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FEATURE: Porting fixes and GGI bug fix. Author: Hrvoje Jasak. Merge: Hrvoje Jasak.

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Hrvoje Jasak 2015-08-18 15:18:44 +01:00
commit 8178326462
10 changed files with 43 additions and 18 deletions
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2
ThirdParty/AllMake.stage2 vendored
View file

@ -102,7 +102,7 @@ then
[ ! -z "$WM_THIRD_PARTY_USE_OPENMPI_188" ] && {
echo "Building openmpi 1.8.8"
( rpm_make -p openmpi-1.8.8 -s openmpi-1.8.8.spec -u http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.8.tar.gz \
-f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs"')
-f --define '_configureAdditionalArgs "$WM_THIRD_PARTY_USE_OPENMPI_188_ConfigureAdditionalArgs"')
}
else
echo "Using system installed OpenMPI"

28
applications/utilities/parallelProcessing/decomposeSets/decomposeSets.C
View file

@ -45,6 +45,7 @@ int main(int argc, char *argv[])
// Add option to write empty sets
argList::validOptions.insert("writeEmptySets", "");
argList::validOptions.insert("liveObjectsOnly", "");
# include "setRootCase.H"
# include "createTime.H"
@ -52,6 +53,7 @@ int main(int argc, char *argv[])
Info<< "Time = " << runTime.timeName() << endl;
bool writeEmptySets = args.optionFound("writeEmptySets");
bool liveObjectsOnly = args.optionFound("liveObjectsOnly");
// Determine the processor count directly
label nProcs = 0;
@ -128,10 +130,18 @@ int main(int argc, char *argv[])
{
const labelList& addr = procMeshes.pointProcAddressing()[procI];
const label nProcPoints = procMeshes.meshes()[procI].nPoints();
labelHashSet procSet;
forAll (addr, pointI)
{
// Skip list when nPoints is reached
if (liveObjectsOnly && pointI >= nProcPoints)
{
break;
}
if (set.found(addr[pointI]))
{
procSet.insert(pointI);
@ -143,14 +153,14 @@ int main(int argc, char *argv[])
// Set created, write it
Info<< "Writing point set " << set.name()
<< " on processor " << procI << endl;
pointSet cs
pointSet ps
(
procMeshes.meshes()[procI],
set.name(),
procSet,
IOobject::NO_WRITE
);
cs.write();
ps.write();
}
}
}
@ -172,10 +182,18 @@ int main(int argc, char *argv[])
{
const labelList& addr = procMeshes.faceProcAddressing()[procI];
const label nProcFaces = procMeshes.meshes()[procI].nFaces();
labelHashSet procSet;
forAll (addr, faceI)
{
// Skip list when nPoints is reached
if (liveObjectsOnly && faceI >= nProcFaces)
{
break;
}
// Note faceProcAddressing peculiarity:
// change of sign and offset. HJ, 7/Mar/2011
if (set.found(mag(addr[faceI]) - 1))
@ -189,14 +207,14 @@ int main(int argc, char *argv[])
// Set created, write it
Info<< "Writing face set " << set.name()
<< " on processor " << procI << endl;
faceSet cs
faceSet fs
(
procMeshes.meshes()[procI],
set.name(),
procSet,
IOobject::NO_WRITE
);
cs.write();
fs.write();
}
}
}
@ -218,6 +236,8 @@ int main(int argc, char *argv[])
{
const labelList& addr = procMeshes.cellProcAddressing()[procI];
// There are no retired cells: no special handling required
labelHashSet procSet;
forAll (addr, cellI)

8
doc/buildInstructions/Windows/README.txt
View file

@ -157,7 +157,7 @@ Version: 1.11.4-1 (or above)
URL : http://downloads.sourceforge.net/gnuwin32/wget-1.11.4-1-bin.zip, http://downloads.sourceforge.net/gnuwin32/wget-1.11.4-1-dep.zip, http://downloads.sourceforge.net/gnuwin32/wget-1.11.4-1-doc.zip
For : Automatically downloading files from internet (eg. for use in automated build scripts)
git clone --branch nameClashesForWinPort git://git.code.sf.net/u/dominikchrist/foam-extend-3.1-dc foam-extend-3.1-win
git clone --branch nextRelease git://git.code.sf.net/p/openfoam-extend/foam-extend-3.1
4. EXAMPLE OUTPUT FROM SOUCING etc/bashrc.mingw
@ -199,14 +199,14 @@ Checking versions of installed system tools (based on PATH) ...
Bison: /bin/bison.exe [bison (GNU Bison) 2.4.2]
CMake: /c/Programs/cmake-3.2.3-win32-x86/bin/cmake.exe [cmake version 3.2.3]
Flex: /bin/flex.exe [flex 2.5.35]
G++: /c/Programs/x86_64-4.8.2-release-win32-seh-rt_v3-rev3/mingw64/bin/g++.exe [g++.exe (x86_64-win32-seh-rev3, Built by MinGW-W64 project) 4.8.2]
GCC: /c/Programs/x86_64-4.8.2-release-win32-seh-rt_v3-rev3/mingw64/bin/gcc.exe [gcc.exe (x86_64-win32-seh-rev3, Built by MinGW-W64 project) 4.8.2]
G++: /c/Programs/mingw64/bin/g++.exe [g++.exe (x86_64-win32-seh-rev3, Built by MinGW-W64 project) 4.8.2]
GCC: /c/Programs/mingw64/bin/gcc.exe [gcc.exe (x86_64-win32-seh-rev3, Built by MinGW-W64 project) 4.8.2]
GMake: /c/Programs/strawberry-perl-5.20.2.1-64bit/c/bin/gmake.exe [GNU Make 4.0.90]
Git: /c/Programs/Git/cmd/git.exe [git version 1.9.5.msysgit.1]
Java: /c/ProgramData/Oracle/Java/javapath/java.exe [java version "1.8.0_45"]
M4: /bin/m4.exe [m4 (GNU M4) 1.4.16]
Make: /bin/make.exe [GNU Make 3.81]
MinGW-w64: /c/Programs/x86_64-4.8.2-release-win32-seh-rt_v3-rev3/mingw64
MinGW-w64: /c/Programs/mingw64
OpenMPI: /c/Programs/OpenMPI_v1.6.1-x64/bin/mpirun.exe [mpirun.exe (OpenRTE) 1.6.1]
PEexports: /c/Programs/strawberry-perl-5.20.2.1-64bit/c/bin/pexports.exe [PExports 0.44 Copyright 1998, Anders Norlander]
ParaView: /c/Programs/ParaView-4.3.1

2
etc/cshrc
View file

@ -153,7 +153,7 @@ if ( ! $?WM_PRECISION_OPTION ) setenv WM_PRECISION_OPTION DP
# WM_COMPILE_OPTION = Opt | Debug | Prof
if ( ! $?WM_COMPILE_OPTION ) setenv WM_COMPILE_OPTION Opt
setenv WM_COMPILE_OPTION Opt
#setenv WM_COMPILE_OPTION Opt
#setenv WM_COMPILE_OPTION Debug
# WM_MPLIB = SYSTEMOPENMPI | OPENMPI | MPICH | MPICH-GM | HPMPI | GAMMA | MPI | QSMPI | MVAPICH2

2
etc/prefs.csh-EXAMPLE
View file

@ -203,7 +203,7 @@ setenv WM_THIRD_PARTY_USE_CMAKE_322 1
#
# For AllMake.stage2
setenv WM_THIRD_PARTY_USE_OPENMPI_188 1
setenv WM_THIRD_PARTY_USE_OPENMPI_188_ConfigureAdditionalArgs '--enable-mpi-cxx --with-verbs=/usr --with-verbs-libdir=/usr/lib64'
#setenv WM_THIRD_PARTY_USE_OPENMPI_188_ConfigureAdditionalArgs '--enable-mpi-cxx --with-verbs=/usr --with-verbs-libdir=/usr/lib64'
#setenv WM_THIRD_PARTY_USE_OPENMPI_165 1
#setenv WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs '--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
#setenv WM_THIRD_PARTY_USE_OPENMPI_15 1

2
etc/prefs.sh-EXAMPLE
View file

@ -213,7 +213,7 @@ export WM_THIRD_PARTY_USE_CMAKE_322=1
#
# For AllMake.stage2
export WM_THIRD_PARTY_USE_OPENMPI_188=1
export WM_THIRD_PARTY_USE_OPENMPI_188_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
#export WM_THIRD_PARTY_USE_OPENMPI_188_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
#export WM_THIRD_PARTY_USE_OPENMPI_165=1
#export WM_THIRD_PARTY_USE_OPENMPI_165_ConfigureAdditionalArgs='--enable-mpi-cxx --with-openib=/usr --with-openib-libdir=/usr/lib64'
#export WM_THIRD_PARTY_USE_OPENMPI_15=1

5
src/foam/interpolations/GGIInterpolation/GGIInterpolate.C
View file

@ -145,8 +145,11 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridge
{
// Gone beyond my index: my face is not present in the mask
// Go one back and check for next uncovered face
if (maskAddrI > 0)
{
maskAddrI--;
}
maskAddrI--;
break;
}
}

2
src/meshTools/sets/topoSets/cellSet.C
View file

@ -61,7 +61,7 @@ cellSet::cellSet
:
topoSet(mesh, typeName, name, r, w)
{
// Make sure set within valid range
// Make sure set within valid range: there are no retired cells
check(mesh.nCells());
}

5
src/meshTools/sets/topoSets/faceSet.C
View file

@ -63,7 +63,8 @@ faceSet::faceSet
:
topoSet(mesh, typeName, name, r, w)
{
check(mesh.nFaces());
// Sets can also contain retired faces. HJ, 17/Aug/2015
check(mesh.allFaces().size());
}
@ -228,7 +229,7 @@ void faceSet::sync(const polyMesh& mesh)
label faceSet::maxSize(const polyMesh& mesh) const
{
return mesh.nFaces();
return mesh.allFaces().size();
}

5
src/meshTools/sets/topoSets/pointSet.C
View file

@ -62,7 +62,8 @@ pointSet::pointSet
:
topoSet(mesh, typeName, name, r, w)
{
check(mesh.nPoints());
// Sets can contain retired points. HJ, 17/Aug/2015
check(mesh.allPoints().size());
}
@ -147,7 +148,7 @@ void pointSet::sync(const polyMesh& mesh)
label pointSet::maxSize(const polyMesh& mesh) const
{
return mesh.nPoints();
return mesh.allPoints().size();
}