Serr << "Number of faces " << faces.size() << endl;
+        Serr << "Number of processor boundaries " << nProcBoundaries << endl;
+        Serr << "Number of domain faces " << nFaces << endl;
+        FatalErrorIn
+        (
+            "void cartesianMeshExtractor::createPolyMesh()"
+        ) << Pstream::myProcNo() << "This mesh is invalid!"
+            << abort(FatalError);
+    }
+
+    vectorField closedness(cells.size(), vector::zero);
+    const labelList& owner = mesh_.owner();
+    const labelList& neighbour = mesh_.neighbour();
+    forAll(owner, faceI)
+        if( owner[faceI] == -1 )
+        {
+            Info << "faces " << faces << endl;
+            FatalErrorIn
+            (
+                "void cartesianMeshExtractor::createPolyMesh"
+                "("
+                "pointFieldPMG& points,"
+                "faceListPMG& faces,"
+                "cellListPMG& cells"
+                ")"
+            ) << "Face " << faceI
+                << " has no owner and neighbour!!" << abort(FatalError);
+        }
+
+    forAll(faces, faceI)
+    {
+        const vector area = faces[faceI].normal(mesh_.points());
+        closedness[owner[faceI]] += area;
+        if( neighbour[faceI] != -1 )
+            closedness[neighbour[faceI]] -= area;
+    }
+
+    forAll(closedness, cellI)
+        if( mag(closedness[cellI]) > 1e-10 )
+            Info << "Cell " << cellI << " is not closed by "
+                << closedness[cellI] << endl;
+
+    # endif
+
+    meshModifier.reorderBoundaryFaces();
+
+    if( octree.isQuadtree() )
+    {
+        //- generate empty patches
+        //- search for faces with a dominant z coordinate and store them
+        //- into an empty patch
+        meshSurfaceEngine mse(mesh_);
+        const vectorField& fNormals = mse.faceNormals();
+        const faceList::subList& bFaces = mse.boundaryFaces();
+        const labelList& fOwner = mse.faceOwners();
+        const vectorField& fCentres = mse.faceCentres();
+
+        const boundBox& bb = octree.rootBox();
+        const scalar tZ = 0.05 * (bb.max().z() - bb.min().z());
+
+        wordList patchNames(3);
+        patchNames[0] = "defaultFaces";
+        patchNames[1] = "unusedFacesBottom";
+        patchNames[2] = "unusedFacesTop";
+
+        VRWGraph boundaryFaces;
+        labelLongList newFaceOwner;
+        labelLongList newFacePatch;
+
+        forAll(fNormals, bfI)
+        {
+            //- store the face and its owner
+            boundaryFaces.appendList(bFaces[bfI]);
+            newFaceOwner.append(fOwner[bfI]);
+
+            const vector& fNormal = fNormals[bfI];
+
+            if( Foam::mag(fNormal.z()) > Foam::mag(fNormal.x() + fNormal.y()) )
+            {
+                if( Foam::mag(fCentres[bfI].z() - bb.min().z()) < tZ )
+                {
+                    newFacePatch.append(1);
+                }
+                else if( Foam::mag(fCentres[bfI].z() - bb.max().z()) < tZ )
+                {
+                    newFacePatch.append(2);
+                }
+                else
+                {
+                    FatalErrorIn
+                    (
+                        "void cartesianMeshExtractor::createPolyMesh()"
+                    ) << "Cannot distribute the face!!" << exit(FatalError);
+                }
+            }
+            else
+            {
+                newFacePatch.append(0);
+            }
+        }
+
+        //- replace the boundary with faces in correct patches
+        meshModifier.replaceBoundary
+        (
+            patchNames,
+            boundaryFaces,
+            newFaceOwner,
+            newFacePatch
+        );
+
+        meshModifier.boundariesAccess()[1].patchType() = "empty";
+        meshModifier.boundariesAccess()[2].patchType() = "empty";
+    }
+
+    Info << "Finished creating polyMesh" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshGenerator/cartesianMeshGenerator.C

@@ -0,0 +1,336 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "cartesianMeshGenerator.H"
+#include "triSurf.H"
+#include "triSurfacePatchManipulator.H"
+#include "demandDrivenData.H"
+#include "Time.H"
+#include "meshOctreeCreator.H"
+#include "cartesianMeshExtractor.H"
+#include "meshSurfaceEngine.H"
+#include "meshSurfaceMapper.H"
+#include "meshSurfaceEdgeExtractorNonTopo.H"
+#include "meshOptimizer.H"
+#include "meshSurfaceOptimizer.H"
+#include "topologicalCleaner.H"
+#include "boundaryLayers.H"
+#include "refineBoundaryLayers.H"
+#include "renameBoundaryPatches.H"
+#include "checkMeshDict.H"
+#include "checkCellConnectionsOverFaces.H"
+#include "checkIrregularSurfaceConnections.H"
+#include "checkNonMappableCellConnections.H"
+#include "checkBoundaryFacesSharingTwoEdges.H"
+#include "triSurfaceMetaData.H"
+
+//#define DEBUG
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * Private member functions  * * * * * * * * * * * * //
+
+void cartesianMeshGenerator::createCartesianMesh()
+{
+    //- create polyMesh from octree boxes
+    cartesianMeshExtractor cme(*octreePtr_, meshDict_, mesh_);
+
+    if( meshDict_.found("decomposePolyhedraIntoTetsAndPyrs") )
+    {
+        if( readBool(meshDict_.lookup("decomposePolyhedraIntoTetsAndPyrs")) )
+            cme.decomposeSplitHexes();
+    }
+
+    cme.createMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::surfacePreparation()
+{
+    //- removes unnecessary cells and morph the boundary
+    //- such that there is only one boundary face per cell
+    //- It also checks topology of cells after morphing is performed
+    bool changed;
+
+    do
+    {
+        changed = false;
+
+        checkIrregularSurfaceConnections checkConnections(mesh_);
+        if( checkConnections.checkAndFixIrregularConnections() )
+            changed = true;
+
+        if( checkNonMappableCellConnections(mesh_).removeCells() )
+            changed = true;
+
+        if( checkCellConnectionsOverFaces(mesh_).checkCellGroups() )
+            changed = true;
+    } while( changed );
+
+    checkBoundaryFacesSharingTwoEdges(mesh_).improveTopology();
+
+    # ifdef DEBUG
+    mesh_.write();
+    returnReduce(1, sumOp<label>());
+    ::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::mapMeshToSurface()
+{
+    //- calculate mesh surface
+    meshSurfaceEngine* msePtr = new meshSurfaceEngine(mesh_);
+
+    //- pre-map mesh surface
+    meshSurfaceMapper mapper(*msePtr, *octreePtr_);
+    mapper.preMapVertices();
+
+    # ifdef DEBUG
+    mesh_.write();
+    returnReduce(1, sumOp<label>());
+    //::exit(EXIT_SUCCESS);
+    # endif
+
+    //- map mesh surface on the geometry surface
+    mapper.mapVerticesOntoSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+
+    //- untangle surface faces
+    meshSurfaceOptimizer(*msePtr, *octreePtr_).untangleSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+
+    deleteDemandDrivenData(msePtr);
+}
+
+void cartesianMeshGenerator::mapEdgesAndCorners()
+{
+    meshSurfaceEdgeExtractorNonTopo(mesh_, *octreePtr_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::optimiseMeshSurface()
+{
+    meshSurfaceEngine mse(mesh_);
+    meshSurfaceOptimizer(mse, *octreePtr_).optimizeSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::generateBoundaryLayers()
+{
+    //- add boundary layers
+    boundaryLayers bl(mesh_);
+    bl.addLayerForAllPatches();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::refBoundaryLayers()
+{
+    if( meshDict_.isDict("boundaryLayers") )
+    {
+        refineBoundaryLayers refLayers(mesh_);
+
+        refineBoundaryLayers::readSettings(meshDict_, refLayers);
+
+        refLayers.refineLayers();
+
+        meshOptimizer optimizer(mesh_);
+        optimizer.untangleMeshFV();
+    }
+}
+
+void cartesianMeshGenerator::optimiseFinalMesh()
+{
+    //- untangle the surface if needed
+    meshSurfaceEngine mse(mesh_);
+    meshSurfaceOptimizer(mse, *octreePtr_).optimizeSurface();
+    deleteDemandDrivenData(octreePtr_);
+
+    //- final optimisation
+    meshOptimizer optimizer(mesh_);
+    optimizer.optimizeMeshFV();
+    optimizer.optimizeLowQualityFaces();
+    optimizer.untangleMeshFV();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::replaceBoundaries()
+{
+    renameBoundaryPatches rbp(mesh_, meshDict_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::renumberMesh()
+{
+    polyMeshGenModifier(mesh_).renumberMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(EXIT_SUCCESS);
+    # endif
+}
+
+void cartesianMeshGenerator::generateMesh()
+{
+    createCartesianMesh();
+
+    surfacePreparation();
+
+    mapMeshToSurface();
+
+    mapEdgesAndCorners();
+
+    optimiseMeshSurface();
+
+    generateBoundaryLayers();
+
+    optimiseFinalMesh();
+
+    refBoundaryLayers();
+
+    renumberMesh();
+
+    replaceBoundaries();
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from objectRegistry
+cartesianMeshGenerator::cartesianMeshGenerator(const Time& time)
+:
+    db_(time),
+    surfacePtr_(NULL),
+    meshDict_
+    (
+        IOobject
+        (
+            "meshDict",
+            db_.system(),
+            db_,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    ),
+    octreePtr_(NULL),
+    mesh_(time)
+{
+    if( true )
+    {
+        checkMeshDict cmd(meshDict_);
+    }
+
+    fileName surfaceFile = meshDict_.lookup("surfaceFile");
+    if( Pstream::parRun() )
+        surfaceFile = ".."/surfaceFile;
+
+    surfacePtr_ = new triSurf(db_.path()/surfaceFile);
+
+    if( true )
+    {
+        //- save meta data with the mesh (surface mesh + its topology info)
+        triSurfaceMetaData sMetaData(*surfacePtr_);
+        const dictionary& surfMetaDict = sMetaData.metaData();
+
+        mesh_.metaData().add("surfaceFile", surfaceFile);
+        mesh_.metaData().add("surfaceMeta", surfMetaDict);
+    }
+
+    if( surfacePtr_->featureEdges().size() != 0 )
+    {
+        //- create surface patches based on the feature edges
+        //- and update the meshDict based on the given data
+        triSurfacePatchManipulator manipulator(*surfacePtr_);
+
+        const triSurf* surfaceWithPatches =
+            manipulator.surfaceWithPatches(&meshDict_);
+
+        //- delete the old surface and assign the new one
+        deleteDemandDrivenData(surfacePtr_);
+        surfacePtr_ = surfaceWithPatches;
+    }
+
+    octreePtr_ = new meshOctree(*surfacePtr_);
+
+    meshOctreeCreator(*octreePtr_, meshDict_).createOctreeBoxes();
+
+    generateMesh();
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+cartesianMeshGenerator::~cartesianMeshGenerator()
+{
+    deleteDemandDrivenData(surfacePtr_);
+    deleteDemandDrivenData(octreePtr_);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void cartesianMeshGenerator::writeMesh() const
+{
+    mesh_.write();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/cartesianMesh/cartesianMeshGenerator/cartesianMeshGenerator.H

@@ -0,0 +1,141 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    cartesianMeshGenerator
+
+Description
+    Creates cartesian mesh from the octree
+
+SourceFiles
+    cartesianMeshGenerator.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef cartesianMeshGenerator_H
+#define cartesianMeshGenerator_H
+
+#include "polyMeshGen.H"
+#include "IOdictionary.H"
+//#include "volFields.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// Forward declarations
+class triSurf;
+class meshOctree;
+class Time;
+
+/*---------------------------------------------------------------------------*\
+                           Class cartesianMeshGenerator Declaration
+\*---------------------------------------------------------------------------*/
+
+class cartesianMeshGenerator
+{
+    // Private data
+        //- reference to Time
+        const Time& db_;
+
+        //- pointer to the surface
+        const triSurf* surfacePtr_;
+
+        //- IOdictionary containing information about cell sizes, etc..
+        IOdictionary meshDict_;
+
+        //- pointer to the octree
+        meshOctree* octreePtr_;
+
+        //- mesh
+        polyMeshGen mesh_;
+
+    // Private member functions
+        //- create cartesian mesh
+        void createCartesianMesh();
+
+        //- prepare mesh surface
+        void surfacePreparation();
+
+        //- map mesh to the surface and untangle surface
+        void mapMeshToSurface();
+
+        //- capture edges and corners
+        void mapEdgesAndCorners();
+
+        //- optimise surface mesh
+        void optimiseMeshSurface();
+
+        //- add boundary layers
+        void generateBoundaryLayers();
+
+        //- refine boundary layers
+        void refBoundaryLayers();
+
+        //- mesh optimisation
+        void optimiseFinalMesh();
+
+        //- replace boundaries
+        void replaceBoundaries();
+
+        //- renumber the mesh
+        void renumberMesh();
+
+        //- generate mesh
+        void generateMesh();
+
+        //- Disallow default bitwise copy construct
+        cartesianMeshGenerator(const cartesianMeshGenerator&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const cartesianMeshGenerator&);
+
+public:
+
+    // Constructors
+
+        //- Construct from time
+        cartesianMeshGenerator(const Time&);
+
+    // Destructor
+
+        ~cartesianMeshGenerator();
+
+
+    // Member Functions
+
+        //- write the mesh
+        void writeMesh() const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/tetMesh/tetMeshExtractorOctree/tetMeshExtractorOctree.C

@@ -0,0 +1,289 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "tetMeshExtractorOctree.H"
+#include "meshOctree.H"
+#include "triSurface.H"
+#include "polyMeshGenModifierAddCellByCell.H"
+#include "demandDrivenData.H"
+
+# ifdef USE_OMP
+#include <omp.h>
+# endif
+
+// #define DEBUGTets
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void tetMeshExtractorOctree::createPoints()
+{
+    polyMeshGenModifier meshModifier ( mesh_ );
+    pointFieldPMG& points = meshModifier.pointsAccess();
+
+    const LongList<point>& tetPoints = tetCreator_.tetPoints();
+
+    points.setSize(tetPoints.size());
+
+    # ifdef USE_OMP
+    # pragma omp parallel for
+    # endif
+    forAll(tetPoints, pointI)
+        points[pointI] = tetPoints[pointI];
+}
+
+void tetMeshExtractorOctree::createPolyMesh()
+{
+    polyMeshGenModifier meshModifier ( mesh_ );
+
+    faceListPMG& faces = meshModifier.facesAccess();
+    cellListPMG& cells = meshModifier.cellsAccess();
+    meshModifier.boundariesAccess().setSize ( 0 );
+    meshModifier.procBoundariesAccess().setSize ( 0 );
+
+    const LongList<partTet>& tets = tetCreator_.tets();
+
+    VRWGraph pTets;
+    pTets.reverseAddressing(mesh_.points().size(), tets);
+
+    //- set the number of cells
+    cells.setSize(tets.size());
+
+    //- all faces of tetrahedral cells
+    faces.setSize(4*tets.size());
+    boolList removeFace(faces.size());
+
+    # ifdef USE_OMP
+    # pragma omp parallel if( tets.size() > 1000 )
+    # endif
+    {
+        //- set face labels
+        # ifdef USE_OMP
+        # pragma omp for
+        # endif
+        forAll(removeFace, faceI)
+            removeFace[faceI] = false;
+
+        //- set sizes of cells and create all faces
+        # ifdef USE_OMP
+        # pragma omp for schedule(dynamic, 20)
+        # endif
+        forAll(tets, elmtI)
+        {
+            cells[elmtI].setSize(4);
+
+            const partTet& elmt = tets[elmtI];
+
+            //tessellationElement telmt(elmt[0], elmt[1], elmt[2], elmt[3]);
+
+            label faceI = 4 * elmtI;
+
+            //- first face
+            cells[elmtI][0] = faceI;
+
+            face& f0 = faces[faceI];
+            f0.setSize(3);
+
+            f0[0] = elmt.a();
+            f0[1] = elmt.c();
+            f0[2] = elmt.b();
+
+            ++faceI;
+
+            //- second face
+            cells[elmtI][1] = faceI;
+
+            face& f1 = faces[faceI];
+            f1.setSize(3);
+
+            f1[0] = elmt.a();
+            f1[1] = elmt.b();
+            f1[2] = elmt.d();
+
+            ++faceI;
+
+            //- third face
+            cells[elmtI][2] = faceI;
+
+            face& f2 = faces[faceI];
+            f2.setSize ( 3 );
+
+            f2[0] = elmt.b();
+            f2[1] = elmt.c();
+            f2[2] = elmt.d();
+
+            ++faceI;
+
+            //- fourth face
+            cells[elmtI][3] = faceI;
+
+            face& f3 = faces[faceI];
+            f3.setSize ( 3 );
+
+            f3[0] = elmt.c();
+            f3[1] = elmt.a();
+            f3[2] = elmt.d();
+        }
+
+        # ifdef USE_OMP
+        # pragma omp barrier
+        # endif
+
+        //- find duplicate faces
+        # ifdef USE_OMP
+        # pragma omp for schedule(dynamic, 20)
+        # endif
+        forAll(cells, cellI)
+        {
+            cell& c = cells[cellI];
+
+            forAll(c, fI)
+            {
+                const face& f = faces[c[fI]];
+                const label pointI = f[0];
+
+                forAllRow(pTets, pointI, ptI)
+                {
+                    //- do not check cells with greater labels
+                    //- they cannot be face owners
+                    if( pTets(pointI, ptI) >= cellI )
+                        continue;
+
+                    const cell& otherTet = cells[pTets(pointI, ptI)];
+
+                    //- check faces created from a tet
+                    forAll(otherTet, ofI)
+                    {
+                        //- do not compare faces with greater labels
+                        //- they shall not be removed here
+                        if( otherTet[ofI] >= c[fI] )
+                            continue;
+
+                        //- check if the faces are equal
+                        if( f == faces[otherTet[ofI]] )
+                        {
+                            removeFace[c[fI]] = true;
+                            c[fI] = otherTet[ofI];
+                        }
+                    }
+                }
+            }
+        }
+    }
+
+    //- remove duplicate faces
+    label nFaces(0);
+    labelLongList newFaceLabel(faces.size(), -1);
+
+    forAll(faces, faceI)
+    {
+        if( !removeFace[faceI] )
+        {
+            if( nFaces < faceI )
+                faces[nFaces].transfer(faces[faceI]);
+
+            newFaceLabel[faceI] = nFaces;
+            ++nFaces;
+        }
+    }
+
+    //- set the size of faces
+    faces.setSize(nFaces);
+
+    //- change cells
+    # ifdef USE_OMP
+    # pragma omp for schedule(dynamic, 40)
+    # endif
+    forAll(cells, cellI)
+    {
+        cell& c = cells[cellI];
+
+        DynList<label> newC;
+
+        forAll(c, fI)
+        {
+            if( newFaceLabel[c[fI]] != -1 )
+                newC.append(newFaceLabel[c[fI]]);
+        }
+
+        c.setSize(newC.size());
+        forAll(c, fI)
+        c[fI] = newC[fI];
+    }
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from octree and mesh data
+tetMeshExtractorOctree::tetMeshExtractorOctree
+(
+    const meshOctree& octree,
+    const IOdictionary& meshDict,
+    polyMeshGen& mesh
+)
+:
+    tetCreator_(octree, meshDict),
+    mesh_(mesh)
+{}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+tetMeshExtractorOctree::~tetMeshExtractorOctree()
+{}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void tetMeshExtractorOctree::createMesh()
+{
+    Info << "Extracting tetMesh" << endl;
+
+    //- copy tet points into the mesh
+    createPoints();
+
+    //- create the mesh
+    createPolyMesh();
+
+    polyMeshGenModifier(mesh_).reorderBoundaryFaces();
+    polyMeshGenModifier(mesh_).removeUnusedVertices();
+
+    Info << "Mesh has :" << nl
+    << mesh_.points().size() << " vertices " << nl
+    << mesh_.faces().size() << " faces" << nl
+    << mesh_.cells().size() << " cells" << endl;
+
+    Info << "Finished extracting tetMesh" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/tetMesh/tetMeshExtractorOctree/tetMeshExtractorOctree.H

@@ -0,0 +1,105 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    tetMeshExtractorOctree
+
+Description
+    A class which extracts tet mesh out of an octree structure
+
+SourceFiles
+    tetMeshExtractorOctree.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef tetMeshExtractorOctree_H
+#define tetMeshExtractorOctree_H
+
+#include "polyMeshGenModifier.H"
+#include "partTet.H"
+#include "tetCreatorOctree.H"
+#include "VRWGraph.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                    Class tetMeshExtractorOctree Declaration
+\*---------------------------------------------------------------------------*/
+
+class tetMeshExtractorOctree
+{
+    // Private data
+    //- create tets
+    tetCreatorOctree tetCreator_;
+
+    //- reference to the mesh
+    polyMeshGen& mesh_;
+
+    // Private member functions
+    //- copy tetPoints_ into mesh
+    void createPoints();
+
+    //- create mesh data
+    void createPolyMesh();
+
+    // Private copy constructor
+    //- Disallow default bitwise copy construct
+    tetMeshExtractorOctree ( const tetMeshExtractorOctree& );
+
+    //- Disallow default bitwise assignment
+    void operator= ( const tetMeshExtractorOctree& );
+
+public:
+
+    // Constructors
+
+    //- Construct from octree and mesh data
+    tetMeshExtractorOctree
+    (
+        const meshOctree& octree,
+        const IOdictionary& meshDict,
+        polyMeshGen& mesh
+    );
+
+    // Destructor
+
+    ~tetMeshExtractorOctree();
+
+
+    // Member Functions
+    void createMesh();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/tetMesh/tetMeshGenerator/tetMeshGenerator.C

@@ -0,0 +1,328 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "tetMeshGenerator.H"
+#include "triSurf.H"
+#include "demandDrivenData.H"
+#include "Time.H"
+#include "meshOctreeCreator.H"
+#include "meshOctreeAutomaticRefinement.H"
+#include "tetMeshExtractorOctree.H"
+#include "meshSurfaceEngine.H"
+#include "meshSurfaceMapper.H"
+#include "meshSurfaceEdgeExtractorNonTopo.H"
+#include "surfaceMorpherCells.H"
+#include "meshOptimizer.H"
+#include "meshSurfaceOptimizer.H"
+#include "topologicalCleaner.H"
+#include "boundaryLayers.H"
+#include "renameBoundaryPatches.H"
+#include "checkMeshDict.H"
+#include "triSurfacePatchManipulator.H"
+#include "refineBoundaryLayers.H"
+#include "triSurfaceMetaData.H"
+
+//#define DEBUG
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * Private member functions  * * * * * * * * * * * * //
+
+void tetMeshGenerator::createTetMesh()
+{
+    //- create tet Mesh from octree and Delaunay tets
+    tetMeshExtractorOctree tme(*octreePtr_, meshDict_, mesh_);
+
+    tme.createMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::surfacePreparation()
+{
+    //- removes unnecessary cells and morph the boundary
+    //- such that there is only one boundary face per cell
+    //- It also checks topology of cells after morphing is performed
+    do
+    {
+        surfaceMorpherCells* cmPtr = new surfaceMorpherCells(mesh_);
+        cmPtr->morphMesh();
+        deleteDemandDrivenData(cmPtr);
+    }
+    while( topologicalCleaner(mesh_).cleanTopology() );
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::mapMeshToSurface()
+{
+    //- calculate mesh surface
+    meshSurfaceEngine* msePtr = new meshSurfaceEngine(mesh_);
+
+    //- map mesh surface on the geometry surface
+    meshSurfaceMapper(*msePtr, *octreePtr_).mapVerticesOntoSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+
+    //- untangle surface faces
+    meshSurfaceOptimizer(*msePtr, *octreePtr_).untangleSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+
+    deleteDemandDrivenData(msePtr);
+}
+
+void tetMeshGenerator::mapEdgesAndCorners()
+{
+    meshSurfaceEdgeExtractorNonTopo(mesh_, *octreePtr_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::optimiseMeshSurface()
+{
+    meshSurfaceEngine mse(mesh_);
+    meshSurfaceOptimizer(mse, *octreePtr_).optimizeSurface();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::generateBoudaryLayers()
+{
+    if( meshDict_.found("boundaryLayers") )
+    {
+        boundaryLayers bl(mesh_);
+
+        const dictionary& bndLayers = meshDict_.subDict("boundaryLayers");
+
+        if( bndLayers.found("nLayers") )
+        {
+            const label nLayers = readLabel(bndLayers.lookup("nLayers"));
+
+            if( nLayers > 0 )
+                bl.addLayerForAllPatches();
+        }
+        else if( bndLayers.found("patchBoundaryLayers") )
+        {
+            const dictionary& patchLayers =
+                bndLayers.subDict("patchBoundaryLayers");
+            const wordList createLayers = patchLayers.toc();
+
+            forAll(createLayers, patchI)
+                bl.addLayerForPatch(createLayers[patchI]);
+        }
+    }
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::optimiseFinalMesh()
+{
+    //- final optimisation
+    meshOptimizer optimizer(mesh_);
+
+    optimizer.optimizeSurface(*octreePtr_);
+
+    deleteDemandDrivenData(octreePtr_);
+
+    optimizer.optimizeMeshFV();
+    optimizer.optimizeLowQualityFaces();
+    optimizer.optimizeMeshFV();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::refBoundaryLayers()
+{
+    if( meshDict_.isDict("boundaryLayers") )
+    {
+        refineBoundaryLayers refLayers(mesh_);
+
+        refineBoundaryLayers::readSettings(meshDict_, refLayers);
+
+        refLayers.refineLayers();
+
+        meshOptimizer optimizer(mesh_);
+
+        optimizer.untangleMeshFV();
+    }
+}
+
+void tetMeshGenerator::replaceBoundaries()
+{
+    renameBoundaryPatches rbp(mesh_, meshDict_);
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::renumberMesh()
+{
+    polyMeshGenModifier(mesh_).renumberMesh();
+
+    # ifdef DEBUG
+    mesh_.write();
+    //::exit(0);
+    # endif
+}
+
+void tetMeshGenerator::generateMesh()
+{
+    createTetMesh();
+
+    surfacePreparation();
+
+    mapMeshToSurface();
+
+    mapEdgesAndCorners();
+
+    optimiseMeshSurface();
+
+    generateBoudaryLayers();
+
+    optimiseFinalMesh();
+
+    refBoundaryLayers();
+
+    renumberMesh();
+
+    replaceBoundaries();
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from Time
+tetMeshGenerator::tetMeshGenerator(const Time& time)
+:
+    runTime_(time),
+    surfacePtr_(NULL),
+    meshDict_
+    (
+        IOobject
+        (
+            "meshDict",
+            runTime_.system(),
+            runTime_,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    ),
+    octreePtr_(NULL),
+    mesh_(time)
+{
+    if( true )
+    {
+        checkMeshDict cmd(meshDict_);
+    }
+
+    const fileName surfaceFile = meshDict_.lookup("surfaceFile");
+
+    surfacePtr_ = new triSurf(runTime_.path()/surfaceFile);
+
+    if( true )
+    {
+        //- save meta data with the mesh (surface mesh + its topology info)
+        triSurfaceMetaData sMetaData(*surfacePtr_);
+        const dictionary& surfMetaDict = sMetaData.metaData();
+
+        mesh_.metaData().add("surfaceFile", surfaceFile);
+        mesh_.metaData().add("surfaceMeta", surfMetaDict);
+    }
+
+    if( surfacePtr_->featureEdges().size() != 0 )
+    {
+        //- create surface patches based on the feature edges
+        //- and update the meshDict based on the given data
+        triSurfacePatchManipulator manipulator(*surfacePtr_);
+
+        const triSurf* surfaceWithPatches =
+            manipulator.surfaceWithPatches(&meshDict_);
+
+        //- delete the old surface and assign the new one
+        deleteDemandDrivenData(surfacePtr_);
+        surfacePtr_ = surfaceWithPatches;
+    }
+
+    octreePtr_ = new meshOctree(*surfacePtr_);
+
+    meshOctreeCreator* octreeCreatorPtr =
+        new meshOctreeCreator(*octreePtr_, meshDict_);
+    octreeCreatorPtr->createOctreeBoxes();
+    deleteDemandDrivenData(octreeCreatorPtr);
+
+    generateMesh();
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+tetMeshGenerator::~tetMeshGenerator()
+{
+    deleteDemandDrivenData(surfacePtr_);
+    deleteDemandDrivenData(octreePtr_);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void tetMeshGenerator::writeMesh() const
+{
+    mesh_.write();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/tetMesh/tetMeshGenerator/tetMeshGenerator.H

@@ -0,0 +1,141 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    tetMeshGenerator
+
+Description
+    Creates cartesian mesh from the octree
+
+SourceFiles
+    tetMeshGenerator.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef tetMeshGenerator_H
+#define tetMeshGenerator_H
+
+#include "polyMeshGen.H"
+#include "IOdictionary.H"
+//#include "volFields.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// Forward declarations
+class triSurf;
+class meshOctree;
+class Time;
+
+/*---------------------------------------------------------------------------*\
+                           Class tetMeshGenerator Declaration
+\*---------------------------------------------------------------------------*/
+
+class tetMeshGenerator
+{
+    // Private data
+        //- reference to Time
+        const Time& runTime_;
+
+        //- pointer to the surface
+        const triSurf* surfacePtr_;
+
+        //- IOdictionary containing information about cell sizes, etc..
+        IOdictionary meshDict_;
+
+        //- pointer to the octree
+        meshOctree* octreePtr_;
+
+        //- mesh
+        polyMeshGen mesh_;
+
+    // Private member functions
+        //- create cartesian mesh
+        void createTetMesh();
+
+        //- prepare mesh surface
+        void surfacePreparation();
+
+        //- map mesh to the surface and untangle surface
+        void mapMeshToSurface();
+
+        //- capture edges and corners
+        void mapEdgesAndCorners();
+
+        //- optimise surface mesh
+        void optimiseMeshSurface();
+
+        //- add boundary layers
+        void generateBoudaryLayers();
+
+        //- mesh optimisation
+        void optimiseFinalMesh();
+
+        //- refine boundary layers
+        void refBoundaryLayers();
+
+        //- replace boundaries
+        void replaceBoundaries();
+
+        //- renumber the mesh
+        void renumberMesh();
+
+        //- generate mesh
+        void generateMesh();
+
+        //- Disallow default bitwise copy construct
+        tetMeshGenerator(const tetMeshGenerator&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const tetMeshGenerator&);
+
+public:
+
+    // Constructors
+
+        //- Construct from time
+        tetMeshGenerator(const Time&);
+
+    // Destructor
+
+        ~tetMeshGenerator();
+
+
+    // Member Functions
+
+        //- write the mesh
+        void writeMesh() const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayerCells.C

@@ -0,0 +1,829 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "boundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "helperFunctions.H"
+#include "helperFunctionsPar.H"
+#include "demandDrivenData.H"
+#include "VRWGraphList.H"
+
+#include "labelledPair.H"
+#include "HashSet.H"
+
+#include <map>
+
+//#define DEBUGLayer
+
+# ifdef DEBUGLayer
+#include "polyMeshGenAddressing.H"
+# endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void boundaryLayers::createLayerCells(const labelList& patchLabels)
+{
+    Info << "Starting creating layer cells" << endl;
+
+    const meshSurfaceEngine& mse = surfaceEngine();
+    const faceList::subList& bFaces = mse.boundaryFaces();
+    const edgeList& edges = mse.edges();
+    const VRWGraph& faceEdges = mse.faceEdges();
+    const VRWGraph& edgeFaces = mse.edgeFaces();
+    const labelList& boundaryFacePatches = mse.boundaryFacePatches();
+    const labelList& faceOwners = mse.faceOwners();
+    const labelList& bp = mse.bp();
+    const VRWGraph& pointFaces = mse.pointFaces();
+
+    const meshSurfacePartitioner& mPart = surfacePartitioner();
+    const VRWGraph& pointPatches = mPart.pointPatches();
+
+    //- mark patches which will be extruded into layer cells
+    boolList treatPatches(mesh_.boundaries().size(), false);
+    forAll(patchLabels, patchI)
+    {
+        const label pLabel = patchLabels[patchI];
+        forAll(treatPatchesWithPatch_[pLabel], i)
+            treatPatches[treatPatchesWithPatch_[pLabel][i]] = true;
+    }
+
+    //- create new faces at parallel boundaries
+    const Map<label>* otherProcPatchPtr(NULL);
+    const Map<label>* otherFaceProcPtr(NULL);
+
+    if( Pstream::parRun() )
+    {
+        createNewFacesParallel(treatPatches);
+
+        otherProcPatchPtr = &mse.otherEdgeFacePatch();
+        otherFaceProcPtr = &mse.otherEdgeFaceAtProc();
+    }
+
+    //- create lists for new boundary faces
+    VRWGraph newBoundaryFaces;
+    labelLongList newBoundaryOwners;
+    labelLongList newBoundaryPatches;
+
+    //- create storage for new cells
+    VRWGraphList cellsToAdd;
+
+    //- create layer cells and store boundary faces
+    const label nOldCells = mesh_.cells().size();
+    forAll(bFaces, bfI)
+    {
+        if( treatPatches[boundaryFacePatches[bfI]] )
+        {
+            const face& f = bFaces[bfI];
+            const label pKey = patchKey_[boundaryFacePatches[bfI]];
+
+            DynList<DynList<label> > cellFaces;
+
+            DynList<label> newF;
+
+            //- store the current boundary face
+            newF.clear();
+            newF.append(f[0]);
+            for(label pI=f.size()-1;pI>0;--pI)
+                newF.append(f[pI]);
+            cellFaces.append(newF);
+
+            //- create parallel face
+            forAll(f, pI)
+                newF[pI] = findNewNodeLabel(f[pI], pKey);
+
+            cellFaces.append(newF);
+
+            newBoundaryFaces.appendList(newF);
+            newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+            newBoundaryPatches.append(boundaryFacePatches[bfI]);
+
+            //- create quad faces
+            newF.setSize(4);
+            forAll(f, pI)
+            {
+                newF[0] = f[pI];
+                newF[1] = f.nextLabel(pI);
+                newF[2] = findNewNodeLabel(newF[1], pKey);
+                newF[3] = findNewNodeLabel(f[pI], pKey);
+
+                cellFaces.append(newF);
+
+                //- check if the face is at the boundary
+                //- of the treated partitions
+                const label edgeI = faceEdges(bfI, pI);
+                if( edgeFaces.sizeOfRow(edgeI) == 2 )
+                {
+                    label neiFace = edgeFaces(edgeI, 0);
+                    if( neiFace == bfI )
+                        neiFace = edgeFaces(edgeI, 1);
+
+                    if( !treatPatches[boundaryFacePatches[neiFace]] )
+                    {
+                        newBoundaryFaces.appendList(newF);
+                        newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+                        newBoundaryPatches.append(boundaryFacePatches[neiFace]);
+                    }
+                }
+                else if( edgeFaces.sizeOfRow(edgeI) == 1 )
+                {
+                    const Map<label>& otherProcPatch = *otherProcPatchPtr;
+                    if( !treatPatches[otherProcPatch[edgeI]] )
+                    {
+                        //- face is a new boundary face
+                        newBoundaryFaces.appendList(newF);
+                        newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+                        newBoundaryPatches.append(otherProcPatch[edgeI]);
+                    }
+                }
+            }
+
+            # ifdef DEBUGLayer
+            Info << "Adding cell " << cellFaces << endl;
+            # endif
+
+            cellsToAdd.appendGraph(cellFaces);
+        }
+        else
+        {
+            # ifdef DEBUGLayer
+            Info << "Storing original boundary face "
+                << bfI << " into patch " << boundaryFacePatches[bfI] << endl;
+            # endif
+
+            newBoundaryFaces.appendList(bFaces[bfI]);
+            newBoundaryOwners.append(faceOwners[bfI]);
+            newBoundaryPatches.append(boundaryFacePatches[bfI]);
+        }
+    }
+
+    //- data for parallel execution
+    boolList procPoint;
+    LongList<DynList<label, 4> > pointProcFaces;
+    LongList<labelPair> faceAtPatches;
+    if( Pstream::parRun() )
+    {
+        procPoint.setSize(nPoints_);
+        procPoint = false;
+
+        const Map<label>& globalToLocal = mse.globalToLocalBndPointAddressing();
+        const labelList& bPoints = mse.boundaryPoints();
+
+        for
+        (
+            Map<label>::const_iterator iter=globalToLocal.begin();
+            iter!=globalToLocal.end();
+            ++iter
+        )
+        {
+            const label bpI = iter();
+            procPoint[bPoints[bpI]] = true;
+        }
+    }
+
+    //- create cells at edges
+    forAll(edgeFaces, edgeI)
+    {
+        //- do not consider edges with no faces attached to it
+        if( edgeFaces.sizeOfRow(edgeI) == 0 )
+            continue;
+
+        //- cells are generated at the processor with the lowest label
+        if(
+            (edgeFaces.sizeOfRow(edgeI) == 1) &&
+            (otherFaceProcPtr->operator[](edgeI) < Pstream::myProcNo())
+        )
+            continue;
+
+        //- check if the edge is a feature edge
+        const label patchI = boundaryFacePatches[edgeFaces(edgeI, 0)];
+
+        label patchJ;
+        if( otherProcPatchPtr && otherProcPatchPtr->found(edgeI) )
+        {
+            patchJ = otherProcPatchPtr->operator[](edgeI);
+        }
+        else
+        {
+            patchJ = boundaryFacePatches[edgeFaces(edgeI, 1)];
+        }
+
+        if( patchI == patchJ )
+            continue;
+
+        //- check if the faces attached to the edge have different keys
+        const label pKeyI = patchKey_[patchI];
+        const label pKeyJ = patchKey_[patchJ];
+
+        if( pKeyI == pKeyJ )
+            continue;
+
+        const edge& e = edges[edgeI];
+        if( otherVrts_.find(e.start()) == otherVrts_.end() )
+            continue;
+        if( otherVrts_.find(e.end()) == otherVrts_.end() )
+            continue;
+
+        //- generate faces of the bnd layer cell
+        FixedList<FixedList<label, 4>, 6> cellFaces;
+        createNewCellFromEdge(e, pKeyI, pKeyJ, cellFaces);
+
+        //- store boundary faces
+        newBoundaryFaces.appendList(cellFaces[1]);
+        newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+        newBoundaryPatches.append(patchJ);
+
+        newBoundaryFaces.appendList(cellFaces[3]);
+        newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+        newBoundaryPatches.append(patchI);
+
+        //- check if face 5 is a boundary face or at an inter-processor boundary
+        const label bps = bp[e.start()];
+        label unusedPatch(-1);
+        forAllRow(pointPatches, bps, i)
+        {
+            const label ptchI = pointPatches(bps, i);
+
+            if( ptchI == patchI )
+                continue;
+            if( ptchI == patchJ )
+                continue;
+            if( unusedPatch != -1 )
+            {
+                unusedPatch = -1;
+                break;
+            }
+
+            unusedPatch = ptchI;
+        }
+
+        if( unusedPatch != -1 && treatedPatch_[unusedPatch] )
+        {
+            //- add a face in the empty patch in case of 2D layer generation
+            newBoundaryFaces.appendList(cellFaces[5]);
+            newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+            newBoundaryPatches.append(unusedPatch);
+        }
+        else if( Pstream::parRun() && procPoint[e.start()] )
+        {
+            //- add a face at inter-pocessor boundary
+            pointProcFaces.append(cellFaces[5]);
+            faceAtPatches.append(labelPair(patchI, patchJ));
+        }
+
+        //- check if face 4 is a boundary face or at an inter-processor boundary
+        const label bpe = bp[e.end()];
+        unusedPatch = -1;
+        forAllRow(pointPatches, bpe, i)
+        {
+            const label ptchI = pointPatches(bpe, i);
+
+            if( ptchI == patchI )
+                continue;
+            if( ptchI == patchJ )
+                continue;
+            if( unusedPatch != -1 )
+            {
+                unusedPatch = -1;
+                break;
+            }
+
+            unusedPatch = ptchI;
+        }
+
+        if( unusedPatch != -1 && treatedPatch_[unusedPatch] )
+        {
+            //- add a face in the empty patch in case of 2D layer generation
+            newBoundaryFaces.appendList(cellFaces[4]);
+            newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+            newBoundaryPatches.append(unusedPatch);
+        }
+        else if( Pstream::parRun() && procPoint[e.end()] )
+        {
+            //- add a face at inter-pocessor boundary
+            pointProcFaces.append(cellFaces[4]);
+            faceAtPatches.append(labelPair(patchI, patchJ));
+        }
+
+        //- append cell to the queue
+        cellsToAdd.appendGraph(cellFaces);
+    }
+
+    //- create cells for corner nodes
+    typedef std::map<std::pair<label, label>, label> mPairToLabelType;
+    typedef std::map<label, mPairToLabelType> mPointsType;
+    typedef std::map<label, DynList<label, 3> > ppType;
+
+    ppType nodePatches;
+    labelHashSet parPoint;
+
+    if( Pstream::parRun() )
+    {
+        const labelList& bPoints = mse.boundaryPoints();
+        const VRWGraph& pProcs = mse.bpAtProcs();
+        const labelList& globalPointLabel = mse.globalBoundaryPointLabel();
+        const Map<label>& globalToLocal = mse.globalToLocalBndPointAddressing();
+
+        std::map<label, labelLongList> facesToSend;
+
+        typedef std::map<label, DynList<DynList<label, 8>, 8> > ppfType;
+
+        ppfType parPointFaces;
+        ppType parPointPatches;
+
+        forAllConstIter(mPointsType, otherVrts_, iter)
+        {
+            //- skip points on feature edges
+            if( iter->second.size() == 2 )
+                continue;
+
+            const label bpI = bp[iter->first];
+
+            if( pProcs.sizeOfRow(bpI) != 0 )
+            {
+                parPoint.insert(iter->first);
+
+                //- point is at a parallel boundary
+                label pMin = pProcs(bpI, 0);
+                forAllRow(pProcs, bpI, i)
+                {
+                    const label prI = pProcs(bpI, i);
+
+                    if( facesToSend.find(prI) == facesToSend.end() )
+                        facesToSend.insert
+                        (
+                            std::make_pair(prI, labelLongList())
+                        );
+
+                    if( prI < pMin )
+                        pMin = prI;
+                }
+
+                if( Pstream::myProcNo() == pMin )
+                {
+                    DynList<label, 3>& pPatches = parPointPatches[bpI];
+                    pPatches.setSize(pointFaces.sizeOfRow(bpI));
+
+                    DynList<DynList<label, 8>, 8>& pFaces = parPointFaces[bpI];
+                    pFaces.setSize(pPatches.size());
+
+                    forAllRow(pointFaces, bpI, pfI)
+                    {
+                        const label bfI = pointFaces(bpI, pfI);
+                        const face& bf = bFaces[bfI];
+
+                        pPatches[pfI] = boundaryFacePatches[bfI];
+
+                        DynList<label, 8>& bfCopy = pFaces[pfI];
+                        bfCopy.setSize(bf.size());
+                        forAll(bf, pI)
+                            bfCopy[pI] = globalPointLabel[bp[bf[pI]]];
+                    }
+
+                    continue;
+                }
+
+                labelLongList& stp = facesToSend[pMin];
+
+                //- send the data to the processor with the lowest label
+                //- data is flatenned as follows
+                //- 1. the number of faces and global point label
+                //- 2. number of points in the face
+                //- 3. patch label
+                //- 4. global labels of face points
+                stp.append(globalPointLabel[bpI]);
+                stp.append(pointFaces.sizeOfRow(bpI));
+                forAllRow(pointFaces, bpI, pfI)
+                {
+                    const label bfI = pointFaces(bpI, pfI);
+                    const face& bf = bFaces[bfI];
+
+                    stp.append(bf.size());
+                    stp.append(boundaryFacePatches[bfI]);
+                    forAll(bf, pI)
+                        stp.append(globalPointLabel[bp[bf[pI]]]);
+                }
+            }
+        }
+
+        //- exchange data with other processors
+        labelLongList receivedData;
+        help::exchangeMap(facesToSend, receivedData);
+
+        label counter(0);
+        while( counter < receivedData.size() )
+        {
+            const label bpI = globalToLocal[receivedData[counter++]];
+            const label nFaces = receivedData[counter++];
+            for(label fI=0;fI<nFaces;++fI)
+            {
+                DynList<label, 8> f(receivedData[counter++]);
+                parPointPatches[bpI].append(receivedData[counter++]);
+                forAll(f, pI)
+                    f[pI] = receivedData[counter++];
+                parPointFaces[bpI].append(f);
+            }
+        }
+
+        //- sort faces sharing corners at the parallel boundaries
+        forAllIter(ppfType, parPointFaces, iter)
+        {
+            DynList<DynList<label, 8>, 8>& pFaces = iter->second;
+            DynList<label, 3>& fPatches = parPointPatches[iter->first];
+            const label gpI = globalPointLabel[iter->first];
+
+            for(label i=0;i<pFaces.size();++i)
+            {
+                const DynList<label, 8>& bf = pFaces[i];
+                const label pos = bf.containsAtPosition(gpI);
+                const edge e(bf[pos], bf[bf.fcIndex(pos)]);
+
+                for(label j=i+1;j<pFaces.size();++j)
+                {
+                    const DynList<label, 8>& obf = pFaces[j];
+                    if( obf.contains(e.start()) && obf.contains(e.end()) )
+                    {
+                        DynList<label, 8> add;
+                        add = pFaces[i+1];
+                        pFaces[i+1] = pFaces[j];
+                        pFaces[j] = add;
+
+                        const label pAdd = fPatches[i+1];
+                        fPatches[i+1] = fPatches[j];
+                        fPatches[j] = pAdd;
+                        break;
+                    }
+                }
+            }
+
+            DynList<label, 3> patchIDs;
+            forAll(fPatches, fpI)
+                patchIDs.appendIfNotIn(fPatches[fpI]);
+
+            nodePatches.insert(std::make_pair(bPoints[iter->first], patchIDs));
+        }
+    }
+
+    //- sort out point which are not at inter-processor boundaries
+    forAllConstIter(mPointsType, otherVrts_, iter)
+    {
+        if( iter->second.size() == 2 )
+            continue;
+
+        if( parPoint.found(iter->first) )
+            continue;
+
+        const label bpI = bp[iter->first];
+
+        //- ensure correct orientation
+        DynList<label> pFaces(pointFaces.sizeOfRow(bpI));
+        forAll(pFaces, fI)
+            pFaces[fI] = pointFaces(bpI, fI);
+
+        for(label i=0;i<pFaces.size();++i)
+        {
+            const face& bf = bFaces[pFaces[i]];
+            const edge e = bf.faceEdge(bf.which(iter->first));
+
+            for(label j=i+1;j<pFaces.size();++j)
+            {
+                const face& obf = bFaces[pFaces[j]];
+                if(
+                    (obf.which(e.start()) >= 0) &&
+                    (obf.which(e.end()) >= 0)
+                )
+                {
+                    const label add = pFaces[i+1];
+                    pFaces[i+1] = pFaces[j];
+                    pFaces[j] = add;
+                    break;
+                }
+            }
+        }
+
+        DynList<label, 3> patchIDs;
+        forAll(pFaces, patchI)
+        {
+            patchIDs.appendIfNotIn(boundaryFacePatches[pFaces[patchI]]);
+        }
+
+        nodePatches.insert(std::make_pair(iter->first, patchIDs));
+    }
+
+    //- create layer cells for corner nodes
+    forAllIter(ppType, nodePatches, iter)
+    {
+        const DynList<label, 3>& patchIDs = iter->second;
+        DynList<label, 3> pKeys;
+        forAll(patchIDs, patchI)
+        {
+            const label pKey = patchKey_[patchIDs[patchI]];
+
+            if( pKey < 0 )
+                continue;
+
+            pKeys.appendIfNotIn(pKey);
+        }
+
+        if( pKeys.size() != 3 )
+            continue;
+
+        # ifdef DEBUGLayer
+        Pout << "Creating corner cell at point " << iter->first << endl;
+        # endif
+
+        FixedList<FixedList<label, 4>, 6> cellFaces;
+        createNewCellFromNode(iter->first, pKeys, cellFaces);
+
+        //- store boundary faces
+        newBoundaryFaces.appendList(cellFaces[1]);
+        newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+        newBoundaryPatches.append(patchIDs[0]);
+
+        newBoundaryFaces.appendList(cellFaces[3]);
+        newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+        newBoundaryPatches.append(patchIDs[1]);
+
+        newBoundaryFaces.appendList(cellFaces[5]);
+        newBoundaryOwners.append(nOldCells+cellsToAdd.size());
+        newBoundaryPatches.append(patchIDs[2]);
+
+        if( Pstream::parRun() )
+        {
+            if( procPoint[iter->first] )
+            {
+                pointProcFaces.append(cellFaces[0]);
+                faceAtPatches.append(labelPair(patchIDs[1], patchIDs[2]));
+
+                pointProcFaces.append(cellFaces[2]);
+                faceAtPatches.append(labelPair(patchIDs[0], patchIDs[2]));
+
+                pointProcFaces.append(cellFaces[4]);
+                faceAtPatches.append(labelPair(patchIDs[0], patchIDs[1]));
+            }
+        }
+
+        # ifdef DEBUGLayer
+        Info << "Adding corner cell " << cellFaces << endl;
+        # endif
+
+        //- append cell to the queue
+        cellsToAdd.appendGraph(cellFaces);
+    }
+
+    if( Pstream::parRun() )
+    {
+        //- create faces at parallel boundaries created from
+        //- points at parallel boundaries
+        createNewFacesFromPointsParallel
+        (
+            pointProcFaces,
+            faceAtPatches
+        );
+    }
+
+    //- create mesh modifier
+    polyMeshGenModifier meshModifier(mesh_);
+
+    meshModifier.addCells(cellsToAdd);
+
+    cellsToAdd.clear();
+    meshModifier.reorderBoundaryFaces();
+    meshModifier.replaceBoundary
+    (
+        patchNames_,
+        newBoundaryFaces,
+        newBoundaryOwners,
+        newBoundaryPatches
+    );
+
+    //- delete meshSurfaceEngine
+    this->clearOut();
+
+    # ifdef DEBUGLayer
+    mesh_.addressingData().checkMesh(true);
+    # endif
+
+    Info << "Finished creating layer cells" << endl;
+}
+
+void boundaryLayers::createNewFacesFromPointsParallel
+(
+    const LongList<DynList<label, 4> >& faceCandidates,
+    const LongList<labelPair>& candidatePatches
+)
+{
+    const meshSurfaceEngine& mse = this->surfaceEngine();
+    const labelList& bPoints = mse.boundaryPoints();
+    const labelList& bp = mse.bp();
+    const VRWGraph& bpAtProcs = mse.bpAtProcs();
+    const labelList& globalPointLabel = mse.globalBoundaryPointLabel();
+    const Map<label>& globalToLocal = mse.globalToLocalBndPointAddressing();
+
+    labelList otherFaceProc(faceCandidates.size(), -1);
+    //- some faces may appear more than once
+    //- such faces are ordinary internal faces
+    VRWGraph pointFaceCandidates(nPoints_);
+    forAll(faceCandidates, fI)
+    {
+        forAll(faceCandidates[fI], pI)
+            pointFaceCandidates.append(faceCandidates[fI][pI], fI);
+    }
+
+    boolList duplicateFace(faceCandidates.size(), false);
+    List<labelledPair> pointOfOrigin(faceCandidates.size());
+    std::map<labelledPair, label> pointOfOriginToFaceLabel;
+    forAll(faceCandidates, fI)
+    {
+        const DynList<label, 4>& f = faceCandidates[fI];
+
+        const label pointI = f[0];
+
+        const labelledPair lp
+        (
+            globalPointLabel[bp[pointI]],
+            Pair<label>
+            (
+                patchKey_[candidatePatches[fI][0]],
+                patchKey_[candidatePatches[fI][1]]
+            )
+        );
+
+        if(
+            pointOfOriginToFaceLabel.find(lp) != pointOfOriginToFaceLabel.end()
+        )
+        {
+            duplicateFace[fI] = true;
+            pointOfOrigin[fI] = lp;
+            duplicateFace[pointOfOriginToFaceLabel[lp]] = true;
+            continue;
+        }
+
+        pointOfOrigin[fI] = lp;
+
+        pointOfOriginToFaceLabel.insert(std::make_pair(lp, fI));
+    }
+
+    //- find the processor patch for each processor boundary face
+    //- the key of the algorithm is the point from which the face was created
+    //- by sending the point label and the associated patches, it will be
+    //- possible to find the other processor containing that face
+    std::map<label, LongList<labelledPair> > exchangeData;
+    const DynList<label>& neiProcs = mse.bpNeiProcs();
+    forAll(neiProcs, procI)
+    {
+        const label neiProcI = neiProcs[procI];
+
+        if( neiProcI == Pstream::myProcNo() )
+            continue;
+
+        if( exchangeData.find(neiProcI) == exchangeData.end() )
+            exchangeData.insert
+            (
+                std::make_pair(neiProcI, LongList<labelledPair>())
+            );
+    }
+
+    forAll(faceCandidates, fI)
+    {
+        if( duplicateFace[fI] )
+            continue;
+
+        const label bpI = bp[faceCandidates[fI][0]];
+
+        forAllRow(bpAtProcs, bpI, procI)
+        {
+            const label neiProcNo = bpAtProcs(bpI, procI);
+            if( neiProcNo == Pstream::myProcNo() )
+                continue;
+
+            LongList<labelledPair>& dataToSend = exchangeData[neiProcNo];
+            dataToSend.append(pointOfOrigin[fI]);
+        }
+    }
+
+    //- exchange the data with other processors
+    std::map<label, List<labelledPair> > receivedMap;
+    help::exchangeMap(exchangeData, receivedMap);
+    exchangeData.clear();
+
+    for
+    (
+        std::map<label, List<labelledPair> >::const_iterator
+        iter=receivedMap.begin();
+        iter!=receivedMap.end();
+        ++iter
+    )
+    {
+        const List<labelledPair>& receivedData = iter->second;
+
+        forAll(receivedData, i)
+        {
+            const labelledPair& lpp = receivedData[i];
+            const label gpI = lpp.pairLabel();
+            const label pointI = bPoints[globalToLocal[gpI]];
+            const labelPair& lp = lpp.pair();
+
+            forAllRow(pointFaceCandidates, pointI, i)
+            {
+                const label fI = pointFaceCandidates(pointI, i);
+                const DynList<label, 4>& f = faceCandidates[fI];
+
+                const labelPair pk
+                (
+                    patchKey_[candidatePatches[fI][0]],
+                    patchKey_[candidatePatches[fI][1]]
+                );
+
+                const labelPair rpk
+                (
+                    patchKey_[candidatePatches[fI][1]],
+                    patchKey_[candidatePatches[fI][0]]
+                );
+
+                if(
+                    (f[0] == pointI) && ((pk == lp) || (rpk == lp))
+                )
+                {
+                    //- found the processor containing other face
+                    otherFaceProc[pointOfOriginToFaceLabel[lpp]] = iter->first;
+                }
+            }
+        }
+    }
+    receivedMap.clear();
+
+    //- sort the points in ascending order
+    //- this ensures the correct order of faces at the processor boundaries
+    sort(pointOfOrigin);
+
+    Map<label> otherProcToProcPatch;
+    forAll(mesh_.procBoundaries(), patchI)
+    {
+        const processorBoundaryPatch& wp = mesh_.procBoundaries()[patchI];
+        otherProcToProcPatch.insert(wp.neiProcNo(), patchI);
+    }
+
+    //- store processor faces
+    VRWGraph newProcFaces;
+    labelLongList newProc;
+
+    forAll(pointOfOrigin, i)
+    {
+        const label fI = pointOfOriginToFaceLabel[pointOfOrigin[i]];
+
+        if( duplicateFace[fI] || (otherFaceProc[fI] == -1) )
+            continue;
+
+        if( !otherProcToProcPatch.found(otherFaceProc[fI]) )
+        {
+            otherProcToProcPatch.insert
+            (
+                otherFaceProc[fI],
+                polyMeshGenModifier(mesh_).addProcessorPatch
+                (
+                    otherFaceProc[fI]
+                )
+            );
+        }
+
+        newProcFaces.appendList(faceCandidates[fI]);
+        newProc.append(otherProcToProcPatch[otherFaceProc[fI]]);
+    }
+
+    polyMeshGenModifier(mesh_).addProcessorFaces(newProcFaces, newProc);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayers.C

@@ -0,0 +1,645 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "boundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "demandDrivenData.H"
+#include "helperFunctions.H"
+#include "helperFunctionsPar.H"
+#include "meshSurfaceCheckInvertedVertices.H"
+#include "meshSurfacePartitioner.H"
+#include "polyMeshGen2DEngine.H"
+
+#include "labelledPoint.H"
+#include <map>
+#include <set>
+
+# ifdef USE_OMP
+#include <omp.h>
+# endif
+
+//#define DEBUGLayer
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+const meshSurfaceEngine& boundaryLayers::surfaceEngine() const
+{
+    if( !msePtr_ )
+        msePtr_ = new meshSurfaceEngine(mesh_);
+
+    return *msePtr_;
+}
+
+const meshSurfacePartitioner& boundaryLayers::surfacePartitioner() const
+{
+    if( !meshPartitionerPtr_ )
+        meshPartitionerPtr_ = new meshSurfacePartitioner(surfaceEngine());
+
+    return *meshPartitionerPtr_;
+}
+
+void boundaryLayers::findPatchesToBeTreatedTogether()
+{
+    if( geometryAnalysed_ )
+        return;
+
+    forAll(treatPatchesWithPatch_, patchI)
+        treatPatchesWithPatch_[patchI].append(patchI);
+
+    const meshSurfaceEngine& mse = surfaceEngine();
+
+    const pointFieldPMG& points = mesh_.points();
+    const faceList::subList& bFaces = mse.boundaryFaces();
+    const edgeList& edges = mse.edges();
+    const VRWGraph& eFaces = mse.edgeFaces();
+    const labelList& boundaryFacePatches = mse.boundaryFacePatches();
+
+    const meshSurfacePartitioner& mPart = surfacePartitioner();
+    const VRWGraph& pPatches = mPart.pointPatches();
+
+    //- patches must be treated together if there exist a corner where
+    //- more than three patches meet
+    const labelHashSet& corners = mPart.corners();
+    forAllConstIter(labelHashSet, corners, it)
+    {
+        const label bpI = it.key();
+
+        if( mPart.numberOfFeatureEdgesAtPoint(bpI) != 3 )
+        {
+            labelHashSet commonPatches;
+            DynList<label> allPatches;
+
+            forAllRow(pPatches, bpI, patchI)
+            {
+                const DynList<label>& tpwp =
+                    treatPatchesWithPatch_[pPatches(bpI, patchI)];
+
+                forAll(tpwp, pJ)
+                {
+                    if( commonPatches.found(tpwp[pJ]) )
+                        continue;
+
+                    commonPatches.insert(tpwp[pJ]);
+                    allPatches.append(tpwp[pJ]);
+                }
+            }
+
+            forAllRow(pPatches, bpI, patchI)
+                treatPatchesWithPatch_[pPatches(bpI, patchI)] = allPatches;
+
+            # ifdef DEBUGLayer
+            Info << "Corner " << bpI << " is shared by patches "
+                << pPatches[bpI] << endl;
+            Info << "All patches " << allPatches << endl;
+            # endif
+        }
+    }
+
+    //- patches must be treated together for concave geometries
+    //- edgeClassification map counts the number of convex and concave edges
+    //- for a given patch. The first counts convex edges and the second counts
+    //- concave ones. If the number of concave edges is of the considerable
+    //- percentage, it is treated as O-topology
+    meshSurfaceCheckInvertedVertices vertexCheck(mse);
+    const labelHashSet& invertedVertices = vertexCheck.invertedVertices();
+
+    std::map<std::pair<label, label>, Pair<label> > edgeClassification;
+    labelLongList procEdges;
+    forAll(eFaces, eI)
+    {
+        if( eFaces.sizeOfRow(eI) != 2 )
+        {
+            procEdges.append(eI);
+            continue;
+        }
+
+        //- check if the any of the face vertices is tangled
+        const edge& e = edges[eI];
+        if( invertedVertices.found(e[0]) || invertedVertices.found(e[1]) )
+            continue;
+
+        const label patch0 = boundaryFacePatches[eFaces(eI, 0)];
+        const label patch1 = boundaryFacePatches[eFaces(eI, 1)];
+        if( patch0 != patch1 )
+        {
+            std::pair<label, label> pp
+            (
+                Foam::min(patch0, patch1),
+                Foam::max(patch0, patch1)
+            );
+            if( edgeClassification.find(pp) == edgeClassification.end() )
+                edgeClassification.insert
+                (
+                    std::make_pair(pp, Pair<label>(0, 0))
+                );
+
+            const face& f1 = bFaces[eFaces(eI, 0)];
+            const face& f2 = bFaces[eFaces(eI, 1)];
+            if( !help::isSharedEdgeConvex(points, f1, f2) )
+            {
+                ++edgeClassification[pp].second();
+            }
+            else
+            {
+                ++edgeClassification[pp].first();
+            }
+        }
+    }
+
+    if( Pstream::parRun() )
+    {
+        //- check faces over processor edges
+        const labelList& globalEdgeLabel = mse.globalBoundaryEdgeLabel();
+        const VRWGraph& beAtProcs = mse.beAtProcs();
+        const Map<label>& globalToLocal = mse.globalToLocalBndEdgeAddressing();
+
+        const DynList<label>& neiProcs = mse.beNeiProcs();
+        const Map<label>& otherProcPatches = mse.otherEdgeFacePatch();
+        const Map<label>& otherFaceProc = mse.otherEdgeFaceAtProc();
+
+        //- send faces sharing processor edges to other processors
+        //- faces are flattened into a single contiguous array
+        const labelList& bp = mse.bp();
+        const labelList& globalPointLabel = mse.globalBoundaryPointLabel();
+        const Map<label>& globalPointToLocal =
+            mse.globalToLocalBndPointAddressing();
+
+        std::map<label, LongList<labelledPoint> > exchangePoints;
+        forAll(neiProcs, procI)
+        {
+            exchangePoints.insert
+            (
+                std::make_pair(neiProcs[procI], LongList<labelledPoint>())
+            );
+        }
+
+        //- store faces for sending
+        forAll(procEdges, eI)
+        {
+            const label beI = procEdges[eI];
+            if( eFaces.sizeOfRow(beI) == 0 )
+                continue;
+
+            const edge& e = edges[beI];
+            if( invertedVertices.found(e[0]) || invertedVertices.found(e[1]) )
+                continue;
+
+            //- do not send data if the face on other processor
+            //- is in the same patch
+            if( otherProcPatches[beI] == boundaryFacePatches[eFaces(beI, 0)] )
+                continue;
+
+            const face& f = bFaces[eFaces(beI, 0)];
+
+            forAllRow(beAtProcs, beI, procI)
+            {
+                const label neiProc = beAtProcs(beI, procI);
+                if( neiProc == Pstream::myProcNo() )
+                    continue;
+
+                //- each face is sent as follows
+                //- 1. global edge label
+                //- 2. number of face nodes
+                //- 3. faces nodes and vertex coordinates
+                LongList<labelledPoint>& dps = exchangePoints[neiProc];
+                dps.append(labelledPoint(globalEdgeLabel[beI], point()));
+                dps.append(labelledPoint(f.size(), point()));
+                forAll(f, pI)
+                {
+                    dps.append
+                    (
+                        labelledPoint
+                        (
+                            globalPointLabel[bp[f[pI]]],
+                            points[f[pI]]
+                        )
+                    );
+                }
+            }
+        }
+
+        LongList<labelledPoint> receivedData;
+        help::exchangeMap(exchangePoints, receivedData);
+
+        //- receive faces from other processors
+        Map<label> transferredPointToLocal;
+
+        label counter(0);
+        while( counter < receivedData.size() )
+        {
+            const label beI =
+                globalToLocal[receivedData[counter++].pointLabel()];
+            face f(receivedData[counter++].pointLabel());
+            forAll(f, pI)
+            {
+                const labelledPoint& lp = receivedData[counter++];
+                if( globalPointToLocal.found(lp.pointLabel()) )
+                {
+                    //- this point already exist on this processor
+                    f[pI] = globalPointToLocal[lp.pointLabel()];
+                }
+                else
+                {
+                    //- this point does not exist on this processor
+                    //- add it to the local list of points
+                    //- it will be deleted when this procedure is finished
+                    if( !transferredPointToLocal.found(lp.pointLabel()) )
+                    {
+                        //- this point has not yet been received
+                        transferredPointToLocal.insert
+                        (
+                            lp.pointLabel(),
+                            points.size()
+                        );
+                        mesh_.points().append(lp.coordinates());
+                    }
+
+                    f[pI] = transferredPointToLocal[lp.pointLabel()];
+                }
+            }
+
+            const label patch0 = boundaryFacePatches[eFaces(beI, 0)];
+            const label patch1 = otherProcPatches[beI];
+
+            std::pair<label, label> pp
+            (
+                Foam::min(patch0, patch1),
+                Foam::max(patch0, patch1)
+            );
+            if( edgeClassification.find(pp) == edgeClassification.end() )
+                edgeClassification.insert
+                (
+                    std::make_pair(pp, Pair<label>(0, 0))
+                );
+
+            if(
+                (otherFaceProc[beI] > Pstream::myProcNo()) &&
+                !help::isSharedEdgeConvex(points, bFaces[eFaces(beI, 0)], f)
+            )
+            {
+                ++edgeClassification[pp].second();
+            }
+            else if( otherFaceProc[beI] > Pstream::myProcNo() )
+            {
+                ++edgeClassification[pp].first();
+            }
+        }
+
+        //- set the size of points back to their original number
+        mesh_.points().setSize(nPoints_);
+    }
+
+    std::map<std::pair<label, label>, Pair<label> >::const_iterator it;
+    for(it=edgeClassification.begin();it!=edgeClassification.end();++it)
+    {
+        const std::pair<label, label>& edgePair = it->first;
+        const Pair<label>& nConvexAndConcave = it->second;
+
+        if( nConvexAndConcave.second() != 0 )
+        {
+            //- number of concave edges is greater than the number
+            //- of the convex ones. Treat patches together.
+            const label patch0 = edgePair.first;
+            const label patch1 = edgePair.second;
+
+            //- avoid adding unused patches in case of 2D meshing
+            if( treatedPatch_[patch0] || treatedPatch_[patch1] )
+                continue;
+
+            treatPatchesWithPatch_[patch0].append(patch1);
+            treatPatchesWithPatch_[patch1].append(patch0);
+        }
+    }
+
+    if( Pstream::parRun() )
+    {
+        //- make sure that all processors have the same graph
+        labelLongList flattenedPatches;
+        forAll(treatPatchesWithPatch_, patchI)
+        {
+            if( treatPatchesWithPatch_[patchI].size() <= 1 )
+                continue;
+
+            flattenedPatches.append(patchI);
+            flattenedPatches.append(treatPatchesWithPatch_[patchI].size());
+            forAll(treatPatchesWithPatch_[patchI], itemI)
+                flattenedPatches.append(treatPatchesWithPatch_[patchI][itemI]);
+        }
+
+        labelListList procPatches(Pstream::nProcs());
+        procPatches[Pstream::myProcNo()].setSize(flattenedPatches.size());
+        forAll(flattenedPatches, i)
+            procPatches[Pstream::myProcNo()][i] = flattenedPatches[i];
+        Pstream::gatherList(procPatches);
+        Pstream::scatterList(procPatches);
+
+        forAll(procPatches, procI)
+        {
+            if( procI == Pstream::myProcNo() )
+            continue;
+
+            const labelList& cPatches = procPatches[procI];
+            label counter(0);
+
+            while( counter < cPatches.size() )
+            {
+                const label patchI = cPatches[counter++];
+                const label size = cPatches[counter++];
+                for(label i=0;i<size;++i)
+                    treatPatchesWithPatch_[patchI].appendIfNotIn
+                    (
+                        cPatches[counter++]
+                    );
+            }
+        }
+    }
+
+    //- final adjusting of patches which shall be treated together
+    boolList confirmed(treatPatchesWithPatch_.size(), false);
+    forAll(treatPatchesWithPatch_, patchI)
+    {
+        if( treatPatchesWithPatch_[patchI].size() <= 1 )
+        {
+            confirmed[patchI] = true;
+            continue;
+        }
+
+        if( confirmed[patchI] )
+            continue;
+
+        std::set<label> commonPatches;
+        commonPatches.insert(patchI);
+
+        DynList<label> front;
+        front.append(patchI);
+        confirmed[patchI] = true;
+
+        while( front.size() )
+        {
+            const label fPatch = front.removeLastElement();
+
+            forAll(treatPatchesWithPatch_[fPatch], i)
+            {
+                const label patchJ = treatPatchesWithPatch_[fPatch][i];
+
+                if( confirmed[patchJ] )
+                    continue;
+
+                front.append(patchJ);
+                confirmed[patchJ] = true;
+                commonPatches.insert(patchJ);
+                forAll(treatPatchesWithPatch_[patchJ], j)
+                    commonPatches.insert(treatPatchesWithPatch_[patchJ][j]);
+            }
+        }
+
+        forAllConstIter(std::set<label>, commonPatches, it)
+        {
+            const label patchJ = *it;
+
+            treatPatchesWithPatch_[patchJ].clear();
+            forAllConstIter(std::set<label>, commonPatches, iter)
+                treatPatchesWithPatch_[patchJ].append(*iter);
+        }
+    }
+
+    # ifdef DEBUGLayer
+    for(it=edgeClassification.begin();it!=edgeClassification.end();++it)
+    {
+        const std::pair<label, label>& edgePair = it->first;
+        const Pair<label>& nConvexAndConcave = it->second;
+        Info << "Pair of patches " << edgePair.first << " "
+            << edgePair.second << " is " << nConvexAndConcave << endl;
+    }
+
+    Info << "Patch names " << patchNames_ << endl;
+    Info << "Treat patches with patch " << treatPatchesWithPatch_ << endl;
+    # endif
+
+    geometryAnalysed_ = true;
+}
+
+void boundaryLayers::addLayerForPatch(const label patchLabel)
+{
+    if( treatedPatch_[patchLabel] )
+        return;
+
+    const PtrList<boundaryPatch>& boundaries = mesh_.boundaries();
+
+    if( returnReduce(boundaries[patchLabel].patchSize(), sumOp<label>()) == 0 )
+        return;
+
+    boolList treatPatches(boundaries.size(), false);
+    if( patchWiseLayers_ )
+    {
+        forAll(treatPatchesWithPatch_[patchLabel], pI)
+            treatPatches[treatPatchesWithPatch_[patchLabel][pI]] = true;
+    }
+    else
+    {
+        forAll(treatedPatch_, patchI)
+            if( !treatedPatch_[patchI] )
+                treatPatches[patchI] = true;
+    }
+
+    newLabelForVertex_.setSize(nPoints_);
+    newLabelForVertex_ = -1;
+    otherVrts_.clear();
+    patchKey_.clear();
+
+    createNewVertices(treatPatches);
+
+    createNewFacesAndCells(treatPatches);
+
+    forAll(treatPatches, patchI)
+        if( treatPatches[patchI] )
+            treatedPatch_[patchI] = true;
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+// Construct from mesh reference
+boundaryLayers::boundaryLayers
+(
+    polyMeshGen& mesh
+)
+:
+    mesh_(mesh),
+    msePtr_(NULL),
+    meshPartitionerPtr_(NULL),
+    patchWiseLayers_(true),
+    terminateLayersAtConcaveEdges_(false),
+    patchNames_(),
+    treatedPatch_(),
+    treatPatchesWithPatch_(),
+    newLabelForVertex_(),
+    otherVrts_(),
+    patchKey_(),
+    nPoints_(mesh.points().size()),
+    geometryAnalysed_(false)
+{
+    const PtrList<boundaryPatch>& boundaries = mesh_.boundaries();
+    patchNames_.setSize(boundaries.size());
+    forAll(boundaries, patchI)
+        patchNames_[patchI] = boundaries[patchI].patchName();
+
+    treatedPatch_.setSize(boundaries.size());
+    treatedPatch_ = false;
+
+    treatPatchesWithPatch_.setSize(boundaries.size());
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+boundaryLayers::~boundaryLayers()
+{
+    clearOut();
+
+    if( Pstream::parRun() )
+        polyMeshGenModifier(mesh_).removeUnusedVertices();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void boundaryLayers::addLayerForPatch(const word& patchName)
+{
+    if( !geometryAnalysed_ )
+        findPatchesToBeTreatedTogether();
+
+    const PtrList<boundaryPatch>& boundaries = mesh_.boundaries();
+
+    forAll(boundaries, patchI)
+        if( boundaries[patchI].patchName() == patchName )
+            addLayerForPatch(patchI);
+}
+
+void boundaryLayers::createOTopologyLayers()
+{
+    patchWiseLayers_ = false;
+}
+
+void boundaryLayers::terminateLayersAtConcaveEdges()
+{
+    terminateLayersAtConcaveEdges_ = true;
+}
+
+void boundaryLayers::activate2DMode()
+{
+    polyMeshGen2DEngine mesh2DEngine(mesh_);
+    const boolList& zMinPoint = mesh2DEngine.zMinPoints();
+    const boolList& zMaxPoint = mesh2DEngine.zMaxPoints();
+
+    const faceList::subList& bFaces = surfaceEngine().boundaryFaces();
+    const labelList& facePatch = surfaceEngine().boundaryFacePatches();
+
+    boolList allZMax(mesh_.boundaries().size(), true);
+    boolList allZMin(mesh_.boundaries().size(), true);
+
+    # ifdef USE_OMP
+    # pragma omp parallel for schedule(dynamic, 50)
+    # endif
+    forAll(bFaces, bfI)
+    {
+        const face& bf = bFaces[bfI];
+
+        forAll(bf, pI)
+        {
+            if( !zMinPoint[bf[pI]] )
+                allZMin[facePatch[bfI]] = false;
+            if( !zMaxPoint[bf[pI]] )
+                allZMax[facePatch[bfI]] = false;
+        }
+    }
+
+    //- mark empty patches as already used
+    forAll(allZMin, patchI)
+    {
+        if( allZMin[patchI] ^ allZMax[patchI] )
+        {
+            treatedPatch_[patchI] = true;
+        }
+    }
+
+    forAll(treatPatchesWithPatch_, patchI)
+    {
+        DynList<label>& patches = treatPatchesWithPatch_[patchI];
+
+        for(label i=patches.size()-1;i>=0;--i)
+            if( treatedPatch_[patches[i]] )
+                patches.removeElement(i);
+    }
+}
+
+void boundaryLayers::addLayerForAllPatches()
+{
+    if( !geometryAnalysed_ )
+        findPatchesToBeTreatedTogether();
+
+    const PtrList<boundaryPatch>& boundaries = mesh_.boundaries();
+
+    if( !patchWiseLayers_ )
+    {
+        forAll(boundaries, patchI)
+            addLayerForPatch(patchI);
+    }
+    else
+    {
+        newLabelForVertex_.setSize(nPoints_);
+        newLabelForVertex_ = -1;
+        otherVrts_.clear();
+        patchKey_.clear();
+
+        //- avoid generating bnd layer at empty patches in case of 2D meshing
+        label counter(0);
+        forAll(treatedPatch_, patchI)
+            if( !treatedPatch_[patchI] )
+                ++counter;
+
+        labelList treatedPatches(counter);
+        counter = 0;
+        forAll(treatedPatch_, i)
+            if( !treatedPatch_[i] )
+                treatedPatches[counter++] = i;
+
+        //- create bnd layer vertices
+        createNewVertices(treatedPatches);
+
+        //- create bnd layer cells
+        createLayerCells(treatedPatches);
+    }
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayers.H

@@ -0,0 +1,287 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    boundaryLayers
+
+Description
+    Creates boundary layers
+
+SourceFiles
+    boundaryLayers.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef boundaryLayers_H
+#define boundaryLayers_H
+
+#include "polyMeshGenModifier.H"
+#include "meshSurfaceEngine.H"
+#include "meshSurfacePartitioner.H"
+#include "DynList.H"
+#include "labelLongList.H"
+#include "Map.H"
+#include "labelPair.H"
+
+#include <map>
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// Forward declarations
+class meshSurfaceEngine;
+class meshSurfacePartitioner;
+
+/*---------------------------------------------------------------------------*\
+                           Class boundaryLayers Declaration
+\*---------------------------------------------------------------------------*/
+
+class boundaryLayers
+{
+        //- Reference to the mesh
+        polyMeshGen& mesh_;
+
+        //- pointer to mesh surface engine
+        mutable meshSurfaceEngine* msePtr_;
+
+        //- poiner to meshSurfacePartitioner
+        mutable meshSurfacePartitioner* meshPartitionerPtr_;
+
+        //- shall I create patch-wise layers (true)
+        //- O-topology layer (false)
+        bool patchWiseLayers_;
+
+        //- shall the layers be terminated at concave edges (true)
+        bool terminateLayersAtConcaveEdges_;
+
+        //- patch names
+        wordList patchNames_;
+
+        //- helper which contains information if a boundary layer
+        //- has already been extruded for a given patch
+        boolList treatedPatch_;
+
+        //- extrude patches with patch
+        List<DynList<label> > treatPatchesWithPatch_;
+
+        //- label of a new node (helper)
+        labelLongList newLabelForVertex_;
+
+        //- map storing labels of new vertices created at node
+        //- and corner vertices
+        std::map<label, std::map<std::pair<label, label>, label> > otherVrts_;
+
+        //- a key assigned to each patch. It is needed to search in otherVrts_
+        labelList patchKey_;
+
+        //- number of vertices in the mesh
+        label nPoints_;
+
+        //- has the geometry been analysed
+        bool geometryAnalysed_;
+
+    // Private member functions
+        //- Return const reference to meshSurfaceEngine
+        const meshSurfaceEngine& surfaceEngine() const;
+
+        //- return const reference to meshSurfacePartitioner
+        const meshSurfacePartitioner& surfacePartitioner() const;
+
+        //- find if any other patches need to be treated together
+        //- with the given one
+        void findPatchesToBeTreatedTogether();
+
+        //- find vertices of the selected patches
+        void findPatchVertices
+        (
+            const boolList& treatPatches,
+            List<direction>& patchVertex
+        ) const;
+
+        //- check and correct the topology of boundary faces where
+        //- the layers terminate
+        void checkTopologyOfBoundaryFaces(const labelList& patchLabels);
+
+        //- create new vertex
+        point createNewVertex
+        (
+            const label bpI,
+            const boolList& treatPatches,
+            const List<direction>& pVertices
+        ) const;
+
+        //- create new vertices for the selected patches
+        void createNewVertices
+        (
+            const boolList& treatPatches
+        );
+
+        //- create new vertices such that layers for selected patches
+        //- are generated in a single run
+        void createNewVertices
+        (
+            const labelList& patchLabels
+        );
+
+        //- creates new vertices for vertices at parallel boundaries
+        void createNewPartitionVerticesParallel
+        (
+            const labelLongList& procPoints,
+            const List<direction>& pVertices,
+            const boolList& treatPatches
+        );
+
+        //- creates new vertices from vertices at parallel boundaries
+        //- which are also at the border of the treated partitions
+        void createNewEdgeVerticesParallel
+        (
+            const labelLongList& procPoints,
+            const List<direction>& pVertices,
+            const boolList& treatPatches
+        );
+
+        //- create a layer of cells
+        void createNewFacesAndCells
+        (
+            const boolList& treatPatches
+        );
+
+        //- create new faces at parallel boundaries
+        //- faces are extruded from edges
+        void createNewFacesParallel
+        (
+            const boolList& treatPatches
+        );
+
+        //- create new faces at parallel boundaries
+        //- faces are created from points at parallel boundaries
+        //- the function takes a reference to the faces which are the candidates
+        //- to create faces at parallel boundaries
+        void createNewFacesFromPointsParallel
+        (
+            const LongList<DynList<label, 4> >& faceCandidates,
+            const LongList<labelPair>& candidatePatches
+        );
+
+        //- create layer cells in one go
+        //- this is much faster than layer by layer
+        void createLayerCells(const labelList& patchLabels);
+
+        //- helper function finding a new face label for multiply extruded nodes
+        inline label findNewNodeLabel
+        (
+            const label pointI,
+            const label pKey
+        ) const;
+
+        //- creating hex cells near feature edges
+        inline void createNewCellFromEdge
+        (
+            const edge& e,
+            const label pKeyI,
+            const label pKeyJ,
+            FixedList<FixedList<label, 4>, 6>& cellFaces
+        ) const;
+
+        //- creating hex cells near corners
+        inline void createNewCellFromNode
+        (
+            const label pointI,
+            const DynList<label, 3>& pKeys,
+            FixedList<FixedList<label, 4>, 6>& cellFaces
+        ) const;
+
+        //- create a bnd layer for a given patch
+        void addLayerForPatch(const label patchLabel);
+
+        //- delete meshSurfaceEngine
+        inline void clearOut()
+        {
+            deleteDemandDrivenData(msePtr_);
+            deleteDemandDrivenData(meshPartitionerPtr_);
+        }
+
+    // Enumerators
+        enum vertexTypes
+        {
+            NONE = 0,
+            PATCHNODE = 1,
+            EDGENODE = 2,
+            CORNERNODE = 4,
+            PARALLELBOUNDARY = 8
+        };
+
+        //- Disallow bitwise copy construct
+        boundaryLayers(const boundaryLayers&);
+
+        //- Disallow bitwise assignment
+        void operator=(const boundaryLayers&);
+
+public:
+
+    // Constructors
+
+        //- Construct from mesh reference
+        boundaryLayers(polyMeshGen& mesh);
+
+    // Destructor
+        ~boundaryLayers();
+
+    // Public member functions
+        //- adds layer for a given patch
+        void addLayerForPatch(const word& patchName);
+
+        //- create O-topology layers (used as flag)
+        void createOTopologyLayers();
+
+        //- terminate boundary layers at concave edges (used as a flag)
+        void terminateLayersAtConcaveEdges();
+
+        //- avoid generating layers for empty patches in case of a 2D mesh
+        //- used as a flag prior to addLayerForAllPatches
+        void activate2DMode();
+
+        //- add layers for all patches
+        void addLayerForAllPatches();
+
+        //- add wrapper layer
+        //- this function is intended for usage before surface recovery
+        void addWrapperLayer();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "boundaryLayersI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayersCheckTopologyOfBndFaces.C

@@ -0,0 +1,274 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "boundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "decomposeCells.H"
+#include "helperFunctions.H"
+#include "HashSet.H"
+
+#include <set>
+
+//#define DEBUGLayer
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void boundaryLayers::checkTopologyOfBoundaryFaces(const labelList& patchLabels)
+{
+    if( !patchWiseLayers_ )
+        return;
+    
+    Info << "Checking topology of boundary faces" << endl;
+    
+    labelHashSet usedPatches;
+    forAll(patchLabels, i)
+        usedPatches.insert(patchLabels[i]);
+    
+    //- create a set of patch pairs. These are pairs at which the layers
+    //- shall be terminated
+    std::set<std::pair<label, label> > terminatedPairs;
+    forAll(treatPatchesWithPatch_, patchI)
+    {
+        const DynList<label>& otherPatches = treatPatchesWithPatch_[patchI];
+        
+        forAll(otherPatches, patchJ)
+        {
+            if( patchI == otherPatches[patchJ] )
+                continue;
+            
+            terminatedPairs.insert
+            (
+                std::make_pair
+                (
+                    Foam::min(patchI, otherPatches[patchJ]),
+                    Foam::max(patchI, otherPatches[patchJ])
+                )
+            );
+        }
+    }
+    
+    bool changed;
+    label nDecomposed(0);
+    boolList decomposeCell(mesh_.cells().size(), false);
+    
+    do
+    {
+        changed = false;
+        
+        const meshSurfaceEngine& mse = this->surfaceEngine();
+        const faceList::subList& bFaces = mse.boundaryFaces();
+        const labelList& faceOwner = mse.faceOwners();
+        const labelList& facePatches = mse.boundaryFacePatches();
+        const VRWGraph& faceEdges = mse.faceEdges();
+        const VRWGraph& edgeFaces = mse.edgeFaces();
+        
+        const Map<label>& otherProcPatch = mse.otherEdgeFacePatch();
+        
+        VRWGraph newBoundaryFaces;
+        labelLongList newBoundaryOwners;
+        labelLongList newBoundaryPatches;
+        
+        forAll(bFaces, bfI)
+        {
+            const face& bf = bFaces[bfI];
+            const label fPatch = facePatches[bfI];
+            
+            if( !usedPatches.found(fPatch) )
+                continue;
+            
+            //- find patches of neighbour faces
+            labelList neiPatches(bf.size());
+            forAll(bf, eI)
+            {
+                const label beI = faceEdges(bfI, eI);
+                
+                if( edgeFaces.sizeOfRow(beI) == 2 )
+                {
+                    label neiFace = edgeFaces(beI, 0);
+                    if( neiFace == bfI )
+                        neiFace = edgeFaces(beI, 1);
+                    
+                    neiPatches[eI] = facePatches[neiFace];
+                }
+                else if( edgeFaces.sizeOfRow(beI) == 1 )
+                {
+                    //- edge is at a parallel boundary
+                    neiPatches[eI] = otherProcPatch[beI];
+                }
+            }
+            
+            //- find feature edges and check if the patches meeting there
+            //- shall be treated together.
+            bool storedFace(false);
+            forAll(neiPatches, eI)
+            {
+                if( neiPatches[eI] == fPatch )
+                    continue;
+                
+                std::pair<label, label> pp
+                (
+                    Foam::min(fPatch, neiPatches[eI]),
+                    Foam::max(fPatch, neiPatches[eI])
+                );
+                
+                if( terminatedPairs.find(pp) == terminatedPairs.end() )
+                    continue;
+                
+                //- create a new face from this edge and the neighbouring edges
+                bool usePrev(false), useNext(false);
+                if( neiPatches[neiPatches.rcIndex(eI)] == fPatch )
+                {
+                    usePrev = true;
+                }
+                else
+                {
+                    std::pair<label, label> ppPrev
+                    (
+                        Foam::min(fPatch, neiPatches[neiPatches.rcIndex(eI)]),
+                        Foam::max(fPatch, neiPatches[neiPatches.rcIndex(eI)])
+                    );
+                    
+                    if( terminatedPairs.find(ppPrev) == terminatedPairs.end() )
+                        usePrev = true;
+                }
+                
+                if( neiPatches[neiPatches.fcIndex(eI)] == fPatch )
+                {
+                    useNext = true;
+                }
+                else
+                {
+                    std::pair<label, label> ppNext
+                    (
+                        Foam::min(fPatch, neiPatches[neiPatches.fcIndex(eI)]),
+                        Foam::max(fPatch, neiPatches[neiPatches.fcIndex(eI)])
+                    );
+                    
+                    if( terminatedPairs.find(ppNext) == terminatedPairs.end() )
+                        useNext = true;
+                }
+                
+                DynList<edge> removeEdges;
+                if( useNext && usePrev )
+                {
+                    removeEdges.setSize(3);
+                    removeEdges[0] = bf.faceEdge(neiPatches.rcIndex(eI));
+                    removeEdges[1] = bf.faceEdge(eI);
+                    removeEdges[2] = bf.faceEdge(neiPatches.fcIndex(eI));
+                }
+                else if( useNext )
+                {
+                    removeEdges.setSize(2);
+                    removeEdges[0] = bf.faceEdge(neiPatches.fcIndex(eI));
+                    removeEdges[1] = bf.faceEdge(eI);
+                }
+                else if( usePrev )
+                {
+                    removeEdges.setSize(2);
+                    removeEdges[0] = bf.faceEdge(neiPatches.rcIndex(eI));
+                    removeEdges[1] = bf.faceEdge(eI);
+                }
+                
+                const face cutFace = help::removeEdgesFromFace(bf, removeEdges);
+                if( cutFace.size() > 2 )
+                {
+                    newBoundaryFaces.appendList(cutFace);
+                    newBoundaryOwners.append(faceOwner[bfI]);
+                    newBoundaryPatches.append(fPatch);
+                }
+                const face rFace = help::createFaceFromRemovedPart(bf, cutFace);
+                if( rFace.size() > 2 )
+                {
+                    newBoundaryFaces.appendList(rFace);
+                    newBoundaryOwners.append(faceOwner[bfI]);
+                    newBoundaryPatches.append(fPatch);
+                }
+                
+                if( (cutFace.size() > 2) && (rFace.size() > 2) )
+                {
+                    decomposeCell[faceOwner[bfI]] = true;
+                    changed = true;
+                    ++nDecomposed;
+                }
+                
+                storedFace = true;
+                
+                break;
+            }
+            
+            if( !storedFace )
+            {
+                newBoundaryFaces.appendList(bf);
+                newBoundaryOwners.append(faceOwner[bfI]);
+                newBoundaryPatches.append(fPatch);
+            }
+        }
+        
+        //- Finally, replace the boundary faces
+        reduce(changed, maxOp<bool>());
+        
+        if( changed )
+        {
+            polyMeshGenModifier(mesh_).replaceBoundary
+            (
+                patchNames_,
+                newBoundaryFaces,
+                newBoundaryOwners,
+                newBoundaryPatches
+            );
+            
+            clearOut();
+        }
+        
+    } while( changed );
+    
+    //- decompose owner cells adjacent to the decomposed faces
+    reduce(nDecomposed, sumOp<label>());
+    
+    if( nDecomposed != 0 )
+    {
+        FatalError << "Critical. Not tested" << exit(FatalError);
+        decomposeCells dc(mesh_);
+        dc.decomposeMesh(decomposeCell);
+        
+        clearOut();
+    }
+    
+    mesh_.write();
+    Info << "Finished checking topology" << endl;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayersFacesAndCells.C

@@ -0,0 +1,328 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "boundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "helperFunctions.H"
+#include "demandDrivenData.H"
+#include "VRWGraphList.H"
+
+#include <map>
+
+//#define DEBUGLayer
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void boundaryLayers::createNewFacesAndCells(const boolList& treatPatches)
+{
+    Info << "Starting creating layer cells" << endl;
+
+    const meshSurfaceEngine& mse = surfaceEngine();
+    const faceList::subList& bFaces = mse.boundaryFaces();
+    const VRWGraph& faceEdges = mse.faceEdges();
+    const VRWGraph& edgeFaces = mse.edgeFaces();
+    const labelList& boundaryFacePatches = mse.boundaryFacePatches();
+    const labelList& faceOwners = mse.faceOwners();
+
+    //- this is used for parallel runs
+    const Map<label>* otherProcPatchPtr(NULL);
+
+    if( Pstream::parRun() )
+    {
+        createNewFacesParallel(treatPatches);
+
+        otherProcPatchPtr = &mse.otherEdgeFacePatch();
+    }
+
+    //- create lists for new boundary faces
+    VRWGraph newBoundaryFaces;
+    labelLongList newBoundaryOwners;
+    labelLongList newBoundaryPatches;
+
+    //- create storage for new cells
+    VRWGraphList cellsToAdd;
+
+    //- create layer cells and store boundary faces
+    const label nOldCells = mesh_.cells().size();
+    forAll(bFaces, bfI)
+        if( treatPatches[boundaryFacePatches[bfI]] )
+        {
+            const face& f = bFaces[bfI];
+
+            faceList cellFaces(f.size() + 2);
+
+            label fI(0);
+
+            //- store boundary face
+            cellFaces[fI++] = f.reverseFace();
+
+            //- create parallel face
+            face newF(f.size());
+            forAll(f, pI)
+                newF[pI] = newLabelForVertex_[f[pI]];
+            cellFaces[fI++] = newF;
+
+            newBoundaryFaces.appendList(newF);
+            newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+            newBoundaryPatches.append(boundaryFacePatches[bfI]);
+
+            //- create quad faces
+            newF.setSize(4);
+            forAll(f, pI)
+            {
+                newF[0] = f[pI];
+                newF[1] = f.nextLabel(pI);
+                newF[2] = newLabelForVertex_[f.nextLabel(pI)];
+                newF[3] = newLabelForVertex_[f[pI]];
+
+                cellFaces[fI++] = newF;
+
+                //- check if the face is at the boundary
+                //- of the treated partitions
+                const label edgeI = faceEdges(bfI, pI);
+                if( edgeFaces.sizeOfRow(edgeI) == 2 )
+                {
+                    label neiFace = edgeFaces(edgeI, 0);
+                    if( neiFace == bfI )
+                        neiFace = edgeFaces(edgeI, 1);
+
+                    if( !treatPatches[boundaryFacePatches[neiFace]] )
+                    {
+                        newBoundaryFaces.appendList(newF);
+                        newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+                        newBoundaryPatches.append(boundaryFacePatches[neiFace]);
+                    }
+                }
+                else if( edgeFaces.sizeOfRow(edgeI) == 1 )
+                {
+                    const Map<label>& otherProcPatch = *otherProcPatchPtr;
+                    if( !treatPatches[otherProcPatch[edgeI]] )
+                    {
+                        newBoundaryFaces.appendList(newF);
+                        newBoundaryOwners.append(cellsToAdd.size() + nOldCells);
+                        newBoundaryPatches.append(otherProcPatch[edgeI]);
+                    }
+                }
+            }
+
+            cellsToAdd.appendGraph(cellFaces);
+        }
+        else
+        {
+            # ifdef DEBUGLayer
+            Info << "Storing original boundary face "
+                << bfI << " into patch " << boundaryFacePatches[bfI] << endl;
+            # endif
+
+            newBoundaryFaces.appendList(bFaces[bfI]);
+            newBoundaryOwners.append(faceOwners[bfI]);
+            newBoundaryPatches.append(boundaryFacePatches[bfI]);
+        }
+
+    //- create mesh modifier
+    polyMeshGenModifier meshModifier(mesh_);
+
+    meshModifier.addCells(cellsToAdd);
+    cellsToAdd.clear();
+    meshModifier.reorderBoundaryFaces();
+    meshModifier.replaceBoundary
+    (
+        patchNames_,
+        newBoundaryFaces,
+        newBoundaryOwners,
+        newBoundaryPatches
+    );
+
+    //- delete meshSurfaceEngine
+    this->clearOut();
+
+    # ifdef DEBUGLayer
+    mesh_.addressingData().checkMesh(true);
+    # endif
+
+    Info << "Finished creating layer cells" << endl;
+}
+
+void boundaryLayers::createNewFacesParallel
+(
+    const boolList& treatPatches
+)
+{
+    const meshSurfaceEngine& mse = surfaceEngine();
+    const faceList::subList& bFaces = mse.boundaryFaces();
+    const VRWGraph& faceEdges = mse.faceEdges();
+    const VRWGraph& edgeFaces = mse.edgeFaces();
+    const labelList& boundaryFacePatches = mse.boundaryFacePatches();
+    const labelList& globalEdgeLabel = mse.globalBoundaryEdgeLabel();
+    const Map<label>& globalToLocal = mse.globalToLocalBndEdgeAddressing();
+
+    const Map<label>& otherProcPatch = mse.otherEdgeFacePatch();
+    const Map<label>& otherFaceProc = mse.otherEdgeFaceAtProc();
+
+    //- the next stage is the generation of processor faces
+    //- this step can be done without any communication, but only if the faces
+    //- are added in the same order on both processors
+    //- this will be achieved by sorting edges according to their global labes
+    //- another difficulty here is that new processor patches may occur
+    //- during this procedure
+    Map<label> otherProcToProcPatch;
+    forAll(mesh_.procBoundaries(), patchI)
+    {
+        const processorBoundaryPatch& wp = mesh_.procBoundaries()[patchI];
+        otherProcToProcPatch.insert(wp.neiProcNo(), patchI);
+    }
+
+    label nTreatedEdges(0);
+    boolList treatEdge(edgeFaces.size(), false);
+    for
+    (
+        Map<label>::const_iterator iter=globalToLocal.begin();
+        iter!=globalToLocal.end();
+        ++iter
+    )
+    {
+        const label beI = iter();
+
+        if( edgeFaces.sizeOfRow(beI) != 1 )
+            continue;
+
+        if(
+            treatPatches[boundaryFacePatches[edgeFaces(beI, 0)]] &&
+            treatPatches[otherProcPatch[beI]]
+        )
+        {
+            ++nTreatedEdges;
+            treatEdge[beI] = true;
+        }
+    }
+
+    //- create a list of treated edges and sort the list
+    labelList treatedEdgeLabels(nTreatedEdges);
+    nTreatedEdges = 0;
+    forAll(treatEdge, beI)
+        if( treatEdge[beI] )
+        {
+            treatedEdgeLabels[nTreatedEdges++] = globalEdgeLabel[beI];
+        }
+    treatedEdgeLabels.setSize(nTreatedEdges);
+
+    sort(treatedEdgeLabels);
+
+    //- create additional processor patches if needed
+    forAll(treatedEdgeLabels, eI)
+    {
+        const label beI = globalToLocal[treatedEdgeLabels[eI]];
+
+        if( !otherProcToProcPatch.found(otherFaceProc[beI]) )
+        {
+            otherProcToProcPatch.insert
+            (
+                otherFaceProc[beI],
+                polyMeshGenModifier(mesh_).addProcessorPatch
+                (
+                    otherFaceProc[beI]
+                )
+            );
+        }
+    }
+
+    //- create new processor faces
+    VRWGraph newProcFaces;
+    labelLongList faceProcPatch;
+    FixedList<label, 4> newF;
+    forAll(treatedEdgeLabels, geI)
+    {
+        const label beI = globalToLocal[treatedEdgeLabels[geI]];
+
+        if( edgeFaces.sizeOfRow(beI) == 0 )
+            continue;
+
+        const label bfI = edgeFaces(beI, 0);
+        const label pos = faceEdges.containsAtPosition(bfI, beI);
+        const edge e = bFaces[bfI].faceEdge(pos);
+
+        if( otherFaceProc[beI] > Pstream::myProcNo() )
+        {
+            newF[0] = e.start();
+            newF[1] = e.end();
+            if( patchKey_.size() != 0 )
+            {
+                newF[2] =
+                    findNewNodeLabel(e.end(), patchKey_[otherProcPatch[beI]]);
+                newF[3] =
+                    findNewNodeLabel(e.start(), patchKey_[otherProcPatch[beI]]);
+            }
+            else
+            {
+                newF[2] = newLabelForVertex_[e.end()];
+                newF[3] = newLabelForVertex_[e.start()];
+            }
+        }
+        else
+        {
+            newF[0] = e.end();
+            if( patchKey_.size() != 0 )
+            {
+                newF[1] =
+                    findNewNodeLabel
+                    (
+                        e.end(),
+                        patchKey_[boundaryFacePatches[bfI]]
+                    );
+                newF[2] =
+                    findNewNodeLabel
+                    (
+                        e.start(),
+                        patchKey_[boundaryFacePatches[bfI]]
+                    );
+            }
+            else
+            {
+                newF[1] = newLabelForVertex_[e.end()];
+                newF[2] = newLabelForVertex_[e.start()];
+            }
+            newF[3] = e.start();
+        }
+
+        newProcFaces.appendList(newF);
+        faceProcPatch.append(otherProcToProcPatch[otherFaceProc[beI]]);
+    }
+
+    //- add faces into the mesh
+    polyMeshGenModifier(mesh_).addProcessorFaces(newProcFaces, faceProcPatch);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayersI.H

@@ -0,0 +1,299 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+
+\*---------------------------------------------------------------------------*/
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+label boundaryLayers::findNewNodeLabel
+(
+    const label pointI,
+    const label pKey
+) const
+{
+    if( otherVrts_.find(pointI) != otherVrts_.end() )
+    {
+        const std::map
+        <
+            label, std::map<std::pair<label, label>, label>
+        >::const_iterator it = otherVrts_.find(pointI);
+        const std::map<std::pair<label, label>, label>& m = it->second;
+
+        std::map<std::pair<label, label>, label>::const_iterator mit;
+        if( m.size() == 2 )
+        {
+            for(mit=m.begin();mit!=m.end();++mit)
+            {
+                if( mit->first.first != pKey )
+                    return mit->second;
+            }
+        }
+        else
+        {
+            for(mit=m.begin();mit!=m.end();++mit)
+            {
+                if( mit->first.first == pKey )
+                    continue;
+                if( mit->first.second == pKey )
+                    continue;
+                if( mit->first.first == mit->first.second )
+                    continue;
+                
+                return mit->second;
+            }
+        }
+    }
+
+    return newLabelForVertex_[pointI];
+}
+
+inline void boundaryLayers::createNewCellFromEdge
+(
+    const edge& e,
+    const label pKeyI,
+    const label pKeyJ,
+    FixedList<FixedList<label, 4>, 6>& cellFaces
+) const
+{
+    const std::map<std::pair<label, label>, label>& ms =
+        otherVrts_.find(e.start())->second;
+    const std::map<std::pair<label, label>, label>& me =
+        otherVrts_.find(e.end())->second;
+    
+    # ifdef DEBUGLayer
+    Info << "Creating cell for edge " << edgeI << " with nodes " << e << endl;
+    Info << "pKeyI " << pKeyI << endl;
+    Info << "pKeyJ " << pKeyJ << endl;
+    std::map<std::pair<label, label>, label>::const_iterator iter;
+    for(iter=ms.begin();iter!=ms.end();++iter)
+        Info << "1. Pair (" << iter->first.first << ", " 
+            << iter->first.second << ") has value " << iter->second << endl;
+    for(iter=me.begin();iter!=me.end();++iter)
+        Info << "2. Pair (" << iter->first.first << ", " 
+            << iter->first.second << ") has value " << iter->second << endl;
+    # endif
+    
+    label p0s(-1), p1s(-1), ns(-1), p0e(-1), p1e(-1), ne(-1);
+    
+    if( ms.size() == 2 )
+    {
+        p0s = ms.find(std::pair<label, label>(pKeyI, pKeyI))->second;
+        p1s = ms.find(std::pair<label, label>(pKeyJ, pKeyJ))->second;
+        ns = newLabelForVertex_[e.start()];
+    }
+    else
+    {
+        std::map<std::pair<label, label>, label>::const_iterator it;
+        for(it=ms.begin();it!=ms.end();++it)
+        {
+            if(
+                (it->first.first != pKeyJ) && (it->first.second != pKeyJ)
+                && (it->first.first != it->first.second)
+            )
+            {
+                p0s = it->second;
+            }
+            else if(
+                (it->first.first != pKeyI) && (it->first.second != pKeyI)
+                && (it->first.first != it->first.second)
+            )
+            {
+                p1s = it->second;
+            }
+            else if(
+                (it->first.first == it->first.second) &&
+                (it->first.first != pKeyI) && (it->first.first != pKeyJ)
+            )
+            {
+                ns = it->second;
+            }
+        }
+    }
+    if( me.size() == 2 )
+    {
+        p0e = me.find(std::pair<label, label>(pKeyI, pKeyI))->second;
+        p1e = me.find(std::pair<label, label>(pKeyJ, pKeyJ))->second;
+        ne = newLabelForVertex_[e.end()];
+    }
+    else
+    {
+        std::map<std::pair<label, label>, label>::const_iterator it;
+        for(it=me.begin();it!=me.end();++it)
+        {
+            if(
+                (it->first.first != pKeyJ) && (it->first.second != pKeyJ)
+                && (it->first.first != it->first.second)
+            )
+            {
+                p0e = it->second;
+            }
+            else if(
+                (it->first.first != pKeyI) && (it->first.second != pKeyI)
+                && (it->first.first != it->first.second)
+            )
+            {
+                p1e = it->second;
+            }
+            else if(
+                (it->first.first == it->first.second) &&
+                (it->first.first != pKeyI) && (it->first.first != pKeyJ)
+            )
+            {
+                ne = it->second;
+            }
+        }
+    }
+    
+    //- F0
+    cellFaces[0][0] = e.end();
+    cellFaces[0][1] = e.start();
+    cellFaces[0][2] = p1s;
+    cellFaces[0][3] = p1e;
+
+    //- F1
+    cellFaces[1][0] = p0e;
+    cellFaces[1][1] = ne;
+    cellFaces[1][2] = ns;
+    cellFaces[1][3] = p0s;
+
+    //- F2
+    cellFaces[2][0] = e.start();
+    cellFaces[2][1] = e.end();
+    cellFaces[2][2] = p0e;
+    cellFaces[2][3] = p0s;
+
+    //- F3
+    cellFaces[3][0] = p1s;
+    cellFaces[3][1] = ns;
+    cellFaces[3][2] = ne;
+    cellFaces[3][3] = p1e;
+
+    //- F4
+    cellFaces[4][0] = e.end();
+    cellFaces[4][1] = p1e;
+    cellFaces[4][2] = ne;
+    cellFaces[4][3] = p0e;
+
+    //- F5
+    cellFaces[5][0] = e.start();
+    cellFaces[5][1] = p0s;
+    cellFaces[5][2] = ns;
+    cellFaces[5][3] = p1s;
+}
+
+inline void boundaryLayers::createNewCellFromNode
+(
+    const label pointI,
+    const DynList<label, 3>& pKeys,
+    FixedList<FixedList<label, 4>, 6>& cellFaces
+) const
+{
+    const std::map<std::pair<label, label>, label>& m =
+        otherVrts_.find(pointI)->second;
+    
+    //- create labels before creating cells
+    const label n = newLabelForVertex_[pointI];
+    const label p00 =
+        m.find(std::pair<label, label>(pKeys[0], pKeys[0]))->second;
+    const label p11 =
+        m.find(std::pair<label, label>(pKeys[1], pKeys[1]))->second;
+    const label p22 =
+        m.find(std::pair<label, label>(pKeys[2], pKeys[2]))->second;
+
+    std::pair<label, label> pr;
+    pr.first = pKeys[0];
+    pr.second = pKeys[1];
+    if( m.find(pr) == m.end() )
+    {
+        pr.first = pKeys[1];
+        pr.second = pKeys[0];
+    }
+    const label p01 = m.find(pr)->second;
+    
+    pr.first = pKeys[0];
+    pr.second = pKeys[2];
+    if( m.find(pr) == m.end() )
+    {
+        pr.first = pKeys[2];
+        pr.second = pKeys[0];
+    }
+    const label p02 = m.find(pr)->second;
+    
+    pr.first = pKeys[1];
+    pr.second = pKeys[2];
+    if( m.find(pr) == m.end() )
+    {
+        pr.first = pKeys[2];
+        pr.second = pKeys[1];
+    }
+    const label p12 = m.find(pr)->second;
+    
+    //- create the cell and append it
+    
+    //- F0
+    cellFaces[0][0] = pointI;
+    cellFaces[0][1] = p02;
+    cellFaces[0][2] = p00;
+    cellFaces[0][3] = p01;
+    //- F1
+    cellFaces[1][0] = p12;
+    cellFaces[1][1] = p11;
+    cellFaces[1][2] = n;
+    cellFaces[1][3] = p22;
+
+    //- F2
+    cellFaces[2][0] = pointI;
+    cellFaces[2][1] = p01;
+    cellFaces[2][2] = p11;
+    cellFaces[2][3] = p12;
+    //- F3
+    cellFaces[3][0] = p02;
+    cellFaces[3][1] = p22;
+    cellFaces[3][2] = n;
+    cellFaces[3][3] = p00;
+    //- F4
+    cellFaces[4][0] = pointI;
+    cellFaces[4][1] = p12;
+    cellFaces[4][2] = p22;
+    cellFaces[4][3] = p02;
+    //- F5
+    cellFaces[5][0] = p01;
+    cellFaces[5][1] = p00;
+    cellFaces[5][2] = n;
+    cellFaces[5][3] = p11;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/boundaryLayersWrapperLayer.C

@@ -0,0 +1,75 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "boundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "demandDrivenData.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void boundaryLayers::addWrapperLayer()
+{
+    createOTopologyLayers();
+    
+    if( treatedPatch_[0] ) return;
+
+    const meshSurfaceEngine& mse = surfaceEngine();
+    
+    const labelList& bPoints = mse.boundaryPoints();
+    
+    boolList treatPatches(mesh_.boundaries().size(), true);
+    
+    labelLongList newLabelForVertex(nPoints_, -1);
+
+    pointFieldPMG& points = mesh_.points();
+    points.setSize(points.size() + bPoints.size());
+    forAll(bPoints, bpI)
+    {
+        points[nPoints_] = points[bPoints[bpI]];
+        newLabelForVertex[bPoints[bpI]] = nPoints_++;
+    }
+    
+    createNewFacesAndCells(treatPatches);
+    
+    forAll(treatPatches, patchI)
+        if( treatPatches[patchI] )
+            treatedPatch_[patchI] = true;
+        
+    //- delete surface engine
+    clearOut();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/extrudeLayer.H

@@ -0,0 +1,217 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    extrudeLayer
+
+Description
+    Creates a sheet of prismatic cells from the selected faces in
+    the direction of the specified cell for each face
+
+SourceFiles
+    extrudeLayer.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef extrudeLayer_H
+#define extrudeLayer_H
+
+#include "polyMeshGenModifier.H"
+#include "VRWGraphList.H"
+#include "labelPair.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                        Class extrudeLayer Declaration
+\*---------------------------------------------------------------------------*/
+
+class extrudeLayer
+{
+    // Private data
+    
+        //- Reference to the mesh
+        polyMeshGen& mesh_;
+    
+        //- thickness
+        const scalar thickness_; 
+    
+        //- number of points in the original mesh
+        const label nOrigPoints_;
+    
+        //- number of faces in the original mesh
+        const label nOrigFaces_;
+    
+        //- number of cells in the original mesh
+        const label nOrigCells_;
+    
+        //- pairs of faces making the extruded front
+        LongList<labelPair> extrudedFaces_;
+    
+        //- store the orientation of the extruded front
+        //- true if the pair has the same orientation and false otherwise
+        LongList<bool> pairOrientation_;
+    
+        //- original point label
+        labelLongList origPointLabel_;
+    
+    // Private member functions
+        //- duplicate faces which will be extruded
+        void createDuplicateFrontFaces(const LongList<labelPair>&);
+        
+        //- create new vertices and open the mesh
+        void createNewVertices();
+        
+        //- move points to make space for the new cells
+        void movePoints();
+        
+        //- create layer cells
+        void createLayerCells();
+        
+        //- create new faces at parallel boundaries
+        void createNewFacesParallel();
+        
+        //- update boundary patches
+        void updateBoundary();
+        
+    // Nested classes
+        //- this class provides addressing data needed for generating
+        //- cells emerging as a consequence of self-intersecting layers
+        class addressingCalculator
+        {
+            // Private data
+                //- const reference to mesh faces
+                const faceListPMG& faces_;
+                
+                //- const reference to extruded face pairs
+                const LongList<labelPair>& extrudedFaces_;
+            
+                //- const reference telling the orientation of each face pair
+                LongList<bool> pairOrientation_;
+            
+                //- const reference to the extruded faces at points
+                const VRWGraph& pointExtruded_;
+                
+            public:
+            
+            // Construct from faces, extruded face pairs and
+            // point-extrudedfaces addressing
+                addressingCalculator
+                (
+                    const faceListPMG& faces,
+                    const LongList<labelPair>& extrudedFaces,
+                    const LongList<bool>& pairOrientation,
+                    const VRWGraph& pointFaces
+                );
+            
+            // Destructor
+                ~addressingCalculator();
+
+            // Member functions
+                //- return label of the original face for the given face
+                inline label origFaceLabel(const label extrudedI) const;
+            
+                //- return position of point in extruded face
+                inline label positionInFace
+                (
+                    const label extrudedI,
+                    const label pointI
+                ) const;
+                
+                //- return point label in the original face
+                inline label origPointLabel
+                (
+                    const label extrudedI,
+                    const label pos
+                ) const;
+                
+                inline label origPoint
+                (
+                    const label extrudedI,
+                    const label pointI
+                ) const;
+                
+                //- find face sharing an edge with the given face
+                inline label faceSharingEdge
+                (
+                    const label extrudedI,
+                    const label eI
+                ) const;
+                
+                //- find faces attached to both points
+                inline void facesSharingEdge
+                (
+                    const label start,
+                    const label end,
+                    DynList<label>&
+                ) const;
+        };
+        
+    // Enumerators
+        enum extrudeLayerTypes_
+        {
+            NONE = 0,
+            FRONTVERTEX = 1,
+            FRONTVERTEXPROCBND = 2
+        };
+        
+        //- Disallow bitwise copy construct
+        extrudeLayer(const extrudeLayer&);
+        
+        //- Disallow bitwise assignment
+        void operator=(const extrudeLayer&);
+    
+    public:
+        
+        // Constructors
+    
+        //- Construct from mesh, extrusion faces, thickness and number of layers
+        extrudeLayer
+        (
+            polyMeshGen& mesh,
+            const LongList<labelPair>& extrusionFront,
+            const scalar thickness = -1.0
+        );
+    
+    // Destructor
+        ~extrudeLayer();
+    
+    // Public member functions
+};
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "extrudeLayerI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/extrudeLayerI.H

@@ -0,0 +1,168 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+
+\*---------------------------------------------------------------------------*/
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+inline label extrudeLayer::addressingCalculator::origFaceLabel
+(
+    const label extrudedI
+) const
+{
+    return extrudedFaces_[extrudedI].second();
+}
+
+inline label extrudeLayer::addressingCalculator::positionInFace
+(
+    const label extrudedI,
+    const label pointI
+) const
+{
+    const face& f = faces_[extrudedFaces_[extrudedI].first()];
+    
+    return f.which(pointI);
+}
+                
+inline label extrudeLayer::addressingCalculator::origPointLabel
+(
+    const label extrudedI,
+    const label pos
+) const
+{
+    const face& of = faces_[extrudedFaces_[extrudedI].second()];
+    
+    if( pairOrientation_[extrudedI] )
+    {
+        return of[pos];
+    }
+    else
+    {
+        return of[(of.size()-pos)%of.size()];
+    }
+    
+    FatalErrorIn
+    (
+        "label extrudeLayer::addressingCalculator::origPointLabel"
+        "(const label, const label) const"
+    ) << "Cannot find point for the given position" << abort(FatalError);
+    
+    return -1;
+}
+
+inline label extrudeLayer::addressingCalculator::origPoint
+(
+    const label extrudedI,
+    const label pointI
+) const
+{
+    const face& f = faces_[extrudedFaces_[extrudedI].first()];
+    const face& of = faces_[extrudedFaces_[extrudedI].second()];
+    const label pos = f.which(pointI);
+    
+    if( pairOrientation_[extrudedI] )
+    {
+        return of[pos];
+    }
+    else
+    {
+        return of[(of.size()-pos)%of.size()];
+    }
+    
+    FatalErrorIn
+    (
+        "label extrudeLayer::addressingCalculator::origPoint"
+        "(const label, const label) const"
+    ) << "Cannot find point for the given position" << abort(FatalError);
+    
+    return -1;
+}
+
+inline label extrudeLayer::addressingCalculator::faceSharingEdge
+(
+    const label extrudedI,
+    const label eI
+) const
+{
+    const face& f = faces_[extrudedFaces_[extrudedI].first()];
+    
+    const label pointI = f[eI];
+    const label nextI = f.nextLabel(eI);
+    
+    label otherFace(-1);
+    forAllRow(pointExtruded_, pointI, pfI)
+    {
+        const label currFaceI = pointExtruded_(pointI, pfI);
+        
+        if( currFaceI == extrudedI )
+            continue;
+        
+        if( pointExtruded_.contains(nextI, currFaceI) )
+        {
+            if( otherFace != -1 )
+                FatalErrorIn
+                (
+                    "label extrudeLayer::addressingCalculator::faceSharingEdge"
+                    "(const label, const label) const"
+                ) << "Expected only one such face"
+                    << abort(FatalError);
+            
+            otherFace = currFaceI;
+        }
+    }
+    
+    return otherFace;
+}
+
+inline void extrudeLayer::addressingCalculator::facesSharingEdge
+(
+    const label start,
+    const label end,
+    DynList<label>& edgeFaces
+) const
+{
+    edgeFaces.clear();
+    
+    forAllRow(pointExtruded_, start, pfI)
+    {
+        const label currFaceI = pointExtruded_(start, pfI);
+        
+        if( pointExtruded_.contains(end, currFaceI) )
+            edgeFaces.append(currFaceI);
+    }
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/refineBoundaryLayers.C

@@ -0,0 +1,357 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "refineBoundaryLayers.H"
+#include "meshSurfaceEngine.H"
+#include "demandDrivenData.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+const meshSurfaceEngine& refineBoundaryLayers::surfaceEngine() const
+{
+    if( !msePtr_ )
+        msePtr_ = new meshSurfaceEngine(mesh_);
+
+    return *msePtr_;
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+refineBoundaryLayers::refineBoundaryLayers(polyMeshGen& mesh)
+:
+    mesh_(mesh),
+    msePtr_(NULL),
+    globalNumLayers_(1),
+    globalThicknessRatio_(1.0),
+    globalMaxThicknessFirstLayer_(VGREAT),
+    numLayersForPatch_(),
+    thicknessRatioForPatch_(),
+    maxThicknessForPatch_(),
+    discontinuousLayersForPatch_(),
+    done_(false),
+    is2DMesh_(false),
+    nLayersAtBndFace_(),
+    splitEdges_(),
+    splitEdgesAtPoint_(),
+    newVerticesForSplitEdge_(),
+    facesFromFace_(),
+    newFaces_()
+{}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+refineBoundaryLayers::~refineBoundaryLayers()
+{
+    deleteDemandDrivenData(msePtr_);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void refineBoundaryLayers::avoidRefinement()
+{
+    globalNumLayers_ = 1;
+    numLayersForPatch_.clear();
+}
+
+void refineBoundaryLayers::activate2DMode()
+{
+    is2DMesh_ = true;
+}
+
+void refineBoundaryLayers::setGlobalNumberOfLayers(const label nLayers)
+{
+    if( nLayers < 2 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setGlobalNumberOfLayers(const label)"
+        ) << "The specified global number of boundary layers is less than 2"
+          << endl;
+
+        return;
+    }
+
+    globalNumLayers_ = nLayers;
+}
+
+void refineBoundaryLayers::setGlobalThicknessRatio(const scalar thicknessRatio)
+{
+    if( thicknessRatio < 1.0 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setGlobalThicknessRatio(const scalar)"
+        ) << "The specified global thickness ratio is less than 1.0" << endl;
+
+        return;
+    }
+
+    globalThicknessRatio_ = thicknessRatio;
+}
+
+void refineBoundaryLayers::setGlobalMaxThicknessOfFirstLayer
+(
+    const scalar maxThickness
+)
+{
+    if( maxThickness <= 0.0 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setGlobalMaxThicknessOfFirstLayer"
+            "(const scalar)"
+        ) << "The specified global maximum thickness of the first"
+          << " boundary layer is negative!!" << endl;
+
+        return;
+    }
+
+    globalMaxThicknessFirstLayer_ = maxThickness;
+}
+
+void refineBoundaryLayers::setNumberOfLayersForPatch
+(
+    const word& patchName,
+    const label nLayers
+)
+{
+    if( nLayers < 2 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setNumberOfLayersForPatch"
+            "(const word&, const label)"
+        ) << "The specified number of boundary layers for patch " << patchName
+          << " is less than 2" << endl;
+
+        return;
+    }
+
+    numLayersForPatch_[patchName] = nLayers;
+}
+
+void refineBoundaryLayers::setThicknessRatioForPatch
+(
+    const word& patchName,
+    const scalar thicknessRatio
+)
+{
+    if( thicknessRatio < 1.0 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setThicknessRatioForPatch"
+            "(const word&, const scalar)"
+        ) << "The specified thickness ratio for patch " << patchName
+          << " is less than 1.0" << endl;
+
+        return;
+    }
+
+    thicknessRatioForPatch_[patchName] = thicknessRatio;
+}
+
+void refineBoundaryLayers::setMaxThicknessOfFirstLayerForPatch
+(
+    const word& patchName,
+    const scalar maxThickness
+)
+{
+    if( maxThickness <= 0.0 )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::setGlobalMaxThicknessOfFirstLayer"
+            "(const word&, const scalar)"
+        ) << "The specified maximum thickness of the first boundary layer "
+          << "for patch " << patchName << " is negative!!" << endl;
+
+        return;
+    }
+
+    maxThicknessForPatch_[patchName] = maxThickness;
+}
+
+void refineBoundaryLayers::setInteruptForPatch(const word& patchName)
+{
+    discontinuousLayersForPatch_.insert(patchName);
+}
+
+void refineBoundaryLayers::refineLayers()
+{
+    bool refinePatch(false);
+    for
+    (
+        std::map<word, label>::const_iterator it=numLayersForPatch_.begin();
+        it!=numLayersForPatch_.end();
+        ++it
+    )
+        if( it->second > 1 )
+            refinePatch = true;
+
+    if( (globalNumLayers_ < 2) && !refinePatch )
+        return;
+
+    Info << "Starting refining boundary layers" << endl;
+
+    if( done_ )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::refineLayers()"
+        ) << "Boundary layers are already refined! Stopping refinement" << endl;
+
+        return;
+    }
+
+    analyseLayers();
+
+    if( !findSplitEdges() )
+    {
+        WarningIn
+        (
+            "void refineBoundaryLayers::refineLayers()"
+        ) << "Boundary layers do not exist in the mesh! Cannot refine" << endl;
+
+        return;
+    }
+
+    generateNewVertices();
+
+    generateNewFaces();
+
+    generateNewCells();
+
+    done_ = true;
+
+    Info << "Finished refining boundary layers" << endl;
+}
+
+void refineBoundaryLayers::readSettings
+(
+    const dictionary& meshDict,
+    refineBoundaryLayers& refLayers
+)
+{
+    if( meshDict.isDict("boundaryLayers") )
+    {
+        const dictionary& bndLayers = meshDict.subDict("boundaryLayers");
+
+        //- read global properties
+        if( bndLayers.found("nLayers") )
+        {
+            const label nLayers = readLabel(bndLayers.lookup("nLayers"));
+            refLayers.setGlobalNumberOfLayers(nLayers);
+        }
+        if( bndLayers.found("thicknessRatio") )
+        {
+            const scalar ratio = readScalar(bndLayers.lookup("thicknessRatio"));
+            refLayers.setGlobalThicknessRatio(ratio);
+        }
+        if( bndLayers.found("maxFirstLayerThickness") )
+        {
+            const scalar maxFirstThickness =
+                readScalar(bndLayers.lookup("maxFirstLayerThickness"));
+            refLayers.setGlobalMaxThicknessOfFirstLayer(maxFirstThickness);
+        }
+
+        //- patch-based properties
+        if( bndLayers.isDict("patchBoundaryLayers") )
+        {
+            const dictionary& patchBndLayers =
+                bndLayers.subDict("patchBoundaryLayers");
+            const wordList patchNames = patchBndLayers.toc();
+
+            forAll(patchNames, patchI)
+            {
+                const word pName = patchNames[patchI];
+
+                if( patchBndLayers.isDict(pName) )
+                {
+                    const dictionary& patchDict =
+                        patchBndLayers.subDict(pName);
+
+                    if( patchDict.found("nLayers") )
+                    {
+                        const label nLayers =
+                            readLabel(patchDict.lookup("nLayers"));
+
+                        refLayers.setNumberOfLayersForPatch(pName, nLayers);
+                    }
+                    if( patchDict.found("thicknessRatio") )
+                    {
+                        const scalar ratio =
+                            readScalar(patchDict.lookup("thicknessRatio"));
+                        refLayers.setThicknessRatioForPatch(pName, ratio);
+                    }
+                    if( patchDict.found("maxFirstLayerThickness") )
+                    {
+                        const scalar maxFirstThickness =
+                            readScalar
+                            (
+                                patchDict.lookup("maxFirstLayerThickness")
+                            );
+                        refLayers.setMaxThicknessOfFirstLayerForPatch
+                        (
+                            pName,
+                            maxFirstThickness
+                        );
+                    }
+                    if( patchDict.found("allowDiscontinuity") )
+                    {
+                        const bool allowDiscontinuity =
+                            readBool(patchDict.lookup("allowDiscontinuity"));
+
+                        if( allowDiscontinuity )
+                            refLayers.setInteruptForPatch(pName);
+                    }
+                }
+                else
+                {
+                    Warning << "Cannot refine layer for patch "
+                        << patchNames[patchI] << endl;
+                }
+            }
+        }
+    }
+    else
+    {
+        //- the layer will not be refined
+        refLayers.avoidRefinement();
+    }
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/boundaryLayers/refineBoundaryLayers.H

@@ -0,0 +1,406 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    refineBoundaryLayers
+
+Description
+    Refine existing boundary layers
+
+SourceFiles
+    refineBoundaryLayers.C
+    refineBoundaryLayersFunctions.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef refineBoundaryLayers_H
+#define refineBoundaryLayers_H
+
+#include "polyMeshGenModifier.H"
+#include "meshSurfaceEngine.H"
+#include "DynList.H"
+#include "labelLongList.H"
+#include "labelPair.H"
+
+#include <map>
+#include <set>
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// Forward declarations
+class meshSurfaceEngine;
+
+/*---------------------------------------------------------------------------*\
+                Class refineBoundaryLayers Declaration
+\*---------------------------------------------------------------------------*/
+
+class refineBoundaryLayers
+{
+        //- Reference to the mesh
+        polyMeshGen& mesh_;
+
+        //- pointer to mesh surface engine
+        mutable meshSurfaceEngine* msePtr_;
+
+        //- global number of boundary layers
+        label globalNumLayers_;
+
+        //- global thickness ratio
+        scalar globalThicknessRatio_;
+
+        //- global maximum thickness of the first layer
+        scalar globalMaxThicknessFirstLayer_;
+
+        //- number of boundary layers for user-selected patches
+        std::map<word, label> numLayersForPatch_;
+
+        //- local thickness ratio for selected patches
+        std::map<word, scalar> thicknessRatioForPatch_;
+
+        //- local maximum layer thickness for selected patches
+        std::map<word, scalar> maxThicknessForPatch_;
+
+        //- allow discontinuous layers for patch
+        std::set<word> discontinuousLayersForPatch_;
+
+        //- check whether the refinement is already executed
+        bool done_;
+
+        //- a flag whether a 2D mesh generation is active or not
+        bool is2DMesh_;
+
+        //- information about existing boundary layers at patches
+        //- only available layers
+        labelList layerAtPatch_;
+
+        //- which patches are part of a single layer
+        List<DynList<word> > patchesInLayer_;
+
+        //- a containing the number of layers which shall be generated above
+        //- a boundary face
+        labelList nLayersAtBndFace_;
+
+        //- a list of edges which shall be refined
+        LongList<edge> splitEdges_;
+
+        //- split edges at point
+        VRWGraph splitEdgesAtPoint_;
+
+        //- new vertices for on edges which shall be refined
+        VRWGraph newVerticesForSplitEdge_;
+
+        //- a graph containing information which new faces were generated
+        //- from an existing face
+        VRWGraph facesFromFace_;
+
+        //- a graph containing faces after layer refinement
+        VRWGraph newFaces_;
+
+    // Private member functions
+        //- Return reference to meshSurfaceEngine
+        const meshSurfaceEngine& surfaceEngine() const;
+
+        //- analyse layers to check their topology
+        void analyseLayers();
+
+        //- calculate addressing for a boundary cell
+        void calculateAddressing
+        (
+            const label bfI,
+            label& baseFace,
+            DynList<edge, 48>& edges,
+            DynList<DynList<label, 2>, 48>& edgeFaces,
+            DynList<DynList<label, 10>, 24>& faceEdges
+        ) const;
+
+        //- find bnd layer hairs for a boundary face
+        bool findHairsForFace(const label, DynList<edge>&) const;
+
+        //- find edges which shall be split due to refinement
+        bool findSplitEdges();
+
+        //- generate new points on edges, faces and in cells
+        void generateNewVertices();
+
+        //- refine a given face and return the new faces
+        //- generates new points at cross-split faces
+        void refineFace
+        (
+            const face& f,
+            const FixedList<label, 2>& nLayersInDirection,
+            DynList<DynList<label, 4>, 128>& newFaces
+        );
+
+        //- generate a matrix of points generated by splitting a face
+        //- and return them in the local i, j system of the face
+        void sortFacePoints
+        (
+            const label faceI,
+            DynList<DynList<label> >& facePoints,
+            const label transpose = false
+        ) const;
+
+        //- generate a matrix of faces generated by splitting a face
+        //- and return them in the local i, j, system of the face
+        void sortFaceFaces
+        (
+            const label faceI,
+            DynList<DynList<label> >& faceFaces,
+            const label transpose = false
+        ) const;
+
+        //- map split edges onto a cell
+        void generateNewFaces();
+
+        //- generate new cells for a prism with one boundary face
+        void generateNewCellsPrism
+        (
+            const label cellI,
+            DynList<DynList<DynList<label, 8>, 10> >& cellsFromCell
+        );
+
+        //- a helper function which stores faces generated from
+        //- an existing face into new cells
+        void storeFacesIntoCells
+        (
+            const label faceI,
+            const bool reverseOrientation,
+            const label normalDirection,
+            const bool maxCoordinate,
+            const label nLayersI,
+            const label nLayersJ,
+            const label nLayersK,
+            DynList<DynList<DynList<label, 4>, 6>, 256>& cellsFromCell
+        ) const;
+
+        //- generate new cells and add them to the mesh
+        void generateNewCells();
+
+    // Nested classes
+        class refineEdgeHexCell
+        {
+            // Private data
+                //- label of cell
+                const label cellI_;
+
+                //- number of cells in local direction i
+                label nLayersI_;
+
+                //- number of cells in locatiol direction j
+                label nLayersJ_;
+
+                //- container for new cells
+                DynList<DynList<DynList<label, 4>, 6>, 256> cellsFromCell_;
+
+                //- reference to the boundary layer class
+                refineBoundaryLayers& bndLayers_;
+
+                //- faces sorted into directions of a hex shape
+                FixedList<label, 6> faceInDirection_;
+
+                //- information about orientation of faces
+                //- false means the orientation as expected
+                //- true means wrong orientation
+                FixedList<bool, 6> faceOrientation_;
+
+                //- points on cross-split faces
+                FixedList<DynList<DynList<label> >, 2> cellPoints_;
+
+            // Private member functions
+                //- populate faceInDirection_nad wrongFaceOrientation_
+                void determineFacesInDirections();
+
+                //- populate new cells with new faces generated from already
+                //- existing faces
+                void populateExistingFaces();
+
+                //- generate new internal faces and tore them to new cells
+                void generateMissingFaces();
+
+        public:
+
+            // Constructor
+                //- construct from cell label and the refineBoundaryLayers
+                refineEdgeHexCell(const label cellI, refineBoundaryLayers& ref);
+
+            // Public member functions
+                inline const DynList<DynList<DynList<label, 4>, 6>, 256>&
+                newCells() const
+                {
+                    return cellsFromCell_;
+                }
+        };
+
+        class refineCornerHexCell
+        {
+            // Private data
+                //- label of cell
+                const label cellI_;
+
+                //- number of cells in local direction i
+                label nLayersI_;
+
+                //- number of cells in local direction j
+                label nLayersJ_;
+
+                //- number of cells in local direction k
+                label nLayersK_;
+
+                //- split edge in directions
+                FixedList<label, 3> splitEdgeInDirection_;
+
+                //- container for new cells
+                DynList<DynList<DynList<label, 4>, 6>, 256> cellsFromCell_;
+
+                //- reference to the boundary layer class
+                refineBoundaryLayers& bndLayers_;
+
+                //- faces sorted into directions of a hex shape
+                FixedList<label, 6> faceInDirection_;
+
+                //- information about orientation of faces
+                //- false means the orientation as expected
+                //- true means wrong orientation
+                FixedList<bool, 6> faceOrientation_;
+
+                //- points on cross-split faces
+                FixedList<DynList<DynList<label> >, 6> facePoints_;
+
+                //- points inside the cell
+                DynList<DynList<DynList<label> > > cellPoints_;
+
+            // Private member functions
+                //- populate faceInDirection_nad wrongFaceOrientation_
+                void determineFacesInDirections();
+
+                //- populate new cells with new faces generated from already
+                //- existing faces
+                void populateExistingFaces();
+
+                //- generate missing points inside the cell
+                void generateNewPoints();
+
+                //- generate new internal faces and tore them to new cells
+                void generateMissingFaces();
+
+        public:
+
+            // Constructor
+                //- construct from cell label and the refineBoundaryLayers
+                refineCornerHexCell
+                (
+                    const label cellI,
+                    refineBoundaryLayers& ref
+                );
+
+            // Public member functions
+                inline const DynList<DynList<DynList<label, 4>, 6>, 256>&
+                newCells() const
+                {
+                    return cellsFromCell_;
+                }
+        };
+
+    // Private member functions
+
+        //- Disallow bitwise copy construct
+        refineBoundaryLayers(const refineBoundaryLayers&);
+
+        //- Disallow bitwise assignment
+        void operator=(const refineBoundaryLayers&);
+
+public:
+
+    // Constructors
+
+        //- Construct from mesh reference
+        refineBoundaryLayers(polyMeshGen& mesh);
+
+    // Destructor
+        ~refineBoundaryLayers();
+
+    // Public member functions
+        //- set no refinement flag
+        void avoidRefinement();
+
+        //- activate 2D layer refinement
+        void activate2DMode();
+
+        //- set the global number of boundary layers
+        void setGlobalNumberOfLayers(const label nLayers);
+
+        //- set the global thickness ratio (default is 1)
+        void setGlobalThicknessRatio(const scalar thicknessRatio);
+
+        //- set the maximum thickness of the first boundary layer
+        void setGlobalMaxThicknessOfFirstLayer(const scalar maxThickness);
+
+        //- set the number of layers for a patch
+        //- the settings override the global settings
+        void setNumberOfLayersForPatch
+        (
+            const word& patchName,
+            const label nLayers
+        );
+
+        //- set the thickness ratio for a patch
+        //- it overrides the global settings
+        void setThicknessRatioForPatch
+        (
+            const word& patchName,
+            const scalar thicknessRatio
+        );
+
+        //- set the maximum thickness of the first layer for a patch
+        void setMaxThicknessOfFirstLayerForPatch
+        (
+            const word& patchName,
+            const scalar maxThickness
+        );
+
+        //- set whether the settings for a given patch are valid for the
+        //- patch only, or whether they extend over th whole sheet
+        //- the selected patch belongs to
+        //- the default behaviour is to apply the patch settings to the whole
+        //- sheet
+        void setInteruptForPatch(const word& patchName);
+
+        //- performs refinement based on the given settings
+        void refineLayers();
+
+        //- read the settings from dictionary
+        static void readSettings(const dictionary&, refineBoundaryLayers&);
+};
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/checkMeshDict/checkMeshDict.C

@@ -0,0 +1,903 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+\*---------------------------------------------------------------------------*/
+
+#include "checkMeshDict.H"
+#include "patchRefinementList.H"
+#include "PtrList.H"
+#include "LongList.H"
+#include "objectRefinement.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void checkMeshDict::checkPatchCellSize() const
+{
+    if( meshDict_.found("patchCellSize") )
+    {
+        if( meshDict_.isDict("patchCellSize") )
+        {
+            const dictionary& dict = meshDict_.subDict("patchCellSize");
+
+            const wordList patchNames = dict.toc();
+            patchNames.size();
+        }
+        else
+        {
+            patchRefinementList prl(meshDict_.lookup("patchCellSize"));
+            prl.size();
+        }
+    }
+}
+
+void checkMeshDict::checkSubsetCellSize() const
+{
+    if( meshDict_.found("subsetCellSize") )
+    {
+        if( meshDict_.isDict("subsetCellSize") )
+        {
+            const dictionary& dict = meshDict_.subDict("subsetCellSize");
+
+            const wordList subsetNames = dict.toc();
+            subsetNames.size();
+        }
+        else
+        {
+            patchRefinementList prl(meshDict_.lookup("patchCellSize"));
+        }
+    }
+}
+
+void checkMeshDict::checkLocalRefinementLevel() const
+{
+    if( meshDict_.found("localRefinement") )
+    {
+        if( meshDict_.isDict("localRefinement") )
+        {
+            const dictionary& refDict = meshDict_.subDict("localRefinement");
+            const wordList entries = refDict.toc();
+
+            forAll(entries, dictI)
+            {
+                const dictionary& dict = refDict.subDict(entries[dictI]);
+
+                if( dict.found("cellSize") )
+                {
+                    const scalar cs = readScalar(dict.lookup("cellSize"));
+
+                    if( cs > 0.0 )
+                        continue;
+
+                    WarningIn
+                    (
+                        "void checkMeshDict::checkLocalRefinementLevel() const"
+                    ) << "Cell size for " << entries[dictI]
+                         << " is negative" << endl;
+                }
+                else if( dict.found("additionalRefinementLevels") )
+                {
+                    const label nLevels =
+                        readLabel(dict.lookup("additionalRefinementLevels"));
+
+                    if( nLevels > 0 )
+                        continue;
+
+                    WarningIn
+                    (
+                        "void checkMeshDict::checkLocalRefinementLevel() const"
+                    ) << "Refinement level for " << entries[dictI]
+                         << " is negative" << endl;
+                }
+                else
+                {
+                    FatalErrorIn
+                    (
+                        "void checkMeshDict::checkLocalRefinementLevel() const"
+                    ) << "Cannot read keyword"
+                      << " additionalRefinementLevels or cellSize"
+                      << "for " << entries[dictI] << exit(FatalError);
+                }
+            }
+        }
+        else
+        {
+            FatalErrorIn
+            (
+                "void checkMeshDict::checkLocalRefinementLevel() const"
+            ) << "Cannot read localRefinement" << exit(FatalError);
+        }
+    }
+}
+
+void checkMeshDict::checkKeepCellsIntersectingPatches() const
+{
+    if( meshDict_.found("keepCellsIntersectingPatches") )
+    {
+        if( meshDict_.isDict("keepCellsIntersectingPatches") )
+        {
+            const dictionary& dict =
+                meshDict_.subDict("keepCellsIntersectingPatches");
+
+            const wordList patchNames = dict.toc();
+            patchNames.size();
+        }
+        else
+        {
+            wordList kcip(meshDict_.lookup("keepCellsIntersectingPatches"));
+        }
+    }
+}
+
+void checkMeshDict::checkRemoveCellsIntersectingPatches() const
+{
+    if( meshDict_.found("removeCellsIntersectingPatches") )
+    {
+        if( meshDict_.isDict("removeCellsIntersectingPatches") )
+        {
+            const dictionary& dict =
+                meshDict_.subDict("removeCellsIntersectingPatches");
+
+            const wordList patchNames = dict.toc();
+            patchNames.size();
+        }
+        else
+        {
+            wordList kcip(meshDict_.lookup("removeCellsIntersectingPatches"));
+        }
+    }
+}
+
+void checkMeshDict::checkObjectRefinements() const
+{
+    if( meshDict_.found("objectRefinements") )
+    {
+        PtrList<objectRefinement> refObjects;
+
+        if( meshDict_.isDict("objectRefinements") )
+        {
+            const dictionary& dict = meshDict_.subDict("objectRefinements");
+            const wordList objectNames = dict.toc();
+
+            refObjects.setSize(objectNames.size());
+
+            forAll(refObjects, objectI)
+            {
+                const entry& objectEntry =
+                    dict.lookupEntry(objectNames[objectI], false, false);
+
+                refObjects.set
+                (
+                    objectI,
+                    objectRefinement::New
+                    (
+                        objectEntry.keyword(),
+                        objectEntry.dict()
+                    )
+                );
+            }
+        }
+        else
+        {
+            Istream& is = meshDict_.lookup("objectRefinements");
+
+            PtrList<entry> objectEntries(is);
+            refObjects.setSize(objectEntries.size());
+
+            forAll(refObjects, objectI)
+            {
+                refObjects.set
+                (
+                    objectI,
+                    objectRefinement::New
+                    (
+                        objectEntries[objectI].keyword(),
+                        objectEntries[objectI].dict()
+                    )
+                );
+            }
+        }
+    }
+}
+
+void checkMeshDict::checkBoundaryLayers() const
+{
+    if( meshDict_.found("boundaryLayers") )
+    {
+        const dictionary& bndLayers = meshDict_.subDict("boundaryLayers");
+
+        //- read global properties
+        if( bndLayers.found("nLayers") )
+        {
+            readLabel(bndLayers.lookup("nLayers"));
+        }
+        if( bndLayers.found("thicknessRatio") )
+        {
+            readScalar(bndLayers.lookup("thicknessRatio"));
+        }
+        if( bndLayers.found("maxFirstLayerThickness") )
+        {
+            readScalar(bndLayers.lookup("maxFirstLayerThickness"));
+        }
+
+        //- patch-based properties
+        if( bndLayers.isDict("patchBoundaryLayers") )
+        {
+            const dictionary& patchBndLayers =
+                bndLayers.subDict("patchBoundaryLayers");
+            const wordList patchNames = patchBndLayers.toc();
+
+            forAll(patchNames, patchI)
+            {
+                const word pName = patchNames[patchI];
+
+                if( patchBndLayers.isDict(pName) )
+                {
+                    const dictionary& patchDict =
+                        patchBndLayers.subDict(pName);
+
+                    if( patchDict.found("nLayers") )
+                    {
+                        readLabel(patchDict.lookup("nLayers"));
+                    }
+                    if( patchDict.found("thicknessRatio") )
+                    {
+                        readScalar(patchDict.lookup("thicknessRatio"));
+                    }
+                    if( patchDict.found("maxFirstLayerThickness") )
+                    {
+                        readScalar(patchDict.lookup("maxFirstLayerThickness"));
+                    }
+                    if( patchDict.found("allowDiscontinuity") )
+                    {
+                        readBool(patchDict.lookup("allowDiscontinuity"));
+                    }
+                }
+                else
+                {
+                    Warning << "Cannot refine layer for patch "
+                        << patchNames[patchI] << endl;
+                }
+            }
+        }
+    }
+}
+
+void checkMeshDict::checkRenameBoundary() const
+{
+    if( meshDict_.found("renameBoundary") )
+    {
+        const dictionary& dict = meshDict_.subDict("renameBoundary");
+        if( dict.found("newPatchNames") )
+        {
+            if( dict.isDict("newPatchNames") )
+            {
+                const dictionary& patchDicts = dict.subDict("newPatchNames");
+
+                const wordList patchNames = patchDicts.toc();
+
+                forAll(patchNames, patchI)
+                {
+                    const word& pName = patchNames[patchI];
+
+                    if( !patchDicts.isDict(pName) )
+                        FatalErrorIn
+                        (
+                            "void checkMeshDict::checkRenameBoundary() const"
+                        ) << "Entry " << pName
+                          << " is not a dictionary" << exit(FatalError);
+
+                    const dictionary dict = patchDicts.subDict(pName);
+
+                    if( !dict.found("newName") )
+                        FatalErrorIn
+                        (
+                            "void checkMeshDict::checkRenameBoundary() const"
+                        ) << "Dictionary " << pName
+                          << " does not contain a newName keyword"
+                          << exit(FatalError);
+                }
+            }
+            else
+            {
+                const PtrList<entry> patchesToRename
+                (
+                    dict.lookup("newPatchNames")
+                );
+
+                forAll(patchesToRename, patchI)
+                {
+                    const word& pName = patchesToRename[patchI].keyword();
+
+                    const dictionary dict = patchesToRename[patchI].dict();
+
+                    if( !dict.found("newName") )
+                        FatalErrorIn
+                        (
+                            "void checkMeshDict::checkRenameBoundary() const"
+                        ) << "Dictionary " << pName
+                          << " does not contain a newName keyword"
+                          << exit(FatalError);
+                }
+            }
+        }
+    }
+}
+
+void checkMeshDict::checkEntries() const
+{
+    checkPatchCellSize();
+
+    checkSubsetCellSize();
+
+    checkKeepCellsIntersectingPatches();
+
+    checkRemoveCellsIntersectingPatches();
+
+    checkObjectRefinements();
+
+    checkBoundaryLayers();
+
+    checkRenameBoundary();
+}
+
+void checkMeshDict::updatePatchCellSize
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+    if( meshDict_.found("patchCellSize") )
+    {
+        LongList<patchRefinement> updatedPatchRefinement;
+
+        if( meshDict_.isDict("patchCellSize") )
+        {
+            const dictionary dict = meshDict_.subDict("patchCellSize");
+
+            const wordList patchNames = dict.toc();
+
+            forAll(patchNames, patchI)
+            {
+                const word& pName = patchNames[patchI];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+                if( it == patchesFromPatch.end() )
+                    continue;
+
+                const wordList& updatedPatchNames = it->second;
+
+                const dictionary& pDict = dict.subDict(pName);
+                const scalar cellSize = readScalar(pDict.lookup("cellSize"));
+
+                forAll(updatedPatchNames, nameI)
+                    updatedPatchRefinement.append
+                    (
+                        patchRefinement
+                        (
+                            updatedPatchNames[nameI],
+                            cellSize
+                        )
+                    );
+            }
+        }
+        else
+        {
+            patchRefinementList prl(meshDict_.lookup("patchCellSize"));
+            forAll(prl, prlI)
+            {
+                const word& pName = prl[prlI].patchName();
+                const scalar cellSize = prl[prlI].cellSize();
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+
+                if( it == patchesFromPatch.end() )
+                    continue;
+
+                const wordList& updatedPatchNames = it->second;
+                forAll(updatedPatchNames, nameI)
+                    updatedPatchRefinement.append
+                    (
+                        patchRefinement
+                        (
+                            updatedPatchNames[nameI],
+                            cellSize
+                        )
+                    );
+            }
+        }
+
+        meshDict_.add("patchCellSize", updatedPatchRefinement, true);
+    }
+}
+
+void checkMeshDict::updateSubsetCellSize
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+
+}
+
+void checkMeshDict::updateLocalRefinementLevel
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+    if( meshDict_.found("localRefinement") )
+    {
+        if( meshDict_.isDict("localRefinement") )
+        {
+            dictionary& dict = meshDict_.subDict("localRefinement");
+
+            const wordList entries = dict.toc();
+
+            forAll(entries, dictI)
+            {
+                const word& pName = entries[dictI];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+                if( it == patchesFromPatch.end() )
+                    continue;
+
+                const wordList& updatedPatchNames = it->second;
+
+                const dictionary& pDict = dict.subDict(pName);
+                dictionary copy;
+                if( pDict.found("additionalRefinementLevels") )
+                {
+                    const label nLevels =
+                        readLabel(pDict.lookup("additionalRefinementLevels"));
+
+                    copy.add("additionalRefinementLevels", nLevels);
+                }
+                else if( pDict.found("cellSize") )
+                {
+                    const scalar cs = readScalar(pDict.lookup("cellSize"));
+
+                    copy.add("cellSize", cs);
+                }
+
+                //- add new patches
+                forAll(updatedPatchNames, nameI)
+                    dict.add(updatedPatchNames[nameI], copy);
+
+                //- remove the current patch
+                dict.remove(pName);
+            }
+        }
+    }
+}
+
+void checkMeshDict::updateKeepCellsIntersectingPatches
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+    if( meshDict_.found("keepCellsIntersectingPatches") )
+    {
+        LongList<word> updatedPatchNames;
+        if( meshDict_.isDict("keepCellsIntersectingPatches") )
+        {
+            const dictionary& dict =
+                meshDict_.subDict("keepCellsIntersectingPatches");
+
+            const wordList patchNames = dict.toc();
+            forAll(patchNames, patchI)
+            {
+                const word& pName = patchNames[patchI];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+
+                if( it == patchesFromPatch.end() )
+                    updatedPatchNames.append(pName);
+
+                const wordList& newPatchNames = it->second;
+
+                forAll(newPatchNames, nameI)
+                    updatedPatchNames.append(newPatchNames[nameI]);
+            }
+        }
+        else
+        {
+            wordList kcip(meshDict_.lookup("keepCellsIntersectingPatches"));
+
+            forAll(kcip, i)
+            {
+                const word& pName = kcip[i];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+
+                if( it == patchesFromPatch.end() )
+                    updatedPatchNames.append(pName);
+
+                const wordList& newPatchNames = it->second;
+
+                forAll(newPatchNames, nameI)
+                    updatedPatchNames.append(newPatchNames[nameI]);
+            }
+        }
+
+        meshDict_.add("keepCellsIntersectingPatches", updatedPatchNames, true);
+    }
+}
+
+
+void checkMeshDict::updateRemoveCellsIntersectingPatches
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+    if( meshDict_.found("removeCellsIntersectingPatches") )
+    {
+        LongList<word> updatedPatchNames;
+        if( meshDict_.isDict("removeCellsIntersectingPatches") )
+        {
+            const dictionary& dict =
+                meshDict_.subDict("removeCellsIntersectingPatches");
+
+            const wordList patchNames = dict.toc();
+            forAll(patchNames, patchI)
+            {
+                const word& pName = patchNames[patchI];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+
+                if( it == patchesFromPatch.end() )
+                    updatedPatchNames.append(pName);
+
+                const wordList& newPatchNames = it->second;
+
+                forAll(newPatchNames, nameI)
+                    updatedPatchNames.append(newPatchNames[nameI]);
+            }
+        }
+        else
+        {
+            wordList kcip(meshDict_.lookup("removeCellsIntersectingPatches"));
+
+            forAll(kcip, i)
+            {
+                const word& pName = kcip[i];
+
+                std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+
+                if( it == patchesFromPatch.end() )
+                    updatedPatchNames.append(pName);
+
+                const wordList& newPatchNames = it->second;
+
+                forAll(newPatchNames, nameI)
+                    updatedPatchNames.append(newPatchNames[nameI]);
+            }
+        }
+
+        meshDict_.add
+        (
+            "removeCellsIntersectingPatches",
+            updatedPatchNames,
+            true
+        );
+    }
+}
+
+void checkMeshDict::updateObjectRefinements
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+
+}
+
+void checkMeshDict::updateBoundaryLayers
+(
+    const std::map<word, wordList>& patchesFromPatch
+)
+{
+    if( meshDict_.isDict("boundaryLayers") )
+    {
+        dictionary& bndLayersDict = meshDict_.subDict("boundaryLayers");
+        if( bndLayersDict.isDict("patchBoundaryLayers") )
+        {
+            dictionary& patchBndLayers =
+                bndLayersDict.subDict("patchBoundaryLayers");
+
+            const wordList patchLayers = patchBndLayers.toc();
+
+            forAll(patchLayers, patchI)
+            {
+                const word& pName = patchLayers[patchI];
+
+                dictionary dict = patchBndLayers.subDict(pName);
+
+                const std::map<word, wordList>::const_iterator it =
+                    patchesFromPatch.find(pName);
+                const wordList& newNames = it->second;
+
+                forAll(newNames, i)
+                {
+                    patchBndLayers.add(newNames[i], dict);
+                }
+
+                patchBndLayers.remove(pName);
+            }
+        }
+    }
+}
+
+void checkMeshDict::updateRenameBoundary
+(
+    const std::map<word, wordList>& patchesFromPatch,
+    const std::map<word, word>& patchTypes
+)
+{
+    dictionary newDict;
+
+    newDict.add("newPatchNames", dictionary());
+
+    if( meshDict_.found("renameBoundary") )
+    {
+        const dictionary& dict = meshDict_.subDict("renameBoundary");
+
+        //- transfer or generate the default name entry
+        if( dict.found("defaultName") )
+        {
+            const word name(dict.lookup("defaultName"));
+            newDict.add("defaultName", name);
+        }
+        else
+        {
+            newDict.add("defaultName", "walls");
+        }
+
+        //- transfer or generate the defaultType entry
+        if( dict.found("defaultType") )
+        {
+            const word type(dict.lookup("defaultType"));
+            newDict.add("defaultType", type);
+        }
+        else
+        {
+            newDict.add("defaultType", "wall");
+        }
+
+        if( dict.found("newPatchNames") )
+        {
+            //- stores the updated dictionary
+            dictionary& newPatchesDict = newDict.subDict("newPatchNames");
+
+            if( dict.isDict("newPatchNames") )
+            {
+                //- current state of the dictionary
+                const dictionary& patchDicts = dict.subDict("newPatchNames");
+
+                std::map<word, wordList>::const_iterator it;
+                for(it=patchesFromPatch.begin();it!=patchesFromPatch.end();++it)
+                {
+                    const word& pName = it->first;
+                    const wordList& newNames = it->second;
+
+                    if( patchDicts.found(pName) )
+                    {
+                        //- patch renaming is already requested by the user
+                        //- use the new name for all newly created patches
+                        const dictionary& patchDict = patchDicts.subDict(pName);
+                        if( !patchDict.found("newName") )
+                            continue;
+                        if( !patchDict.found("type") )
+                            continue;
+
+                        const word newName(patchDict.lookup("newName"));
+                        const word newType(patchDict.lookup("type"));
+
+                        forAll(newNames, i)
+                        {
+                            dictionary newPatchDict;
+                            newPatchDict.add("newName", newName);
+                            newPatchDict.add("type", newType);
+
+                            newPatchesDict.add(newNames[i], newPatchDict);
+                        }
+                    }
+                    else
+                    {
+                        //- rename all newly create patches
+                        //- with the original name
+                        forAll(newNames, i)
+                        {
+                            dictionary newPatchDict;
+
+                            newPatchDict.add("newName", it->first);
+                            std::map<word, word>::const_iterator tIter =
+                                patchTypes.find(it->first);
+                            newPatchDict.add("type", tIter->second);
+
+                            newPatchesDict.add(newNames[i], newPatchDict);
+                        }
+                    }
+                }
+            }
+            else
+            {
+                const PtrList<entry> patchEntries(dict.lookup("newPatchNames"));
+
+                forAll(patchEntries, entryI)
+                {
+                    const word& pName = patchEntries[entryI].keyword();
+                    dictionary patchDict(patchEntries[entryI].dict());
+
+                    std::map<word, wordList>::const_iterator it =
+                        patchesFromPatch.find(pName);
+
+                    if( it == patchesFromPatch.end() )
+                        continue;
+
+                    const wordList& newNames = it->second;
+
+                    forAll(newNames, i)
+                        newPatchesDict.add(newNames[i], patchDict, true);
+                }
+
+                std::map<word, wordList>::const_iterator it;
+                for(it=patchesFromPatch.begin();it!=patchesFromPatch.end();++it)
+                {
+                    const word& pName = it->first;
+                    const wordList& newNames = it->second;
+
+                    if( newPatchesDict.found(pName) )
+                        continue;
+
+                    //- rename all newly created patches
+                    //- with the original name
+                    forAll(newNames, i)
+                    {
+                        dictionary newPatchDict;
+
+                        newPatchDict.add("newName", it->first);
+                        std::map<word, word>::const_iterator tIter =
+                            patchTypes.find(it->first);
+                        newPatchDict.add("type", tIter->second);
+
+                        newPatchesDict.add(newNames[i], newPatchDict);
+                    }
+                }
+            }
+        }
+        else
+        {
+            //- newPatchNames is not used
+            dictionary& newPatchesDict = newDict.subDict("newPatchNames");
+
+            std::map<word, wordList>::const_iterator it;
+            for(it=patchesFromPatch.begin();it!=patchesFromPatch.end();++it)
+            {
+                const wordList& newPatchNames = it->second;
+
+                forAll(newPatchNames, i)
+                {
+                    const word& pName = newPatchNames[i];
+                    dictionary newPatchDict;
+                    newPatchDict.add("newName", it->first);
+                    std::map<word, word>::const_iterator tIter =
+                        patchTypes.find(it->first);
+                    newPatchDict.add("type", tIter->second);
+
+                    newPatchesDict.add(pName, newPatchDict);
+                }
+            }
+        }
+
+        //- delete all previus entries from the dictionary
+        meshDict_.subDict("renameBoundary").clear();
+    }
+    else
+    {
+        //- create the dictionary if it has not existed before
+        newDict.add("defaultName", "walls");
+        newDict.add("defaultType", "wall");
+
+        dictionary& newPatchesDict = newDict.subDict("newPatchNames");
+
+        std::map<word, wordList>::const_iterator it;
+        for(it=patchesFromPatch.begin();it!=patchesFromPatch.end();++it)
+        {
+            const wordList& newPatchNames = it->second;
+
+            forAll(newPatchNames, i)
+            {
+                const word& pName = newPatchNames[i];
+                dictionary newPatchDict;
+                newPatchDict.add("newName", it->first);
+                std::map<word, word>::const_iterator tIter =
+                    patchTypes.find(it->first);
+                newPatchDict.add("type", tIter->second);
+
+                newPatchesDict.add(pName, newPatchDict);
+            }
+        }
+    }
+
+    meshDict_.add("renameBoundary", newDict, true);
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+checkMeshDict::checkMeshDict
+(
+    IOdictionary& meshDict
+)
+:
+    meshDict_(meshDict)
+{
+    checkEntries();
+}
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+checkMeshDict::~checkMeshDict()
+{}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+void checkMeshDict::updateDictionaries
+(
+    const std::map<word, wordList>& patchesFromPatch,
+    const std::map<word, word>& patchTypes,
+    const bool renamePatches
+)
+{
+    updatePatchCellSize(patchesFromPatch);
+
+    updateSubsetCellSize(patchesFromPatch);
+
+    updateLocalRefinementLevel(patchesFromPatch);
+
+    updateKeepCellsIntersectingPatches(patchesFromPatch);
+
+    updateRemoveCellsIntersectingPatches(patchesFromPatch);
+
+    updateObjectRefinements(patchesFromPatch);
+
+    updateBoundaryLayers(patchesFromPatch);
+
+    if( renamePatches )
+        updateRenameBoundary(patchesFromPatch, patchTypes);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/checkMeshDict/checkMeshDict.H

@@ -0,0 +1,148 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    checkMeshDict
+
+Description
+    Check whether the meshDict file is set correctly
+
+SourceFiles
+    checkMeshDict.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef checkMeshDict_H
+#define checkMeshDict_H
+
+#include "IOdictionary.H"
+
+#include <map>
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                        Class checkMeshDict Declaration
+\*---------------------------------------------------------------------------*/
+
+class checkMeshDict
+{
+        //- Reference to the mesh
+        IOdictionary& meshDict_;
+
+    // Private member functions
+        //- check patchCellSize entry
+        void checkPatchCellSize() const;
+
+        //- check subsetCellSize entry
+        void checkSubsetCellSize() const;
+
+        //- check local refinement level
+        void checkLocalRefinementLevel() const;
+
+        //- check keepCellsIntersectingPatches entry
+        void checkKeepCellsIntersectingPatches() const;
+
+        //- check removeCellsIntersectingPatches entry
+        void checkRemoveCellsIntersectingPatches() const;
+
+        //- check objectRefinements entry
+        void checkObjectRefinements() const;
+
+        //- check entry for boundary layers
+        void checkBoundaryLayers() const;
+
+        //- check renameBoundary entry
+        void checkRenameBoundary() const;
+
+        //- perform all checks
+        void checkEntries() const;
+
+        //- update patchCellSize entry
+        void updatePatchCellSize(const std::map<word, wordList>&);
+
+        //- update subsetCellSize entry
+        void updateSubsetCellSize(const std::map<word, wordList>&);
+
+        //- update local refinement
+        void updateLocalRefinementLevel(const std::map<word, wordList>&);
+
+        //- check keepCellsIntersectingPatches entry
+        void updateKeepCellsIntersectingPatches
+        (
+            const std::map<word, wordList>&
+        );
+
+        //- check removeCellsIntersectingPatches entry
+        void updateRemoveCellsIntersectingPatches
+        (
+            const std::map<word, wordList>&
+        );
+
+        //- check objectRefinements entry
+        void updateObjectRefinements(const std::map<word, wordList>&);
+
+        //- check entry for boundary layers
+        void updateBoundaryLayers(const std::map<word, wordList>&);
+
+        //- check renameBoundary entry
+        void updateRenameBoundary
+        (
+            const std::map<word, wordList>&,
+            const std::map<word, word>&
+        );
+
+    public:
+
+    // Constructors
+
+        //- Construct from IOdictionary
+        checkMeshDict(IOdictionary& meshDict);
+
+    // Destructor
+        ~checkMeshDict();
+
+    // Public member functions
+
+        //- update meshDict based on modification of patches in the surface
+        void updateDictionaries
+        (
+            const std::map<word, wordList>& patchesForPatch,
+            const std::map<word, word>& patchTypes,
+            const bool renamePatches = true
+        );
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/DynList/DynList.C

@@ -0,0 +1,85 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "DynList.H"
+
+// * * * * * * * * * * * * * * * IOstream Operators  * * * * * * * * * * * * //
+
+// Construct from Istream
+template<class T, Foam::label staticSize>
+Foam::DynList<T, staticSize>::DynList(Istream& is)
+:
+    UList<T>(),
+    nextFree_(0)
+{
+    FatalErrorIn
+    (
+        "template<class T, Foam::label staticSize>"
+        "\nFoam::DynList<T, staticSize>::DynList(Istream& is)"
+    ) << "Not implemented" << exit(FatalError);
+    
+    List<T> helper(is);
+    
+    nextFree_ = helper.size();
+    UList<T>::swap(helper);
+}
+
+
+template<class T, Foam::label staticSize>
+Foam::Ostream& Foam::operator<<
+(
+    Foam::Ostream& os,
+    const Foam::DynList<T, staticSize>& DL
+)
+{
+    UList<T> helper(const_cast<T*>(DL.begin()), DL.nextFree_);
+    os << helper;
+
+    return os;
+}
+
+
+template<class T, Foam::label staticSize>
+Foam::Istream& Foam::operator>>
+(
+    Foam::Istream& is,
+    Foam::DynList<T, staticSize>& DL
+)
+{
+    FatalErrorIn
+    (
+        "template<class T, Foam::label staticSize>"
+        "\nFoam::Istream& Foam::operator>>"
+        "(Foam::Istream& is, Foam::DynList<T, staticSize>& DL)"
+    ) << "Not implemented" << exit(FatalError);
+    
+    is >> static_cast<List<T>&>(DL);
+    DL.nextFree_ = DL.List<T>::size();
+
+    return is;
+}
+
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/DynList/DynList.H

@@ -0,0 +1,245 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    DynList
+
+Description
+    A dynamic list is a 1-D vector of objects of type T which resizes
+    itself as necessary to accept the new objects.  Internal storage
+    is a compact array and the list can be shrunk to compact storage.
+    The increase of list size is controlled by three template parameters,
+    which allows the list storage to either increase by the given increment
+    or the given multiplier and divider (allowing non-integer multiples).
+
+SourceFiles
+    DynListI.H
+    DynList.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef DynList_H
+#define DynList_H
+
+#include "UList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * Forward declaration of template friend fuctions * * * * * * * //
+
+template<class T, label staticSize>
+class DynList;
+
+template<class T, label staticSize>
+Ostream& operator<<
+(
+    Ostream&,
+    const DynList<T, staticSize>&
+);
+template<class T, label staticSize>
+Istream& operator>>
+(
+    Istream&,
+    DynList<T, staticSize>&
+);
+
+
+/*---------------------------------------------------------------------------*\
+                           Class DynList Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class T, label staticSize = 16>
+class DynList
+:
+    public UList<T>
+{
+    // Private data
+        //- statically allocated data (used for short lists)
+        T staticData_[staticSize];
+
+        //- Number of next free element
+        label nextFree_;
+
+    // Private member functions
+        //- allocate list size
+        inline void allocateSize(const label);
+
+        //- check if index is inside the scope (used for debugging only)
+        inline void checkIndex(const label) const;
+
+public:
+
+    // Constructors
+
+        //- Construct null
+        inline DynList();
+
+        //- Construct given size
+        explicit inline DynList(const label);
+
+        //- Construct from given size and defualt value
+        explicit inline DynList(const label, const T&);
+
+        //- Construct from UList. nextFree_ set to size().
+        explicit inline DynList(const UList<T>&);
+
+        //- Construct from other ListType
+        template<class ListType>
+        inline DynList(const ListType&);
+
+        //- Copy constructor
+        inline DynList(const DynList<T, staticSize>&);
+
+        //- Construct from Istream. nextFree_ set to size().
+        explicit DynList(Istream&);
+
+    // Destructor
+
+        inline ~DynList();
+
+
+    // Member Functions
+
+        // Access
+
+            //- Size of the active part of the list.
+            //- Direct over-ride of list size member function
+            inline label size() const;
+
+            //- Number of bytes used by the active part of the list
+            //- Direct over-ride of list byteSize member function
+            inline label byteSize() const;
+
+
+        // Edit
+
+            //- Reset size of List.
+            void setSize(const label);
+
+            //- Clear the list, i.e. set next free to zero.
+            //  Allocated size does not change
+            void clear();
+
+            //- Shrink the List<T> to the number of elements used
+            void shrink();
+
+
+    // Member Operators
+
+        //- Append an element at the end of the list
+        inline void append(const T& e);
+
+        //- Append an element at the end of the list if it is not yet
+        //- present in the list (takes linear time)
+        inline void appendIfNotIn(const T& e);
+
+        //- check if the element is in the list (takes linear time)
+        inline bool contains(const T& e) const;
+        inline label containsAtPosition(const T& e) const;
+
+        //- return a const reference to the last element
+        inline const T& lastElement() const;
+
+        //- Return and remove the last element
+        inline T removeLastElement();
+        inline T removeElement(const label i);
+
+        //- return a refence to the element. Resize the list if necessary
+        inline T& newElmt(const label);
+
+        //- Return non-const access to an element,
+        //-  resizing the list if necessary
+        inline T& operator()(const label);
+
+        //- return access to an element
+        inline const T& operator[](const label) const;
+        inline T& operator[](const label);
+
+        //- return forward and reverse circular indices
+        inline label fcIndex(const label index, const label offset = 1) const;
+        inline label rcIndex(const label index, const label offset = 1) const;
+
+        //- return forward and reverse circular elements
+        inline const T& fcElement
+        (
+            const label index,
+            const label offset = 1
+        ) const;
+
+        inline const T& rcElement
+        (
+            const label index,
+            const label offset = 1
+        ) const;
+
+        //- Assignment of all entries to the given value
+        inline void operator=(const T&);
+
+        //- Copy of another list
+        inline void operator=(const DynList<T, staticSize>&);
+
+        //- Copy of another list type
+        template<class ListType>
+        inline void operator=(const ListType&);
+
+
+    // IOstream operators
+
+        // Write DynList to Ostream.
+        friend Ostream& operator<< <T, staticSize>
+        (
+            Ostream&,
+            const DynList<T, staticSize>&
+        );
+
+        //- Read from Istream, discarding contents of existing DynList.
+        friend Istream& operator>> <T, staticSize>
+        (
+            Istream&,
+            DynList<T, staticSize>&
+        );
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "DynListI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "DynList.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/DynList/DynListI.H

@@ -0,0 +1,405 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::allocateSize(const label s)
+{
+    if( s > UList<T>::size()  )
+    {
+        T* newData = new T[s];
+
+        for(label i=0;i<nextFree_;++i)
+            newData[i] = this->operator[](i);
+
+        T* data = UList<T>::begin();
+        if( data && (data != staticData_) )
+            delete [] data;
+
+        //UList<T>::reset(newData, s);
+        this->UList<T>::operator=(UList<T>(newData, s));
+    }
+    else if( (s > staticSize) && (s < UList<T>::size()) )
+    {
+        T* newData = new T[s];
+
+        for(label i=0;i<s;++i)
+            newData[i] = this->operator[](i);
+
+        T* data = UList<T>::begin();
+        delete [] data;
+
+        //UList<T>::reset(newData, s);
+        this->UList<T>::operator=(UList<T>(newData, s));
+    }
+    else if( (s <= staticSize) && (UList<T>::size() > staticSize) )
+    {
+        for(label i=0;i<s;++i)
+            staticData_[i] = UList<T>::operator[](i);
+
+        T* data = UList<T>::begin();
+        if( data && (data != staticData_) )
+            delete [] data;
+
+        //UList<T>::reset(staticData_, staticSize);
+        this->UList<T>::operator=(UList<T>(staticData_, staticSize));
+    }
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::checkIndex(const label i) const
+{
+    if( (i < 0) || (i >= nextFree_) )
+    {
+        FatalErrorIn
+        (
+            "void Foam::DynList<T, label, Offset>::"
+            "checkIndex(const label i) const"
+        ) << "Index " << i << " is not in range " << 0
+            << " and " << nextFree_ << abort(FatalError);
+    }
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+//- Construct null
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::DynList()
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{}
+
+
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::DynList(const label s)
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{
+    setSize(s);
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::DynList(const label s, const T& val)
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{
+    setSize(s);
+
+    for(label i=0;i<s;++i)
+        this->operator[](i) = val;
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::DynList(const UList<T>& ul)
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{
+    setSize(ul.size());
+
+    forAll(ul, i)
+        this->operator[](i) = ul[i];
+}
+
+template<class T, Foam::label staticSize>
+template<class ListType>
+inline Foam::DynList<T, staticSize>::DynList(const ListType& l)
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{
+    setSize(l.size());
+    for(label i=0;i<nextFree_;++i)
+        this->operator[](i) = l[i];
+}
+
+//- Copy construct
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::DynList
+(
+    const DynList<T, staticSize>& dl
+)
+:
+    UList<T>(staticData_, staticSize),
+    nextFree_(0)
+{
+    setSize(dl.size());
+    for(label i=0;i<nextFree_;++i)
+        this->operator[](i) = dl[i];
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::DynList<T, staticSize>::~DynList()
+{
+    allocateSize(0);
+    //UList<T>::reset(NULL, 0);
+}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+template<class T, Foam::label staticSize>
+inline Foam::label Foam::DynList<T, staticSize>::size() const
+{
+    return nextFree_;
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::label Foam::DynList<T, staticSize>::byteSize() const
+{
+    if( !contiguous<T>() )
+    {
+        FatalErrorIn("DynList<T>::byteSize()")
+            << "Cannot return the binary size of a list of "
+               "non-primitive elements"
+            << abort(FatalError);
+    }
+
+    return nextFree_*sizeof(T);
+
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::setSize(const label s)
+{
+    allocateSize(s);
+    nextFree_ = s;
+}
+
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::clear()
+{
+    nextFree_ = 0;
+}
+
+
+template<class T, Foam::label staticSize>
+void Foam::DynList<T, staticSize>::shrink()
+{
+    allocateSize(nextFree_);
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::append(const T& e)
+{
+    if( nextFree_ >= UList<T>::size() )
+    {
+        const label newSize = 2*UList<T>::size()+2;
+        allocateSize(newSize);
+    }
+
+    UList<T>::operator[](nextFree_++) = e;
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::appendIfNotIn(const T& e)
+{
+    if( !contains(e) )
+         append(e);
+}
+
+template<class T, Foam::label staticSize>
+inline bool Foam::DynList<T, staticSize>::contains(const T& e) const
+{
+    for(label i=0;i<nextFree_;++i)
+    {
+        if( UList<T>::operator[](i) == e )
+            return true;
+    }
+
+    return false;
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::label Foam::DynList<T, staticSize>::containsAtPosition
+(
+    const T& e
+) const
+{
+    for(label i=0;i<nextFree_;++i)
+    {
+        if( UList<T>::operator[](i) == e )
+            return i;
+    }
+
+    return -1;
+}
+
+template<class T, Foam::label staticSize>
+inline const T& Foam::DynList<T, staticSize>::lastElement() const
+{
+    return this->operator[](nextFree_-1);
+}
+
+template<class T, Foam::label staticSize>
+inline T Foam::DynList<T, staticSize>::removeLastElement()
+{
+    if( nextFree_ == 0 )
+    {
+        FatalErrorIn
+        (
+            "void Foam::DynList<T, staticSize>::remove()"
+        )   << "List is empty" << abort(FatalError);
+    }
+
+    T el = UList<T>::operator[](--nextFree_);
+    return el;
+}
+
+template<class T, Foam::label staticSize>
+inline T Foam::DynList<T, staticSize>::removeElement(const label i)
+{
+    if( nextFree_ == 0 )
+    {
+        FatalErrorIn
+        (
+            "void Foam::DynList<T, staticSize>::remove()"
+        )   << "List is empty" << abort(FatalError);
+    }
+
+    T el = this->operator[](i);
+    this->operator[](i) = this->operator[](nextFree_-1);
+    --nextFree_;
+
+    return el;
+}
+
+template<class T, Foam::label staticSize>
+inline T& Foam::DynList<T, staticSize>::newElmt(const label i)
+{
+    return this->operator()(i);
+}
+
+// * * * * * * * * * * * * * * * Member Operators  * * * * * * * * * * * * * //
+
+template<class T, Foam::label staticSize>
+inline T& Foam::DynList<T, staticSize>::operator()(const label i)
+{
+    nextFree_ = Foam::max(nextFree_, i + 1);
+
+    if( nextFree_ >= UList<T>::size() )
+    {
+        allocateSize(2 * nextFree_+1);
+    }
+
+    return this->operator[](i);
+}
+
+template<class T, Foam::label staticSize>
+inline const T& Foam::DynList<T, staticSize>::operator[](const label i) const
+{
+    # ifdef FULLDEBUG
+    checkIndex(i);
+    # endif
+
+    return UList<T>::operator[](i);
+}
+
+template<class T, Foam::label staticSize>
+inline T& Foam::DynList<T, staticSize>::operator[](const label i)
+{
+    # ifdef FULLDEBUG
+    checkIndex(i);
+    # endif
+
+    return UList<T>::operator[](i);
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::label Foam::DynList<T, staticSize>::fcIndex
+(
+    const label index,
+    const label offset
+) const
+{
+    return (index + offset) % nextFree_;
+}
+
+template<class T, Foam::label staticSize>
+inline Foam::label Foam::DynList<T, staticSize>::rcIndex
+(
+    const label index,
+    const label offset
+) const
+{
+    return (index + nextFree_ - offset) % nextFree_;
+}
+
+template<class T, Foam::label staticSize>
+inline const T& Foam::DynList<T, staticSize>::fcElement
+(
+    const label index,
+    const label offset
+) const
+{
+    return operator[](fcIndex(index, offset));
+}
+
+template<class T, Foam::label staticSize>
+inline const T& Foam::DynList<T, staticSize>::rcElement
+(
+    const label index,
+    const label offset
+) const
+{
+    return operator[](rcIndex(index, offset));
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::operator=(const T& t)
+{
+    UList<T>::operator=(t);
+}
+
+template<class T, Foam::label staticSize>
+inline void Foam::DynList<T, staticSize>::operator=
+(
+    const DynList<T, staticSize>& dl
+)
+{
+    allocateSize(dl.size());
+    nextFree_ = dl.size();
+
+    for(label i=0;i<nextFree_;++i)
+        this->operator[](i) = dl[i];
+}
+
+template<class T, Foam::label staticSize>
+template<class ListType>
+inline void Foam::DynList<T, staticSize>::operator=(const ListType& l)
+{
+    allocateSize(l.size());
+    nextFree_ = l.size();
+
+    for(label i=0;i<nextFree_;++i)
+        this->operator[](i) = l[i];
+}
+
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/FRWGraph/FRWGraph.C

@@ -0,0 +1,71 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "FRWGraph.H"
+
+// * * * * * * * * * * * * * * * IOstream Operators  * * * * * * * * * * * * //
+
+template<class T, Foam::label width>
+Foam::Ostream& Foam::operator<<
+(
+    Foam::Ostream& os,
+    const Foam::FRWGraph<T, width>& DL
+)
+{
+    os << DL.size() << "(" << endl;
+    for(register label i=0;i<DL.size();++i)
+    {
+        os << width << "(";
+        for(label j=0;j<width;++j)
+            os << DL(i, j) << " " << endl;
+        os << ")" << endl;
+    }
+    os << ")";
+    return os;
+}
+
+/*
+template<class T, Foam::label width>
+Foam::Istream& Foam::operator>>
+(
+    Foam::Istream& is,
+    Foam::FRWGraph<T, width>& DL
+)
+{
+    label size;
+    T e;
+    is >> size;
+    DL.setSize(size);
+    for(IndexType i=0;i<size;++i)
+    {
+        is >> e;
+        DL[i] = e;
+    }
+
+    return is;
+}
+*/
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/FRWGraph/FRWGraph.H

@@ -0,0 +1,183 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    FRWGraph
+
+Description
+    This class is an implementation of a graph with the fixed row width.
+    The implementation is memory efficient.
+
+SourceFiles
+    FRWGraphI.H
+    FRWGraph.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef FRWGraph_H
+#define FRWGraph_H
+
+#include "label.H"
+#include "LongList.H"
+#include "FixedList.H"
+#include "bool.H"
+#include "error.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * Forward declaration of template friend fuctions * * * * * * * //
+
+template<class T, label width>
+class FRWGraph;
+
+template<class T, label width>
+Ostream& operator<<
+(
+    Ostream&,
+    const FRWGraph<T, width>&
+);
+template<class T, label width>
+Istream& operator>>
+(
+    Istream&,
+    FRWGraph<T, width>&
+);
+
+/*---------------------------------------------------------------------------*\
+                           Class FRWGraph Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class T, label width>
+class FRWGraph
+{
+    // Private data
+        //- list containing the data
+        LongList<T> data_;
+
+        //- number of rows
+        label nRows_;
+
+    // Private member functions
+        //- check index
+        void checkIndex(const label i, const label j) const;
+
+public:
+
+    // Constructors
+
+        //- Construct null
+        inline FRWGraph();
+
+        //- Construct given size
+        explicit inline FRWGraph(const label size);
+
+        //- Construct to given size and initialize
+        explicit inline FRWGraph(const label size, const T& t);
+
+        //- Copy contructor
+        inline FRWGraph(const FRWGraph<T, width>&);
+
+    // Destructor
+
+        inline ~FRWGraph();
+
+    // Member Functions
+
+        // Access
+
+            //- Returns the number of rows
+            inline label size() const;
+
+            //- Returns the size of a given row (obsolete)
+            inline label sizeOfRow(const label rowI) const;
+
+        // Edit
+
+            //- Reset the number of rows
+            void setSize(const label);
+
+            //- Clear the graph
+            //  Allocated size does not change
+            void clear();
+
+    // Member Operators
+
+        //- Append a row at the end of the graph
+        inline void appendFixedList(const FixedList<T, width>& l);
+
+        //- Set row with the list
+        inline void setRow(const label rowI, const FixedList<T, width>& l);
+
+        //- check if the element is in the given row (takes linear time)
+        inline bool contains(const label rowI, const T& e) const;
+        inline label containsAtPosition(const label rowI, const T& e) const;
+
+        //- get and set operators
+        inline const T& operator()(const label i, const label j) const;
+        inline T& operator()(const label i, const label j);
+
+        //- Assignment operator
+        inline void operator=(const FRWGraph<T, width>&);
+
+
+    // IOstream operators
+
+        // Write FRWGraph to Ostream.
+        friend Ostream& operator<< <T, width>
+        (
+            Ostream&,
+            const FRWGraph<T, width>&
+        );
+
+        //- Read from Istream, discarding contents of existing FRWGraph.
+/*        friend Istream& operator>> <T, width>
+        (
+            Istream&,
+            FRWGraph<T, width>&
+        );
+*/
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "FRWGraphI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "FRWGraph.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/FRWGraph/FRWGraphI.H

@@ -0,0 +1,223 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+template<class T, Foam::label width>
+void Foam::FRWGraph<T, width>::checkIndex(const label i, const label j) const
+{
+    if( (i < 0) || (i >= nRows_) )
+    {
+        FatalErrorIn
+        (
+            "void Foam::FRWGraph<T,width>::"
+            "checkIndex(const label i, const label j) const"
+        ) << "Row index " << Foam::label(i)
+            << " is not in range " << Foam::label(0)
+            << " and " << nRows_ << abort(FatalError);
+    }
+    
+    if( (j < 0) || (j >= width) )
+        FatalErrorIn
+        (
+            "void Foam::FRWGraph<T,width>::"
+            "checkIndex(label const i) const"
+        ) << "Column index " << Foam::label(j)
+            << " is not in range " << Foam::label(0)
+            << " and " << width << abort(FatalError);
+}
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+//- Construct null
+template<class T, Foam::label width>
+inline Foam::FRWGraph<T,width>::FRWGraph()
+:
+    data_(),
+    nRows_(0)
+{
+}
+
+//- Construct given size
+template<class T, Foam::label width>
+inline Foam::FRWGraph<T,width>::FRWGraph
+(
+    const label s
+)
+:
+    data_(s * width),
+    nRows_(s)
+{
+}
+
+
+//- Construct given size
+template<class T, Foam::label width>
+inline Foam::FRWGraph<T,width>::FRWGraph
+(
+    const label s,
+    const T& t
+)
+:
+    data_(s * width, t),
+    nRows_(s)
+{
+}
+
+template<class T, Foam::label width>
+inline Foam::FRWGraph<T,width>::FRWGraph
+(
+    const FRWGraph<T,width>& ol
+)
+:
+    data_(ol.data_),
+    nRows_(ol.nRows_)
+{
+}
+
+template<class T, Foam::label width>
+inline Foam::FRWGraph<T,width>::~FRWGraph()
+{
+}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+template<class T, Foam::label width>
+inline Foam::label Foam::FRWGraph<T,width>::size() const
+{
+    return nRows_;
+}
+
+template<class T, Foam::label width>
+inline Foam::label Foam::FRWGraph<T,width>::sizeOfRow(const label rowI) const
+{
+    return width;
+}
+
+template<class T, Foam::label width>
+inline void Foam::FRWGraph<T,width>::setSize(const label i)
+{
+    data_.setSize(i * width);
+    nRows_ = i;
+}
+
+template<class T, Foam::label width>
+inline void Foam::FRWGraph<T,width>::clear()
+{
+    data_.clear();
+    nRows_ = 0;
+}
+
+template<class T, Foam::label width>
+inline void Foam::FRWGraph<T,width>::appendFixedList
+(
+    const FixedList<T, width>& l
+)
+{
+    forAll(l, elI)
+        data_.append(l[elI]);
+    ++nRows_;
+}
+
+template<class T, Foam::label width>
+inline void Foam::FRWGraph<T,width>::setRow
+(
+    const label rowI,
+    const FixedList<T, width>& l
+)
+{
+    const label start = rowI * width;
+    forAll(l, elI)
+        data_[start+elI] = l[elI];
+}
+
+template<class T, Foam::label width>
+inline bool Foam::FRWGraph<T,width>::contains
+(
+    const label rowI,
+    const T& e
+) const
+{
+    const label start = rowI * width;
+    for(register label i=0;i<width;++i)
+        if( data_[start+i] == e )
+            return true;
+    
+    return false;
+}
+
+template<class T, Foam::label width>
+inline Foam::label Foam::FRWGraph<T,width>::containsAtPosition
+(
+    const label rowI,
+    const T& e
+) const
+{
+    const label start = rowI * width;
+    for(register label i=0;i<width;++i)
+        if( data_[start+i] == e )
+            return i;
+    
+    return -1;
+}
+
+// * * * * * * * * * * * * * * * Member Operators  * * * * * * * * * * * * * //
+template<class T, Foam::label width>
+inline const T& Foam::FRWGraph<T,width>::operator()
+(
+    const label i,
+    const label j
+) const
+{
+    #ifdef FULLDEBUG
+    checkIndex(i, j);
+    #endif
+        
+    return data_[i * width + j];
+}
+
+template<class T, Foam::label width>
+inline T& Foam::FRWGraph<T,width>::operator()
+(
+    const label i, const label j
+)
+{
+    #ifdef FULLDEBUG
+    checkIndex(i, j);
+    #endif
+        
+    return data_[i * width + j];
+}
+
+template<class T, Foam::label width>
+inline void Foam::FRWGraph<T,width>::operator=
+(
+    const FRWGraph<T, width>& l
+)
+{
+    data_ = l.data_;
+}
+
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Graphs/cellIOGraph.C

@@ -0,0 +1,87 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    An graph of faces which supports automated output.
+
+\*---------------------------------------------------------------------------*/
+
+#include "cellIOGraph.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+cellIOGraph::cellIOGraph(const IOobject& io)
+:
+    regIOobject(io),
+    VRWGraph()
+{}
+
+cellIOGraph::cellIOGraph
+(
+    const IOobject& io,
+    const label size
+)
+:
+    regIOobject(io),
+    VRWGraph(size)
+{}
+
+cellIOGraph::cellIOGraph
+(
+    const IOobject& io,
+    const VRWGraph& g
+)
+:
+    regIOobject(io),
+    VRWGraph(g)
+{}
+
+void cellIOGraph::operator=(const cellIOGraph& rhs)
+{
+    VRWGraph::operator=(rhs);
+}
+
+void cellIOGraph::operator=(const VRWGraph& rhs)
+{
+    VRWGraph::operator=(rhs);
+}
+
+bool cellIOGraph::writeData(Ostream& os) const
+{
+    return (os << *this).good();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+defineTypeNameWithName(cellIOGraph, "cellList");
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Graphs/cellIOGraph.H

@@ -0,0 +1,93 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    cellIOGraph
+
+Description
+    A graph of cells which support automated output
+
+SourceFiles
+    cellIOGraph.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef cellIOGraph_H
+#define cellIOGraph_H
+
+#include "VRWGraph.H"
+#include "regIOobject.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class cellIOGraph Declaration
+\*---------------------------------------------------------------------------*/
+
+class cellIOGraph
+:
+    public regIOobject,
+    public VRWGraph
+{
+
+public:
+
+    //- Runtime type information
+        TypeName("cellIOGraph");
+
+    // Constructors
+
+        //- Construct from IOobject
+        cellIOGraph(const IOobject&);
+
+        //- Construct from IOobject and size of cellIOGraph
+        cellIOGraph(const IOobject&, const label);
+
+        //- Construct from IOobject and a VRWGraph
+        cellIOGraph(const IOobject&, const VRWGraph&);
+
+
+    // Member functions
+
+        bool writeData(Ostream&) const;
+
+
+    // Member operators
+
+        void operator=(const cellIOGraph&);
+        void operator=(const VRWGraph&);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Graphs/faceIOGraph.C

@@ -0,0 +1,87 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    An graph of faces which supports automated output.
+
+\*---------------------------------------------------------------------------*/
+
+#include "faceIOGraph.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+faceIOGraph::faceIOGraph(const IOobject& io)
+:
+    regIOobject(io),
+    VRWGraph()
+{}
+
+faceIOGraph::faceIOGraph
+(
+    const IOobject& io,
+    const label size
+)
+:
+    regIOobject(io),
+    VRWGraph(size)
+{}
+
+faceIOGraph::faceIOGraph
+(
+    const IOobject& io,
+    const VRWGraph& g
+)
+:
+    regIOobject(io),
+    VRWGraph(g)
+{}
+
+void faceIOGraph::operator=(const faceIOGraph& rhs)
+{
+    VRWGraph::operator=(rhs);
+}
+
+void faceIOGraph::operator=(const VRWGraph& rhs)
+{
+    VRWGraph::operator=(rhs);
+}
+
+bool faceIOGraph::writeData(Ostream& os) const
+{
+    return (os << *this).good();
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+defineTypeNameWithName(faceIOGraph, "faceList");
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Graphs/faceIOGraph.H

@@ -0,0 +1,93 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    faceIOGraph
+
+Description
+    A graph of faces which support automated output
+
+SourceFiles
+    faceIOGraph.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef faceIOGraph_H
+#define faceIOGraph_H
+
+#include "VRWGraph.H"
+#include "regIOobject.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class faceIOGraph Declaration
+\*---------------------------------------------------------------------------*/
+
+class faceIOGraph
+:
+    public regIOobject,
+    public VRWGraph
+{
+
+public:
+
+    //- Runtime type information
+        TypeName("faceIOGraph");
+
+    // Constructors
+
+        //- Construct from IOobject
+        faceIOGraph(const IOobject&);
+
+        //- Construct from IOobject and size of faceIOGraph
+        faceIOGraph(const IOobject&, const label);
+
+        //- Construct from IOobject and a VRWGraph
+        faceIOGraph(const IOobject&, const VRWGraph&);
+
+
+    // Member functions
+
+        bool writeData(Ostream&) const;
+
+
+    // Member operators
+
+        void operator=(const faceIOGraph&);
+        void operator=(const VRWGraph&);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IODynList/IODynList.C

@@ -0,0 +1,120 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    An IODynList of a given type is a List of that type which supports automated
+    input and output.
+
+\*---------------------------------------------------------------------------*/
+
+#include "IODynList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+template<class T, class IndexType>
+IODynList<T, IndexType>::IODynList(const IOobject& io)
+:
+    regIOobject(io),
+    DynList<T, IndexType>()
+{
+    if
+    (
+        io.readOpt() == IOobject::MUST_READ
+     || (io.readOpt() == IOobject::READ_IF_PRESENT && headerOk())
+    )
+    {
+        readStream(typeName) >> *this;
+        close();
+    }
+}
+
+
+template<class T, class IndexType>
+IODynList<T, IndexType>::IODynList
+(
+    const IOobject& io,
+    const IndexType size
+)
+:
+    regIOobject(io),
+    DynList<T, IndexType>(size)
+{}
+
+
+template<class T, class IndexType>
+IODynList<T, IndexType>::IODynList
+(
+    const IOobject& io,
+    const DynList<T, IndexType>& list
+)
+:
+    regIOobject(io),
+    DynList<T, IndexType>()
+{
+    if (io.readOpt() == IOobject::READ_IF_PRESENT && headerOk())
+    {
+        readStream(typeName) >> *this;
+        close();
+    }
+    
+    DynList<T, IndexType>::operator=(list);
+}
+
+
+template<class T, class IndexType>
+void IODynList<T, IndexType>::operator=
+(
+    const IODynList<T, IndexType>& rhs
+)
+{
+    DynList<T, IndexType>::operator=(rhs);
+}
+
+
+template<class T, class IndexType>
+void IODynList<T, IndexType>::operator=
+(
+    const DynList<T, IndexType>& rhs
+)
+{
+    DynList<T, IndexType>::operator=(rhs);
+}
+
+
+template<class T, class IndexType>
+bool IODynList<T, IndexType>::writeData(Ostream& os) const
+{
+    return (os << *this).good();
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IODynList/IODynList.H

@@ -0,0 +1,103 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    IODynList
+
+Description
+    An IODynList of a given type is a DynList of that type which supports
+    automated input and output.
+
+SourceFiles
+    IODynList.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef IODynList_H
+#define IODynList_H
+
+#include "DynList.H"
+#include "regIOobject.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class IODynList Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class T, class IndexType=label>
+class IODynList
+:
+    public regIOobject,
+    public DynList<T, IndexType>
+{
+
+public:
+
+    //- Runtime type information
+    TypeName("DynList");
+
+
+    // Constructors
+
+        //- Construct from IOobject
+        IODynList(const IOobject&);
+
+        //- Construct from IOobject and size of IODynList
+        IODynList(const IOobject&, const IndexType);
+
+        //- Construct from IOobject and a List
+        IODynList(const IOobject&, const DynList<T, IndexType>&);
+
+
+    // Member functions
+
+        bool writeData(Ostream&) const;
+
+
+    // Member operators
+
+        void operator=(const IODynList<T, IndexType>&);
+
+        void operator=(const DynList<T, IndexType>&);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "IODynList.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IOLongList/IOLongList.C

@@ -0,0 +1,120 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    An IOLongList of a given type is a list which supports automated
+    input and output.
+
+\*---------------------------------------------------------------------------*/
+
+#include "IOLongList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+template<class T, label Offset>
+IOLongList<T, Offset>::IOLongList(const IOobject& io)
+:
+    regIOobject(io),
+    LongList<T, Offset>()
+{
+    if
+    (
+        io.readOpt() == IOobject::MUST_READ
+     || (io.readOpt() == IOobject::READ_IF_PRESENT && headerOk())
+    )
+    {
+        readStream(typeName) >> *this;
+        close();
+    }
+}
+
+
+template<class T, label Offset>
+IOLongList<T, Offset>::IOLongList
+(
+    const IOobject& io,
+    const label size
+)
+:
+    regIOobject(io),
+    LongList<T, Offset>(size)
+{}
+
+
+template<class T, label Offset>
+IOLongList<T, Offset>::IOLongList
+(
+    const IOobject& io,
+    const LongList<T, Offset>& list
+)
+:
+    regIOobject(io),
+    LongList<T, Offset>()
+{
+    if (io.readOpt() == IOobject::READ_IF_PRESENT && headerOk())
+    {
+        readStream(typeName) >> *this;
+        close();
+    }
+    
+    LongList<T, Offset>::operator=(list);
+}
+
+
+template<class T, label Offset>
+void IOLongList<T, Offset>::operator=
+(
+    const IOLongList<T, Offset>& rhs
+)
+{
+    LongList<T, Offset>::operator=(rhs);
+}
+
+
+template<class T, label Offset>
+void IOLongList<T, Offset>::operator=
+(
+    const LongList<T, Offset>& rhs
+)
+{
+    LongList<T, Offset>::operator=(rhs);
+}
+
+
+template<class T, label Offset>
+bool IOLongList<T, Offset>::writeData(Ostream& os) const
+{
+    return (os << *this).good();
+}
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IOLongList/IOLongList.H

@@ -0,0 +1,103 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    IOLongList
+
+Description
+    An IOLongList of a given type is a List of that type which supports
+    automated input and output.
+
+SourceFiles
+    IOLongList.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef IOLongList_H
+#define IOLongList_H
+
+#include "LongList.H"
+#include "regIOobject.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                           Class IOLongList Declaration
+\*---------------------------------------------------------------------------*/
+
+template<class T, label Offset = 19>
+class IOLongList
+:
+    public regIOobject,
+    public LongList<T, Offset>
+{
+
+public:
+
+    //- Runtime type information
+    TypeName("LongList");
+
+
+    // Constructors
+
+        //- Construct from IOobject
+        IOLongList(const IOobject&);
+
+        //- Construct from IOobject and size of IOLongList
+        IOLongList(const IOobject&, const label);
+
+        //- Construct from IOobject and a List
+        IOLongList(const IOobject&, const LongList<T, Offset>&);
+
+
+    // Member functions
+
+        bool writeData(Ostream&) const;
+
+
+    // Member operators
+
+        void operator=(const IOLongList<T, Offset>&);
+
+        void operator=(const LongList<T, Offset>&);
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#ifdef NoRepository
+#   include "IOLongList.C"
+#endif
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IOLongList/IOLongListInstances.C

@@ -0,0 +1,48 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Declaration of IOLongList ClassNames for IOLists that do not have .C files.
+
+\*---------------------------------------------------------------------------*/
+
+#include "IOLongListInstances.H"
+#include "addToRunTimeSelectionTable.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    defineCompoundTypeName(IOLongList<label>, labelIOListPMG);
+    defineCompoundTypeName(IOLongList<point>, pointIOFieldPMG);
+    //defineCompoundTypeName(IOLongList<face>, faceIOListPMG);
+    //defineCompoundTypeName(IOLongList<cell>, cellIOListPMG);
+    //addCompoundToRunTimeSelectionTable(IOLongList<label>, labelIOLongList);
+
+    defineTemplateTypeNameAndDebugWithName(labelIOListPMG, "labelList", 0);
+    defineTemplateTypeNameAndDebugWithName(pointIOFieldPMG, "vectorField", 0);
+    //defineTemplateTypeNameAndDebugWithName(faceIOListPMG, "faceList", 0);
+    //defineTemplateTypeNameAndDebugWithName(cellIOListPMG, "cellList", 0);
+}
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/IOLongList/IOLongListInstances.H

@@ -0,0 +1,54 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Type
+    IOLongList
+
+Description
+    Definitions of output classes for mesh data
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef IOLongListInstances_H
+#define IOLongListInstances_H
+
+#include "face.H"
+#include "cell.H"
+#include "point.H"
+#include "IOLongList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    typedef IOLongList<point> pointIOFieldPMG;
+    typedef IOLongList<face> faceIOListPMG;
+    typedef IOLongList<cell> cellIOListPMG;
+    typedef IOLongList<label> labelIOListPMG;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/cellListPMG.H

@@ -0,0 +1,110 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    cellListPMG
+
+Description
+    This is a container with additional size to prevent re-allocation
+    every time it is resized
+
+SourceFiles
+    
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef cellListPMG_H
+#define cellListPMG_H
+
+#include "cellList.H"
+#include "Istream.H"
+#include "Ostream.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+class cellListPMG
+    : public cellList
+{
+    // Private data
+        //- number of used elements
+        label nElmts_;
+    
+    // Disallow bitwise assignment
+        void operator=(const cellListPMG&);
+    
+        cellListPMG(const cellListPMG&);
+    
+    // Disallow transfer from cellList
+        void transfer(cellList&);
+    
+public:
+    
+    // Constructors
+        //- null construct
+        inline cellListPMG();
+
+    // Destructor
+        inline ~cellListPMG();
+            
+    // Member functions
+        //- return the number of used elements
+        inline label size() const;
+
+        //- set the number of used elements
+        inline void setSize(const label nElmts);
+
+        //- set the size to zero
+        inline void clear();
+
+        //- add a cell at the end of the list
+        inline void append(const cell&);
+        
+        //- return an element with bound checking
+        inline cell& newElmt(const label);
+
+    // Member operators
+        inline void operator=(const cellList&);
+    
+        friend inline Ostream& operator<<(Ostream&, const cellListPMG&);
+        
+        friend inline Istream& operator>>(Istream&, cellListPMG&);
+};
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "cellListPMGI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/cellListPMGI.H

@@ -0,0 +1,131 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+
+\*---------------------------------------------------------------------------*/
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "SubList.H"
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Constructors
+
+inline cellListPMG::cellListPMG()
+:
+    cellList(),
+    nElmts_(0)
+{
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Destructor
+
+inline cellListPMG::~cellListPMG()
+{
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+            
+inline label cellListPMG::size() const
+{
+    return nElmts_;
+}
+
+inline void cellListPMG::setSize(const label nElmts)
+{
+    if( nElmts >= cellList::size() )
+    {
+        if( cellList::size() != 0 )
+        {
+            Info << "Resizing cells!" << endl;
+            cellList copy(label(1.5*nElmts));
+            for(label i=0;i<nElmts_;++i)
+                copy[i].transfer(this->operator[](i));
+            
+            cellList::transfer(copy);
+        }
+        else
+        {
+            cellList::setSize(label(1.5*nElmts));
+        }
+    }
+
+    nElmts_ = nElmts;
+}
+
+inline void cellListPMG::clear()
+{
+    nElmts_ = 0;
+}
+
+inline void cellListPMG::append(const cell& c)
+{
+    const label i = nElmts_;
+    setSize(i+1);
+    this->operator[](i) = c;
+}
+
+inline cell& cellListPMG::newElmt(const label cI)
+{
+    setSize(cI+1);
+    return this->operator[](cI);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+inline void cellListPMG::operator=(const cellList& cls)
+{
+    setSize(cls.size());
+    forAll(cls, cI)
+        this->operator[](cI) = cls[cI];
+}
+    
+inline Ostream& operator<<(Ostream& os, const cellListPMG& cls)
+{
+    SubList<cell> c(cls, cls.nElmts_, 0);
+    
+    os << c;
+    return os;
+}
+
+inline Istream& operator>>(Istream& is, cellListPMG& cls)
+{
+    cellList& cells = static_cast<cellList&>(cls);
+    is >> cells;
+    cls.nElmts_  = cells.size();
+    
+    return is;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/edgeLongList.H

@@ -0,0 +1,57 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    edgeLongList
+
+Description
+    This is a typedef for LongList<edge>
+
+SourceFiles
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef edgeLongList_H
+#define edgeLongList_H
+
+#include "edge.H"
+#include "LongList.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+typedef LongList<edge> edgeLongList;
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/faceListPMG.C

@@ -0,0 +1,39 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+    Declaration of IODynListHP ClassNames for IOLists that do not have .C files.
+
+\*---------------------------------------------------------------------------*/
+
+#include "faceListPMG.H"
+#include "addToRunTimeSelectionTable.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+defineTypeNameWithName(faceListPMG, "faceList");
+}
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/faceListPMG.H

@@ -0,0 +1,123 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    faceListPMG
+
+Description
+    This is a container with additional size to prevent re-allocation
+    every time it is resized
+
+SourceFiles
+
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef faceListPMG_H
+#define faceListPMG_H
+
+#include "regIOobject.H"
+#include "faceList.H"
+#include "Istream.H"
+#include "Ostream.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+class faceListPMG
+:   public regIOobject,
+    public faceList
+{
+    // Private data
+        //- number of used elements
+        label nElmts_;
+
+    // Disallow bitwise assignment
+        void operator=(const faceListPMG&);
+
+        faceListPMG(const faceListPMG&);
+
+    // Disallow transfer from faceList
+        void transfer(faceList&);
+
+public:
+
+        TypeName("faceList");
+
+    // Constructors
+        //- construct from IOobject
+        inline faceListPMG(const IOobject&);
+
+        //- construct from IOobject and size
+        inline faceListPMG(const IOobject&, const label);
+
+        //- construct from IOobject and faceList
+        inline faceListPMG(const IOobject&, const faceList&);
+
+    // Destructor
+        inline ~faceListPMG();
+
+    // Member functions
+        //- return the number of used elements
+        inline label size() const;
+
+        //- set the number of used elements
+        inline void setSize(const label nElmts);
+
+        //- set the size to zero
+        inline void clear();
+
+        //- add a face at the end of the list
+        inline void append(const face&);
+
+        //- return an element with bound checking
+        inline face& newElmt(const label);
+
+        //- read/write the list onto disk
+        inline bool writeData(Ostream&) const;
+
+    // Member operators
+        inline void operator=(const faceList&);
+
+        friend inline Ostream& operator<<(Ostream&, const faceListPMG&);
+
+        friend inline Istream& operator>>(Istream&, faceListPMG&);
+};
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "faceListPMGI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/mesh/cfMesh/meshLibrary/utilities/containers/Lists/faceListPMGI.H

@@ -0,0 +1,153 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | cfMesh: A library for mesh generation
+   \\    /   O peration     |
+    \\  /    A nd           | Author: Franjo Juretic (franjo.juretic@c-fields.com)
+     \\/     M anipulation  | Copyright (C) Creative Fields, Ltd.
+-------------------------------------------------------------------------------
+License
+    This file is part of cfMesh.
+
+    cfMesh is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 3 of the License, or (at your
+    option) any later version.
+
+    cfMesh is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with cfMesh.  If not, see <http://www.gnu.org/licenses/>.
+
+Description
+
+
+\*---------------------------------------------------------------------------*/
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#include "SubList.H"
+
+namespace Foam
+{
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Constructors
+
+inline faceListPMG::faceListPMG(const IOobject& io)
+:
+    regIOobject(io),
+    faceList(readStream(typeName)),
+    nElmts_(faceList::size())
+{
+}
+
+inline faceListPMG::faceListPMG(const IOobject& io, const label s)
+:
+    regIOobject(io),
+    faceList(s),
+    nElmts_(s)
+{
+}
+
+inline faceListPMG::faceListPMG(const IOobject& io, const faceList& fcs)
+:
+    regIOobject(io),
+    faceList(fcs),
+    nElmts_(fcs.size())
+{
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// Destructor
+
+inline faceListPMG::~faceListPMG()
+{
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+            
+inline label faceListPMG::size() const
+{
+    return nElmts_;
+}
+
+inline void faceListPMG::setSize(const label nElmts)
+{
+    if( nElmts >= faceList::size() )
+    {
+        if( faceList::size() != 0 )
+        {
+            Info << "Resizing faces!" << endl;
+            faceList copy(label(1.5*nElmts));
+            for(label i=0;i<nElmts_;++i)
+                copy[i].transfer(this->operator[](i));
+            
+            faceList::transfer(copy);
+        }
+        else
+        {
+            faceList::setSize(label(1.5*nElmts));
+        }
+    }
+
+    nElmts_ = nElmts;
+}
+
+inline void faceListPMG::clear()
+{
+    nElmts_ = 0;
+}
+
+inline void faceListPMG::append(const face& f)
+{
+    const label i = nElmts_;
+    setSize(i+1);
+    this->operator[](i) = f;
+}
+
+inline face& faceListPMG::newElmt(const label fI)
+{
+    setSize(fI+1);
+    return this->operator[](fI);
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+inline bool faceListPMG::writeData(Ostream& os) const
+{
+    return (os << *this).good();
+}
+
+inline void faceListPMG::operator=(const faceList& fcs)
+{
+    setSize(fcs.size());
+    forAll(fcs, fI)
+        this->operator[](fI) = fcs[fI];
+}
+    
+inline Ostream& operator<<(Ostream& os, const faceListPMG& fcs)
+{
+    SubList<face> f(fcs, fcs.nElmts_, 0);
+    
+    os << f;
+    return os;
+}
+
+inline Istream& operator>>(Istream& is, faceListPMG& fcs)
+{
+    faceList& faces = static_cast<faceList&>(fcs);
+    is >> faces;
+    fcs.nElmts_  = faces.size();
+    
+    return is;
+}
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //