exaFOAM/foam-extend4.1-coherent-io
Archived
1
1
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

Merge branch 'feature/JasakDevelopment' into nextRelease

Browse source
This commit is contained in:
Hrvoje Jasak 2018-05-15 12:00:02 +01:00
commit 7a54aeb99b
862 changed files with 56883 additions and 20969 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

1
ReleaseNotes
View file

@ -1,6 +1,7 @@
# -*- mode: org; -*-
#
#+TITLE: *Release notes for foam-extend-4.0*
#+TITLE: *Version 4.0 - Guimaraes*
#+AUTHOR: foam-extend administrators:
#+AUTHOR: Hrvoje Jasak
#+AUTHOR: Håkan Nilsson

5
applications/solvers/basic/potentialDyMFoam/potentialDyMFoam.C
View file

@ -72,6 +72,11 @@ int main(int argc, char *argv[])
U.internalField() = vector::zero;
}
p.correctBoundaryConditions();
U.correctBoundaryConditions();
phi == (fvc::interpolate(U) & mesh.Sf());
# include "volContinuity.H"
# include "meshCourantNo.H"

5
applications/solvers/compressible/sonicDyMFoam/UEqn.H
View file

@ -7,7 +7,10 @@
UEqn.relax
(
mesh.solutionDict().equationRelaxationFactor(U.select(pimple.finalIter()))
mesh.solutionDict().equationRelaxationFactor
(
U.select(pimple.finalIter())
)
);
solve(UEqn == -fvc::grad(p));

2
applications/solvers/compressible/sonicFoam/pEqn.H
View file

@ -27,8 +27,6 @@
fvm::ddt(psis, p)
+ fvm::div(phid, p)
// Convective flux relaxation terms
+ fvm::SuSp(-divPhid, p)
+ divPhid*p
+ fvc::div(phid2)
- fvm::laplacian(rho*rUA, p)
);

3
applications/solvers/compressible/steadyCompressibleFoam/UEqn.H
View file

@ -3,8 +3,7 @@
fvVectorMatrix UEqn
(
fvm::ddt(rho, U)
+ fvm::div(phi, U)
fvm::div(phi, U)
+ turbulence->divDevRhoReff()
);

8
applications/solvers/compressible/steadyCompressibleFoam/hEqn.H
View file

@ -1,13 +1,14 @@
{
// Solve the enthalpy equation in total enthalpy formulation (see K)
T.storePrevIter();
K = 0.5*(magSqr(U));
fvScalarMatrix hEqn
(
fvm::ddt(rho, h)
+ fvc::ddt(rho, K)
+ fvm::div(phi, h)
fvm::div(phi, h)
+ fvm::SuSp(-fvc::div(phi), h)
+ fvc::div(phi, K)
- fvm::laplacian(turbulence->alphaEff(), h)
==
@ -16,7 +17,6 @@
);
hEqn.relax();
hEqn.solve();
// Bounding of enthalpy taken out

15
applications/solvers/compressible/steadyCompressibleFoam/pEqn.H
View file

@ -21,21 +21,11 @@
p.storePrevIter();
volScalarField divPhid
(
"divPhid",
fvc::div(phid)
);
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::ddt(psis, p)
+ fvm::div(phid, p)
// Convective flux relaxation terms
+ fvm::SuSp(-divPhid, p)
+ divPhid*p
fvm::div(phid, p)
+ fvc::div(phid2)
- fvm::laplacian(rho*rUA, p)
);
@ -49,7 +39,8 @@
}
}
# include "compressibleContinuityErrs.H"
// Use incompressible continuity error check: div(rho U) = 0
# include "continuityErrs.H"
// Relax the pressure
p.relax();

2
applications/solvers/compressible/steadyCompressibleMRFFoam/Make/options
View file

@ -2,7 +2,7 @@ EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/thermophysicalModels/basic/lnInclude \
-I$(LIB_SRC)/turbulenceModels \
-I$(LIB_SRC)/turbulenceModels/compressible/RAS/RASModel \
-I$(LIB_SRC)/turbulenceModels/compressible/RAS/RASModel
EXE_LIBS = \
-lfiniteVolume \

6
applications/solvers/compressible/steadyCompressibleMRFFoam/UEqn.H
View file

@ -1,10 +1,6 @@
// Solve the momentum equation
U.storePrevIter();
fvVectorMatrix UEqn
(
fvm::ddt(rho, U)
+ fvm::div(phi, U)
fvm::div(phi, U)
+ turbulence->divDevRhoReff()
);

1
applications/solvers/compressible/steadyCompressibleMRFFoam/hEqn.H
View file

@ -24,6 +24,7 @@
);
hEqn.relax();
hEqn.solve();
// Bounding of enthalpy taken out
thermo.correct();

22
applications/solvers/compressible/steadyCompressibleMRFFoam/iEqn.H
View file

@ -5,13 +5,30 @@
Urel == U;
mrfZones.relativeVelocity(Urel);
// Bound the relative velocity to preserve the i to h conversion bound
// HJ, 22/Mar/2017
volScalarField magUrel = mag(Urel);
if (max(magUrel) > UMax)
{
volScalarField UrelLimiter = pos(magUrel - UMax)*UMax/(magUrel + smallU)
+ neg(magUrel - UMax);
UrelLimiter.max(scalar(0));
UrelLimiter.min(scalar(1));
Urel *= UrelLimiter;
Urel.correctBoundaryConditions();
}
// Create rotational velocity (= omega x r)
Urot == U - Urel;
T.storePrevIter();
fvScalarMatrix iEqn
(
fvm::ddt(rho, i)
+ fvm::div(phi, i)
fvm::div(phi, i)
+ fvm::SuSp(-fvc::div(phi), i)
- fvm::laplacian(turbulence->alphaEff(), i)
==
// Viscous heating: note sign (devRhoReff has a minus in it)
@ -19,7 +36,6 @@
);
iEqn.relax();
iEqn.solve();
// Calculate enthalpy out of rothalpy

17
applications/solvers/compressible/steadyCompressibleMRFFoam/pEqn.H
View file

@ -16,7 +16,7 @@
mrfZones.correctBoundaryVelocity(U);
// Calculate phi for boundary conditions
phi = rhof*fvc::interpolate(U) & mesh.Sf();
phi = rhof*(fvc::interpolate(U) & mesh.Sf());
surfaceScalarField phid2 = rhoReff/rhof*phi;
@ -29,21 +29,11 @@
p.storePrevIter();
volScalarField divPhid
(
"divPhid",
fvc::div(phid)
);
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::ddt(psis, p)
+ fvm::div(phid, p)
// Convective flux relaxation terms
+ fvm::SuSp(-divPhid, p)
+ divPhid*p
fvm::div(phid, p)
+ fvc::div(phid2)
- fvm::laplacian(rho*rUA, p)
);
@ -57,7 +47,8 @@
}
}
# include "compressibleContinuityErrs.H"
// Use incompressible continuity error check: div(rho U) = 0
# include "continuityErrs.H"
// Relax the pressure
p.relax();

3
applications/solvers/compressible/steadyCompressibleSRFFoam/UEqn.H
View file

@ -3,8 +3,7 @@
fvVectorMatrix UrelEqn
(
fvm::ddt(rho, Urel)
+ fvm::div(phi, Urel)
fvm::div(phi, Urel)
+ turbulence->divDevRhoReff()
+ rho*SRF->Su()
);

6
applications/solvers/compressible/steadyCompressibleSRFFoam/iEqn.H
View file

@ -1,10 +1,11 @@
{
// Solve the rothalpy equation
T.storePrevIter();
fvScalarMatrix iEqn
(
fvm::ddt(rho, i)
+ fvm::div(phi, i)
fvm::div(phi, i)
+ fvm::SuSp(-fvc::div(phi), i)
- fvm::laplacian(turbulence->alphaEff(), i)
==
// Viscous heating: note sign (devRhoReff has a minus in it)
@ -12,7 +13,6 @@
);
iEqn.relax();
iEqn.solve();
// Calculate enthalpy out of rothalpy

15
applications/solvers/compressible/steadyCompressibleSRFFoam/pEqn.H
View file

@ -20,21 +20,11 @@
p.storePrevIter();
volScalarField divPhid
(
"divPhid",
fvc::div(phid)
);
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::ddt(psis, p)
+ fvm::div(phid, p)
// Convective flux relaxation terms
+ fvm::SuSp(-divPhid, p)
+ divPhid*p
fvm::div(phid, p)
+ fvc::div(phid2)
- fvm::laplacian(rho*rUrelA, p)
);
@ -48,7 +38,8 @@
}
}
# include "compressibleContinuityErrs.H"
// Use incompressible continuity error check: div(rho U) = 0
# include "continuityErrs.H"
// Relax the pressure
p.relax();

3
applications/solvers/compressible/steadyUniversalFoam/UEqn.H
View file

@ -3,8 +3,7 @@
fvVectorMatrix UEqn
(
fvm::ddt(rho, U)
+ fvm::div(phi, U)
fvm::div(phi, U)
+ turbulence->divDevRhoReff()
);

5
applications/solvers/compressible/steadyUniversalFoam/hEqn.H
View file

@ -10,8 +10,8 @@
fvScalarMatrix hEqn
(
fvm::ddt(rho, h)
+ fvm::div(phi, h)
fvm::div(phi, h)
+ fvm::SuSp(-fvc::div(phi), h)
- fvm::laplacian(turbulence->alphaEff(), h)
==
fvc::div(faceU, p, "div(U,p)")
@ -22,7 +22,6 @@
);
hEqn.relax();
hEqn.solve();
// Bounding of enthalpy taken out

7
applications/solvers/compressible/steadyUniversalFoam/pEqn.H
View file

@ -24,8 +24,7 @@
{
fvScalarMatrix pEqn
(
fvm::ddt(psis, p)
+ fvm::div(phid, p)
fvm::div(phid, p)
+ fvc::div(phid2)
- fvm::laplacian(rho*rUA, p)
);
@ -39,8 +38,8 @@
}
}
// Use custom continuity error check
# include "universalContinuityErrs.H"
// Use incompressible continuity error check: div(rho U) = 0
# include "continuityErrs.H"
// Relax the pressure
p.relax();

1
applications/solvers/compressible/steadyUniversalFoam/rhoFromP.H
View file

@ -12,4 +12,5 @@
rho = Foam::min(rho, rhoMax);
rho = Foam::max(rho, rhoMin);
rho.relax();
rho.correctBoundaryConditions();
}

3
applications/solvers/compressible/steadyUniversalMRFFoam/UEqn.H
View file

@ -3,8 +3,7 @@
fvVectorMatrix UEqn
(
fvm::ddt(rho, U)
+ fvm::div(phi, U)
fvm::div(phi, U)
+ turbulence->divDevRhoReff()
);

23
applications/solvers/compressible/steadyUniversalMRFFoam/iEqn.H
View file

@ -3,14 +3,29 @@
Urel == U;
mrfZones.relativeVelocity(Urel);
// Bound the relative velocity to preserve the i to h conversion bound
// HJ, 22/Mar/2017
volScalarField magUrel = mag(Urel);
if (max(magUrel) > UMax)
{
volScalarField UrelLimiter = pos(magUrel - UMax)*UMax/(magUrel + smallU)
+ neg(magUrel - UMax);
UrelLimiter.max(scalar(0));
UrelLimiter.min(scalar(1));
Urel *= UrelLimiter;
Urel.correctBoundaryConditions();
}
// Create rotational velocity (= omega x r)
Urot == U - Urel;
fvScalarMatrix iEqn
(
fvm::ddt(rho, i)
+ fvm::div(phi, i)
- fvm::laplacian(turbulence->alphaEff(), i)
fvm::div(phi, i)
+ fvm::SuSp(-fvc::div(phi), i)
- fvm::laplacian(turbulence->alphaEff(), i)
==
// Viscous heating: note sign (devRhoReff has a minus in it)
- (turbulence->devRhoReff() && fvc::grad(U))
@ -23,8 +38,8 @@
// From rothalpy, calculate enthalpy after solution of rothalpy equation
h = i + 0.5*(magSqr(Urot) - magSqr(Urel));
h.correctBoundaryConditions();
// Update thermo for new h
thermo.correct();
psis = thermo.psi()/thermo.Cp()*thermo.Cv();
}

7
applications/solvers/compressible/steadyUniversalMRFFoam/pEqn.H
View file

@ -33,8 +33,7 @@
{
fvScalarMatrix pEqn
(
fvm::ddt(psis, p)
+ fvm::div(phid, p)
fvm::div(phid, p)
+ fvc::div(phid2)
- fvm::laplacian(rho*rUA, p)
);
@ -48,8 +47,8 @@
}
}
// Use custom continuity error check
# include "universalContinuityErrs.H"
// Use incompressible continuity error check: div(rho U) = 0
# include "continuityErrs.H"
// Relax the pressure
p.relax();

1
applications/solvers/compressible/steadyUniversalMRFFoam/rhoFromP.H
View file

@ -12,4 +12,5 @@
rho = Foam::min(rho, rhoMax);
rho = Foam::max(rho, rhoMin);
rho.relax();
rho.correctBoundaryConditions();
}

49
applications/solvers/compressible/steadyUniversalMRFFoam/universalContinuityErrs.H
View file

@ -1,49 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Global
continuityErrs
Description
Calculates and prints the continuity errors.
\*---------------------------------------------------------------------------*/
{
volScalarField contErr = fvc::ddt(rho) + fvc::div(phi);
sumLocalContErr = runTime.deltaT().value()*
mag(contErr)().weightedAverage(mesh.V()).value();
globalContErr = runTime.deltaT().value()*
contErr.weightedAverage(mesh.V()).value();
cumulativeContErr += globalContErr;
Info<< "time step continuity errors : sum local = " << sumLocalContErr
<< ", global = " << globalContErr
<< ", cumulative = " << cumulativeContErr
<< endl;
}
// ************************************************************************* //

6
applications/solvers/coupled/MRFPorousFoam/MRFPorousFoam.C
View file

@ -94,7 +94,7 @@ int main(int argc, char *argv[])
solve
(
tpEqn
tpEqn()
==
- fvc::div(U)
);
@ -112,7 +112,9 @@ int main(int argc, char *argv[])
U.correctBoundaryConditions();
p.correctBoundaryConditions();
phi = (fvc::interpolate(U) & mesh.Sf()) + tpEqn().flux() + tpresSource;
phi = (fvc::interpolate(U) & mesh.Sf())
+ tpEqn().flux()
+ tpresSource;
}
// Make flux relative in rotating zones

53
applications/solvers/coupled/MRFPorousFoam/UEqn.H
View file

@ -1,10 +1,4 @@
{
volScalarField divPhi
(
"divPhi",
fvc::div(phi)
);
// Update boundary velocity for consistency with the flux
mrfZones.correctBoundaryVelocity(U);
@ -15,13 +9,10 @@
+ turbulence->divDevReff()
);
// Add MRF sources
mrfZones.addCoriolis(UEqn);
// Add porous sources
// Add MRF and porous sources implicitly. HJ, 18/Nov/2017
tmp<volTensorField> tTU;
if (addPorosity)
if (addMRF || addPorosity)
{
tTU = tmp<volTensorField>
(
@ -41,6 +32,10 @@
);
volTensorField& TU = tTU();
// Add implicit MRF source as a Hodge dual of the rotational velocity
TU += *mrfZones.omega();
// Add implicit resistance
pZones.addResistance(UEqn, TU);
trTU = inv(TU + tensor(I)*UEqn.A());
@ -58,7 +53,7 @@
// Insert momentum equation
UpEqn.insertEquation(0, UEqn);
if (addPorosity)
if (addMRF || addPorosity)
{
// Manually over-ride the 3x3 block to handle the off-diagonal
// part of the Ap coefficient
@ -68,11 +63,43 @@
const scalarField& V = mesh.V().field();
// Note: insertion should only happen in porous cell zones
// Note: insertion should only happen in MRF and porous cell zones
// HJ, 14/Mar/2016
// Warning. Possible problem with a zone which is both MRF and porous
// The solution is to do the loop below everywhere
// Currently only inserting zones for efficiency. HJ, 18/Nov/2017
register label cellI;
forAll (mrfZones, mrfZoneI)
{
const labelList& curZoneCells = mrfZones[mrfZoneI].zone();
// Loop over all cells in the zone
forAll (curZoneCells, zcI)
{
cellI = curZoneCells[zcI];
const scalar& cellV = V[cellI];
const tensor& cellTU = TUIn[cellI];
CoeffField<vector4>::squareType& cellDD = DD[cellI];
cellDD(0, 0) += cellV*cellTU.xx();
cellDD(0, 1) += cellV*cellTU.xy();
cellDD(0, 2) += cellV*cellTU.xz();
cellDD(1, 0) += cellV*cellTU.yx();
cellDD(1, 1) += cellV*cellTU.yy();
cellDD(2, 2) += cellV*cellTU.yz();
cellDD(2, 0) += cellV*cellTU.zx();
cellDD(2, 1) += cellV*cellTU.zy();
cellDD(2, 2) += cellV*cellTU.zz();
}
}
forAll (pZones, pZoneI)
{
const labelList& curZoneCells = pZones[pZoneI].zone();

7
applications/solvers/coupled/MRFPorousFoam/createMRF.H
View file

@ -1,2 +1,9 @@
MRFZones mrfZones(mesh);
mrfZones.correctBoundaryVelocity(U);
bool addMRF = false;
if (!mrfZones.empty())
{
addMRF = true;
}

4
applications/solvers/coupled/MRFPorousFoam/pEqn.H
View file

@ -2,7 +2,7 @@
tmp<fvScalarMatrix> tpEqn;
tmp<surfaceScalarField> tpresSource;
if (addPorosity)
if (addMRF || addPorosity)
{
// Collect pressure source with tensorial 1/Ap
const volTensorField& rTU = trTU();
@ -10,7 +10,7 @@ if (addPorosity)
tpresSource =
(
(mesh.Sf() & fvc::interpolate(rTU))
& fvc::interpolate(fvc::grad(p))
& fvc::interpolate(fvc::grad(p))
);
const surfaceScalarField& presSource = tpresSource();

1
applications/solvers/coupled/MRFPorousFoam/readBlockSolverControls.H
View file

@ -1,5 +1,6 @@
label pRefCell = 0;
scalar pRefValue = 0;
setRefCell
(
p,

6
applications/solvers/coupled/pUCoupledFoam/UEqn.H
View file

@ -1,10 +1,4 @@
{
volScalarField divPhi
(
"divPhi",
fvc::div(phi)
);
// Momentum equation
fvVectorMatrix UEqn
(

5
applications/solvers/engine/sonicTurbDyMEngineFoam/UEqn.H
View file

@ -8,7 +8,10 @@
UEqn.relax
(
mesh.solutionDict().equationRelaxationFactor(U.select(pimple.finalIter()))
mesh.solutionDict().equationRelaxationFactor
(
U.select(pimple.finalIter())
)
);
solve(UEqn == -fvc::grad(p));

4
applications/solvers/engine/sonicTurbDyMEngineFoam/hEqn.H
View file

@ -12,4 +12,8 @@
hEqn.solve();
thermo.correct();
// Recalculate density
rho = thermo.rho();
rho.correctBoundaryConditions();
}

4
applications/solvers/engine/sonicTurbDyMEngineFoam/pEqn.H
View file

@ -1,6 +1,4 @@
{
rho = thermo.rho();
rUA = 1.0/UEqn.A();
U = rUA*UEqn.H();
@ -56,12 +54,10 @@
p.relax();
}
# include "rhoEqn.H"
# include "compressibleContinuityErrs.H"
U -= rUA*fvc::grad(p);
U.correctBoundaryConditions();
DpDt = fvc::DDt(surfaceScalarField("phiU", phi/fvc::interpolate(rho)), p);
dpdt = fvc::ddt(p);
}

24
applications/solvers/engine/sonicTurbDyMEngineFoam/sonicTurbDyMEngineFoam.C
View file

@ -79,14 +79,15 @@ int main(int argc, char *argv[])
Info<< "Crank angle = " << runTime.theta() << " CA-deg" << endl;
// Make flux absolute
phi += meshFlux;
// Make the fluxes absolute (using the ddt(rho, U) scheme)
phi += fvc::interpolate(rho)*fvc::meshPhi(rho, U);
bool meshChanged = mesh.update();
# include "volContinuity.H"
mesh.setBoundaryVelocity(U);
// Make the fluxes relative (using the ddt(rho, U) scheme)
phi -= fvc::interpolate(rho)*fvc::meshPhi(rho, U);
if (meshChanged)
{
@ -95,14 +96,7 @@ int main(int argc, char *argv[])
rho.correctBoundaryConditions();
}
meshFlux = fvc::interpolate(rho)*fvc::meshPhi(rho, U);
phi = fvc::interpolate(rho)
*((fvc::interpolate(U) & mesh.Sf()) - fvc::meshPhi(rho, U));
DpDt = dpdt + fvc::div(phi/fvc::interpolate(rho), p)
- fvc::div(phi/fvc::interpolate(rho) + fvc::meshPhi(U))*p;
if (meshChanged)
{
# include "compressibleCourantNo.H"
}
@ -111,22 +105,20 @@ int main(int argc, char *argv[])
while (pimple.loop())
{
# include "rhoEqn.H"
# include "hEqn.H"
# include "UEqn.H"
// --- PISO loop
while (pimple.correct())
{
# include "pEqn.H"
# include "hEqn.H"
}
turbulence->correct();
}
turbulence->correct();
# include "logSummary.H"
rho = thermo.rho();
runTime.write();
# include "infoDataOutput.H"

49
applications/solvers/immersedBoundary/SOLVER_COOKBOOK
View file

@ -1,49 +0,0 @@
Make/options: add
-I$(LIB_SRC)/triSurface/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I../immersedBoundary/lnInclude
-ltriSurface \
-lmeshTools \
-L$(FOAM_USER_LIBBIN) -limmersedBoundary \
createFields.H: add
# include "createIbMasks.H"
solver:
1) add immersed boundary headers
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
2) on calculation of face fluxes (or their components), mask with faceIbMask
3) before to adjustPhi, add:
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
4) on explicit updates, add correctBoundaryConditions();
eg.
U = fvc::reconstruct(phi);
U.correctBoundaryConditions();
5) On reports of continuity error, add masking:
Info<< "IB-masked continuity error = "
<< mag(cellIbMask*fvc::div(phi))().weightedAverage(mesh.V()).value()
<< endl;
or use immersedBoundaryContinuityErrs.H
5) Chenge Courant number check to be IB-sensitive, using
immersedBoundaryCourantNo.H

3
applications/solvers/immersedBoundary/icoDyMIbFoam/Make/files
View file

@ -1,3 +0,0 @@
icoDyMIbFoam.C
EXE = $(FOAM_APPBIN)/icoDyMIbFoam

56
applications/solvers/immersedBoundary/icoDyMIbFoam/createFields.H
View file

@ -1,56 +0,0 @@
Info<< "Reading transportProperties\n" << endl;
IOdictionary transportProperties
(
IOobject
(
"transportProperties",
runTime.constant(),
mesh,
IOobject::MUST_READ_IF_MODIFIED,
IOobject::NO_WRITE
)
);
dimensionedScalar nu
(
transportProperties.lookup("nu")
);
Info<< "Reading field p\n" << endl;
volScalarField p
(
IOobject
(
"p",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
Info<< "Reading field U\n" << endl;
volVectorField U
(
IOobject
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
# include "createPhi.H"
label pRefCell = 0;
scalar pRefValue = 0.0;
setRefCell(p, pimple.dict(), pRefCell, pRefValue);
mesh.schemesDict().setFluxRequired(p.name());

152
applications/solvers/immersedBoundary/icoDyMIbFoam/icoDyMIbFoam.C
View file

@ -1,152 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
icoDyMOversetFoam
Description
Transient solver for incompressible, laminar flow of Newtonian fluids
with dynamic mesh and immersed boundary mesh support.
Author
Hrvoje Jasak, Wikki Ltd. All rights reserved
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "dynamicFvMesh.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
#include "pimpleControl.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createDynamicFvMesh.H"
pimpleControl pimple(mesh);
# include "createFields.H"
# include "initContinuityErrs.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< "\nStarting time loop\n" << endl;
while (runTime.loop())
{
Info<< "Time = " << runTime.timeName() << nl << endl;
// Make the fluxes absolute
fvc::makeAbsolute(phi, U);
bool meshChanged = mesh.update();
reduce(meshChanged, orOp<bool>());
Info<< "Mesh update" << meshChanged << endl;
# include "createIbMasks.H"
// Make the fluxes relative to the mesh motion
fvc::makeRelative(phi, U);
# include "CourantNo.H"
// Pressure-velocity corrector
while (pimple.loop())
{
fvVectorMatrix UEqn
(
fvm::ddt(U)
+ fvm::div(phi, U)
- fvm::laplacian(nu, U)
);
if (pimple.momentumPredictor())
{
solve(UEqn == -fvc::grad(p));
}
// --- PISO loop
while (pimple.correct())
{
volScalarField rUA = 1.0/UEqn.A();
U = rUA*UEqn.H();
// Immersed boundary update
U.correctBoundaryConditions();
phi = faceIbMask*(fvc::interpolate(U) & mesh.Sf());
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, p);
// Non-orthogonal pressure corrector loop
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::laplacian(rUA, p) == fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve
(
mesh.solutionDict().solver
(
p.select(pimple.finalInnerIter())
)
);
if (pimple.finalNonOrthogonalIter())
{
phi -= pEqn.flux();
}
}
# include "immersedBoundaryContinuityErrs.H"
// Make the fluxes relative to the mesh motion
fvc::makeRelative(phi, U);
U -= rUA*fvc::grad(p);
U.correctBoundaryConditions();
}
}
runTime.write();
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
}
Info<< "End\n" << endl;
return(0);
}
// ************************************************************************* //

3
applications/solvers/immersedBoundary/icoIbFoam/Make/files
View file

@ -1,3 +0,0 @@
icoIbFoam.C
EXE = $(FOAM_APPBIN)/icoIbFoam

13
applications/solvers/immersedBoundary/icoIbFoam/Make/options
View file

@ -1,13 +0,0 @@
EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
EXE_LIBS = \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-limmersedBoundary \
-llduSolvers

139
applications/solvers/immersedBoundary/icoIbFoam/icoIbFoam.C
View file

@ -1,139 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
icoIbFoam
Description
Transient solver for incompressible, laminar flow of Newtonian fluids
with immersed boundary support.
Author
Hrvoje Jasak, Wikki Ltd. All rights reserved
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
#include "pimpleControl.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
pimpleControl pimple(mesh);
# include "createIbMasks.H"
# include "createFields.H"
# include "initContinuityErrs.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< "\nStarting time loop\n" << endl;
while (runTime.loop())
{
Info<< "Time = " << runTime.timeName() << nl << endl;
# include "CourantNo.H"
// Pressure-velocity corrector
while (pimple.loop())
{
fvVectorMatrix UEqn
(
fvm::ddt(U)
+ fvm::div(phi, U)
- fvm::laplacian(nu, U)
);
if (pimple.momentumPredictor())
{
solve(UEqn == -fvc::grad(p));
}
// --- PISO loop
while (pimple.correct())
{
volScalarField rUA = 1.0/UEqn.A();
U = rUA*UEqn.H();
// Immersed boundary update
U.correctBoundaryConditions();
phi = faceIbMask*(fvc::interpolate(U) & mesh.Sf());
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, p);
// Non-orthogonal pressure corrector loop
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::laplacian(rUA, p) == fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve
(
mesh.solutionDict().solver
(
p.select(pimple.finalInnerIter())
)
);
if (pimple.finalNonOrthogonalIter())
{
phi -= pEqn.flux();
}
}
# include "immersedBoundaryContinuityErrs.H"
U -= rUA*fvc::grad(p);
U.correctBoundaryConditions();
}
}
runTime.write();
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
}
Info<< "End\n" << endl;
return 0;
}
// ************************************************************************* //

3
applications/solvers/immersedBoundary/interIbFoam/Make/files
View file

@ -1,3 +0,0 @@
interIbFoam.C
EXE = $(FOAM_APPBIN)/interIbFoam

27
applications/solvers/immersedBoundary/interIbFoam/UEqn.H
View file

@ -1,27 +0,0 @@
surfaceScalarField muEff
(
"muEff",
twoPhaseProperties.muf()
+ fvc::interpolate(rho*turbulence->nut())
);
fvVectorMatrix UEqn
(
fvm::ddt(rho, U)
+ fvm::div(rhoPhi, U)
- fvm::laplacian(muEff, U)
- (fvc::grad(U) & fvc::grad(muEff))
);
UEqn.relax();
if (pimple.momentumPredictor())
{
solve
(
UEqn
==
- gh*fvc::grad(rho)
- fvc::grad(pd)
);
}

56
applications/solvers/immersedBoundary/interIbFoam/alphaEqn.H
View file

@ -1,56 +0,0 @@
{
word alphaScheme("div(phi,alpha)");
word alpharScheme("div(phirb,alpha)");
// New formulation of phir: Co condition
surfaceScalarField phir
(
"phir",
faceIbMask*interface.cAlpha()*interface.nHatf()*
min
(
scalar(0.5)/ // This is ref compression Co number for cAlpha = 1
(
mesh.surfaceInterpolation::deltaCoeffs()*
mesh.time().deltaT()
),
mag(phi/mesh.magSf())
+ dimensionedScalar("small", dimVelocity, 1e-3)
)
);
fvScalarMatrix alpha1Eqn
(
fvm::ddt(alpha1)
+ fvm::div(phi, alpha1, alphaScheme)
+ fvm::div
(
-fvc::flux(-phir, scalar(1) - alpha1, alpharScheme),
alpha1,
alpharScheme
)
);
alpha1Eqn.relax();
alpha1Eqn.solve();
Info<< "Liquid phase volume fraction = "
<< alpha1.weightedAverage(mesh.V()).value()
<< " Min(alpha1) = " << min(cellIbMask*alpha1).value()
<< " Max(alpha1) = " << max(cellIbMask*alpha1).value()
<< endl;
rhoPhi = faceIbMask*(alpha1Eqn.flux()*(rho1 - rho2) + phi*rho2);
// Limit alpha to handle IB cells
// alpha1.max(0);
// alpha1.min(1);
// Update of interface and density
interface.correct();
twoPhaseProperties.correct();
// Calculate density using limited alpha1
rho = twoPhaseProperties.rho();
rho.correctBoundaryConditions();
}

58
applications/solvers/immersedBoundary/interIbFoam/correctPhi.H
View file

@ -1,58 +0,0 @@
{
# include "continuityErrs.H"
wordList pcorrTypes
(
pd.boundaryField().size(),
zeroGradientFvPatchScalarField::typeName
);
for (label i=0; i<pd.boundaryField().size(); i++)
{
if (pd.boundaryField()[i].fixesValue())
{
pcorrTypes[i] = fixedValueFvPatchScalarField::typeName;
}
}
volScalarField pcorr
(
IOobject
(
"pcorr",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh,
dimensionedScalar("pcorr", pd.dimensions(), 0.0),
pcorrTypes
);
dimensionedScalar rUAf("(1|A(U))", dimTime/rho.dimensions(), 1.0);
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, pcorr);
mesh.schemesDict().setFluxRequired(pcorr.name());
while(pimple.correctNonOrthogonal())
{
fvScalarMatrix pcorrEqn
(
fvm::laplacian(rUAf, pcorr) == fvc::div(phi)
);
pcorrEqn.setReference(pdRefCell, pdRefValue);
pcorrEqn.solve();
if (pimple.finalNonOrthogonalIter())
{
phi -= pcorrEqn.flux();
}
}
# include "immersedBoundaryContinuityErrs.H"
}

118
applications/solvers/immersedBoundary/interIbFoam/createFields.H
View file

@ -1,118 +0,0 @@
Info<< "Reading field pd\n" << endl;
volScalarField pd
(
IOobject
(
"pd",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
Info<< "Reading field alpha1\n" << endl;
volScalarField alpha1
(
IOobject
(
"alpha1",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
Info<< "Reading field U\n" << endl;
volVectorField U
(
IOobject
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
# include "createPhi.H"
Info<< "Reading transportProperties\n" << endl;
twoPhaseMixture twoPhaseProperties(U, phi, "alpha1");
const dimensionedScalar& rho1 = twoPhaseProperties.rho1();
const dimensionedScalar& rho2 = twoPhaseProperties.rho2();
// Need to store rho for ddt(rho, U)
volScalarField rho
(
IOobject
(
"rho",
runTime.timeName(),
mesh,
IOobject::READ_IF_PRESENT
),
alpha1*rho1 + (scalar(1) - alpha1)*rho2,
alpha1.boundaryField().types()
);
rho.oldTime();
// Mass flux
// Initialisation does not matter because rhoPhi is reset after the
// alpha1 solution before it is used in the U equation.
surfaceScalarField rhoPhi
(
IOobject
(
"rho*phi",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
rho1*phi
);
Info<< "Calculating field g.h\n" << endl;
volScalarField gh("gh", g & mesh.C());
surfaceScalarField ghf("gh", g & mesh.Cf());
volScalarField p
(
IOobject
(
"p",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
pd + rho*gh
);
label pdRefCell = 0;
scalar pdRefValue = 0.0;
setRefCell(pd, pimple.dict(), pdRefCell, pdRefValue);
mesh.schemesDict().setFluxRequired(pd.name());
mesh.schemesDict().setFluxRequired(alpha1.name());
// Construct interface from alpha1 distribution
interfaceProperties interface(alpha1, U, twoPhaseProperties);
// Construct incompressible turbulence model
autoPtr<incompressible::turbulenceModel> turbulence
(
incompressible::turbulenceModel::New(U, phi, twoPhaseProperties)
);

24
applications/solvers/immersedBoundary/interIbFoam/limitU.H
View file

@ -1,24 +0,0 @@
{
scalar limitMagU = readScalar(pimple.dict().lookup("limitMagU"));
volScalarField magU(mag(U));
scalar maxMagU = max(magU).value();
Info<< "mag(U): max: " << maxMagU
<< " avg: " << magU.weightedAverage(mesh.V()).value();
if (maxMagU > limitMagU)
{
U.internalField() *=
neg(magU.internalField() - limitMagU)
+ pos(magU.internalField() - limitMagU)*
limitMagU/(magU.internalField() + SMALL);
U.correctBoundaryConditions();
Info << " ...limiting" << endl;
}
else
{
Info << endl;
}
}

53
applications/solvers/immersedBoundary/interIbFoam/pEqn.H
View file

@ -1,53 +0,0 @@
{
volScalarField rUA = 1.0/UEqn.A();
surfaceScalarField rUAf = fvc::interpolate(rUA);
U = rUA*UEqn.H();
// Immersed boundary update
U.correctBoundaryConditions();
# include "limitU.H"
surfaceScalarField phiU
(
"phiU",
faceIbMask*(fvc::interpolate(U) & mesh.Sf())
);
phi = phiU
+ faceIbMask*
(
fvc::interpolate(interface.sigmaK())*fvc::snGrad(alpha1)
- ghf*fvc::snGrad(rho)
)*rUAf*mesh.magSf();
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, pd);
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pdEqn
(
fvm::laplacian(rUAf, pd, "laplacian(rAU,pd)") == fvc::div(phi)
);
pdEqn.setReference(pdRefCell, pdRefValue);
pdEqn.solve
(
mesh.solutionDict().solver(pd.select(pimple.finalInnerIter()))
);
if (pimple.finalNonOrthogonalIter())
{
phi -= pdEqn.flux();
}
}
// Explicitly relax pressure
pd.relax();
U += rUA*fvc::reconstruct((phi - phiU)/rUAf);
U.correctBoundaryConditions();
}

3
applications/solvers/immersedBoundary/pimpleDyMIbFoam/Make/files Normal file
View file

@ -0,0 +1,3 @@
pimpleDyMIbFoam.C
EXE = $(FOAM_APPBIN)/pimpleDyMIbFoam

27
applications/solvers/immersedBoundary/interIbFoam/Make/options → applications/solvers/immersedBoundary/pimpleDyMIbFoam/Make/options
View file

@ -1,22 +1,23 @@
EXE_INC = \
-I$(LIB_SRC)/transportModels \
-I$(LIB_SRC)/transportModels/incompressible/lnInclude \
-I$(LIB_SRC)/transportModels/interfaceProperties/lnInclude \
-I$(LIB_SRC)/turbulenceModels/incompressible/turbulenceModel \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicFvMesh/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicMesh/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
-I$(LIB_SRC)/turbulenceModels/incompressible/turbulenceModel \
-I$(LIB_SRC)/transportModels \
-I$(LIB_SRC)/transportModels/incompressible/singlePhaseTransportModel
EXE_LIBS = \
-linterfaceProperties \
-lfiniteVolume \
-limmersedBoundary \
-ldynamicFvMesh \
-ltopoChangerFvMesh \
-ldynamicMesh \
-lmeshTools \
-lincompressibleTransportModels \
-lincompressibleTurbulenceModel \
-lincompressibleRASModels \
-lincompressibleLESModels \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-limmersedBoundary \
-llduSolvers
-llduSolvers \
-L$(MESQUITE_LIB_DIR) -lmesquite

26
applications/solvers/immersedBoundary/pimpleDyMIbFoam/UEqn.H Normal file
View file

@ -0,0 +1,26 @@
// Convection-diffusion matrix
fvVectorMatrix HUEqn
(
fvm::div(phi, U)
+ turbulence->divDevReff()
);
// Time derivative matrix
fvVectorMatrix ddtUEqn(fvm::ddt(U));
// Get under-relaxation factor
scalar UUrf =
mesh.solutionDict().equationRelaxationFactor(U.select(pimple.finalIter()));
if (pimple.momentumPredictor())
{
// Solve momentum predictor
solve
(
ddtUEqn
+ relax(HUEqn, UUrf)
==
- fvc::grad(p),
mesh.solutionDict().solver((U.select(pimple.finalIter())))
);
}

31
applications/solvers/immersedBoundary/pimpleDyMIbFoam/correctPhi.H Normal file
View file

@ -0,0 +1,31 @@
{
volScalarField pcorr("pcorr", p);
// Initialise flux with interpolated velocity
phi = fvc::interpolate(U) & mesh.Sf();
adjustPhi(phi, U, pcorr);
mesh.schemesDict().setFluxRequired(pcorr.name());
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pcorrEqn
(
fvm::laplacian(1/aU, pcorr) == fvc::div(phi)
);
pcorrEqn.setReference(pRefCell, pRefValue);
pcorrEqn.solve();
if (pimple.finalNonOrthogonalIter())
{
phi -= pcorrEqn.flux();
}
// Fluxes are corrected to absolute velocity and further corrected
// later. HJ, 6/Feb/2009
}
# include "continuityErrs.H"
}

11
applications/solvers/immersedBoundary/pimpleDyMIbFoam/createControls.H Normal file
View file

@ -0,0 +1,11 @@
#include "createTimeControls.H"
bool correctPhi
(
pimple.dict().lookupOrDefault("correctPhi", false)
);
bool checkMeshCourantNo
(
pimple.dict().lookupOrDefault("checkMeshCourantNo", false)
);

43
applications/solvers/immersedBoundary/icoIbFoam/createFields.H → applications/solvers/immersedBoundary/pimpleDyMIbFoam/createFields.H
View file

@ -1,23 +1,3 @@
Info<< "Reading transportProperties\n" << endl;
IOdictionary transportProperties
(
IOobject
(
"transportProperties",
runTime.constant(),
mesh,
IOobject::MUST_READ_IF_MODIFIED,
IOobject::NO_WRITE
)
);
dimensionedScalar nu
(
transportProperties.lookup("nu")
);
Info<< "Reading field p\n" << endl;
volScalarField p
(
@ -54,3 +34,26 @@
scalar pRefValue = 0.0;
setRefCell(p, pimple.dict(), pRefCell, pRefValue);
mesh.schemesDict().setFluxRequired(p.name());
singlePhaseTransportModel laminarTransport(U, phi);
autoPtr<incompressible::turbulenceModel> turbulence
(
incompressible::turbulenceModel::New(U, phi, laminarTransport)
);
Info<< "Reading field aU if present\n" << endl;
volScalarField aU
(
IOobject
(
"aU",
runTime.timeName(),
mesh,
IOobject::READ_IF_PRESENT,
IOobject::AUTO_WRITE
),
mesh,
1/runTime.deltaT(),
zeroGradientFvPatchScalarField::typeName
);

58
applications/solvers/immersedBoundary/pimpleDyMIbFoam/pEqn.H Normal file
View file

@ -0,0 +1,58 @@
{
p.boundaryField().updateCoeffs();
// Prepare clean Ap without time derivative contribution and
// without contribution from under-relaxation
// HJ, 26/Oct/2015
aU = HUEqn.A();
// Store velocity under-relaxation point before using U for the flux
// precursor
U.storePrevIter();
U = HUEqn.H()/aU;
phi = (fvc::interpolate(U) & mesh.Sf());
// Global flux balance
adjustPhi(phi, U, p);
while (pimple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::laplacian(1/aU, p) == fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve
(
mesh.solutionDict().solver(p.select(pimple.finalInnerIter()))
);
if (pimple.finalNonOrthogonalIter())
{
phi -= pEqn.flux();
}
}
// Explicitly relax pressure for momentum corrector except for last corrector
if (!pimple.finalIter())
{
p.relax();
}
// Make the fluxes relative to the mesh motion
fvc::makeRelative(phi, U);
# include "movingMeshContinuityErrs.H"
U = UUrf*
(
1.0/(aU + ddtUEqn.A())*
(
U*aU - fvc::grad(p) + ddtUEqn.H()
)
)
+ (1 - UUrf)*U.prevIter();
U.correctBoundaryConditions();
}

78
applications/solvers/immersedBoundary/interIbFoam/interIbFoam.C → applications/solvers/immersedBoundary/pimpleDyMIbFoam/pimpleDyMIbFoam.C
View file

@ -22,19 +22,17 @@ License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
interIbFoam
pimpleDyMFoam.C
Description
Solver for 2 incompressible, isothermal immiscible fluids using a VOF
(volume of fluid) phase-fraction based interface capturing approach,
with immersed boundary support
The momentum and other fluid properties are of the "mixture" and a single
momentum equation is solved.
Transient solver for incompressible, flow of Newtonian fluids
with dynamic mesh using the PIMPLE (merged PISO-SIMPLE) algorithm.
Turbulence modelling is generic, i.e. laminar, RAS or LES may be selected.
For a two-fluid approach see twoPhaseEulerFoam.
Consistent formulation without time-step and relaxation dependence by Jasak
Support for immersed boundary
Author
Hrvoje Jasak, Wikki Ltd. All rights reserved
@ -42,32 +40,30 @@ Author
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "interfaceProperties.H"
#include "twoPhaseMixture.H"
#include "singlePhaseTransportModel.H"
#include "turbulenceModel.H"
#include "dynamicFvMesh.H"
#include "pimpleControl.H"
#include "immersedBoundaryPolyPatch.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
#include "emptyFvPatch.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
# include "createDynamicFvMesh.H"
pimpleControl pimple(mesh);
# include "readGravitationalAcceleration.H"
# include "initContinuityErrs.H"
# include "createFields.H"
# include "createIbMasks.H"
# include "createTimeControls.H"
# include "correctPhi.H"
# include "CourantNo.H"
# include "setInitialDeltaT.H"
# include "createFields.H"
# include "createControls.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@ -75,19 +71,46 @@ int main(int argc, char *argv[])
while (runTime.run())
{
# include "readTimeControls.H"
# include "immersedBoundaryCourantNo.H"
# include "readControls.H"
# include "CourantNo.H"
# include "setDeltaT.H"
runTime++;
Info<< "Time = " << runTime.timeName() << nl << endl;
// Pressure-velocity corrector
bool meshChanged = mesh.update();
U.correctBoundaryConditions();
p.correctBoundaryConditions();
aU.correctBoundaryConditions();
phi.correctBoundaryConditions();
turbulence->correct();
# include "updateIbMasks.H"
# include "volContinuity.H"
if (runTime.outputTime())
{
volScalarField divMeshPhi("divMeshPhi", mag(fvc::surfaceIntegrate(mesh.phi())));
divMeshPhi.write();
}
if (checkMeshCourantNo)
{
# include "meshCourantNo.H"
}
// Fluxes will be corrected to absolute velocity
// HJ, 6/Feb/2009
# include "correctPhi.H"
// Make the fluxes relative to the mesh motion
fvc::makeRelative(phi, U);
// --- PIMPLE loop
while (pimple.loop())
{
twoPhaseProperties.correct();
# include "UEqn.H"
// --- PISO loop
@ -96,15 +119,6 @@ int main(int argc, char *argv[])
# include "pEqn.H"
}
# include "immersedBoundaryContinuityErrs.H"
# include "limitU.H"
p = pd + rho*gh;
p.correctBoundaryConditions();
# include "alphaEqn.H"
turbulence->correct();
}

5
applications/solvers/immersedBoundary/pimpleDyMIbFoam/readControls.H Normal file
View file

@ -0,0 +1,5 @@
#include "readTimeControls.H"
correctPhi = pimple.dict().lookupOrDefault("correctPhi", false);
checkMeshCourantNo = pimple.dict().lookupOrDefault("checkMeshCourantNo", false);

3
applications/solvers/immersedBoundary/porousSimpleIbFoam/Make/files
View file

@ -1,3 +0,0 @@
porousSimpleIbFoam.C
EXE = $(FOAM_APPBIN)/porousSimpleIbFoam

21
applications/solvers/immersedBoundary/porousSimpleIbFoam/Make/options
View file

@ -1,21 +0,0 @@
EXE_INC = \
-I$(LIB_SRC)/turbulenceModels \
-I$(LIB_SRC)/turbulenceModels/incompressible/RAS/RASModel \
-I$(LIB_SRC)/transportModels \
-I$(LIB_SRC)/transportModels/incompressible/singlePhaseTransportModel \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
EXE_LIBS = \
-lincompressibleRASModels \
-lincompressibleTransportModels \
-lincompressibleTurbulenceModel \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-limmersedBoundary \
-limmersedBoundaryTurbulence \
-llduSolvers

12
applications/solvers/immersedBoundary/porousSimpleIbFoam/UEqn.H
View file

@ -1,12 +0,0 @@
// Solve the Momentum equation
tmp<fvVectorMatrix> UEqn
(
fvm::div(phi, U)
+ turbulence->divDevReff()
);
UEqn().relax();
pZones.addResistance(UEqn());
solve(UEqn() == -fvc::grad(p));

44
applications/solvers/immersedBoundary/porousSimpleIbFoam/createFields.H
View file

@ -1,44 +0,0 @@
Info << "Reading field p\n" << endl;
volScalarField p
(
IOobject
(
"p",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
Info << "Reading field U\n" << endl;
volVectorField U
(
IOobject
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
# include "createPhi.H"
label pRefCell = 0;
scalar pRefValue = 0.0;
setRefCell(p, simple.dict(), pRefCell, pRefValue);
mesh.schemesDict().setFluxRequired(p.name());
singlePhaseTransportModel laminarTransport(U, phi);
autoPtr<incompressible::RASModel> turbulence
(
incompressible::RASModel::New(U, phi, laminarTransport)
);
porousZones pZones(mesh);

41
applications/solvers/immersedBoundary/porousSimpleIbFoam/pEqn.H
View file

@ -1,41 +0,0 @@
{
volScalarField AU = UEqn().A();
U = UEqn().H()/AU;
// Immersed boundary update
U.correctBoundaryConditions();
UEqn.clear();
phi = faceIbMask*(fvc::interpolate(U) & mesh.Sf());
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, p);
// Non-orthogonal pressure corrector loop
while (simple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::laplacian(1.0/AU, p) == fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve();
if (simple.finalNonOrthogonalIter())
{
phi -= pEqn.flux();
}
}
# include "immersedBoundaryContinuityErrs.H"
// Explicitly relax pressure for momentum corrector
p.relax();
// Momentum corrector
U -= fvc::grad(p)/AU;
U.correctBoundaryConditions();
}

88
applications/solvers/immersedBoundary/porousSimpleIbFoam/porousSimpleIbFoam.C
View file

@ -1,88 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
simpleIbFoam
Description
Steady-state solver for incompressible, turbulent flow
with porous zones and immersed boundary support.
Author
Hrvoje Jasak, Wikki Ltd. All rights reserved
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "singlePhaseTransportModel.H"
#include "RASModel.H"
#include "porousZones.H"
#include "simpleControl.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
simpleControl simple(mesh);
# include "createIbMasks.H"
# include "createFields.H"
# include "initContinuityErrs.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< "\nStarting time loop\n" << endl;
while (simple.loop())
{
Info<< "Time = " << runTime.timeName() << nl << endl;
// Pressure-velocity SIMPLE corrector
{
# include "UEqn.H"
# include "pEqn.H"
}
turbulence->correct();
runTime.write();
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
}
Info<< "End\n" << endl;
return 0;
}
// ************************************************************************* //

3
applications/solvers/immersedBoundary/potentialIbFoam/Make/files
View file

@ -1,3 +0,0 @@
potentialIbFoam.C
EXE = $(FOAM_APPBIN)/potentialIbFoam

16
applications/solvers/immersedBoundary/potentialIbFoam/Make/options
View file

@ -1,16 +0,0 @@
EXE_INC = \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicFvMesh/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicMesh/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
EXE_LIBS = \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-ldynamicFvMesh \
-limmersedBoundary \
-llduSolvers

50
applications/solvers/immersedBoundary/potentialIbFoam/createFields.H
View file

@ -1,50 +0,0 @@
Info<< "Reading field p\n" << endl;
volScalarField p
(
IOobject
(
"p",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::NO_WRITE
),
mesh
);
// Do not reset p
Info<< "Reading field U\n" << endl;
volVectorField U
(
IOobject
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
// Do not reset U
surfaceScalarField phi
(
IOobject
(
"phi",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
fvc::interpolate(U) & mesh.Sf()
);
label pRefCell = 0;
scalar pRefValue = 0.0;
setRefCell(p, simple.dict(), pRefCell, pRefValue);
mesh.schemesDict().setFluxRequired(p.name());

231
applications/solvers/immersedBoundary/potentialIbFoam/potentialIbFoam.C
View file

@ -1,231 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
potentialIbFoam
Description
Potential flow solver with immersed boundary support.
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
#include "simpleControl.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
argList::validOptions.insert("writep", "");
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
simpleControl simple(mesh);
# include "createIbMasks.H"
# include "createFields.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< nl << "Calculating potential flow" << endl;
// Do correctors over the complete set
while (simple.correctNonOrthogonal())
{
phi = faceIbMask*(linearInterpolate(U) & mesh.Sf());
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
// Adjust fluxes
adjustPhi(phi, U, p);
p.storePrevIter();
fvScalarMatrix pEqn
(
fvm::laplacian
(
dimensionedScalar
(
"1",
dimTime/p.dimensions()*dimensionSet(0, 2, -2, 0, 0),
1
),
p
)
==
fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve();
// Correct the flux
phi -= pEqn.flux();
if (!simple.finalNonOrthogonalIter())
{
p.relax();
}
Info<< "p min " << gMin(p.internalField())
<< " max " << gMax(p.internalField())
<< " masked min "
<< gMin(cellIbMask.internalField()*p.internalField())
<< " max "
<< gMax(cellIbMask.internalField()*p.internalField())
<< endl;
Info<< "continuity error = "
<< mag
(
fvc::div(faceIbMask*phi)
)().weightedAverage(mesh.V()).value()
<< endl;
Info<< "Contour continuity error = "
<< mag(sum(phi.boundaryField()))
<< endl;
U = fvc::reconstruct(phi);
U.correctBoundaryConditions();
Info<< "Interpolated U error = "
<< (
sqrt
(
sum
(
sqr
(
faceIbMask*
(
fvc::interpolate(U) & mesh.Sf()
)
- phi
)
)
)/sum(mesh.magSf())
).value()
<< endl;
}
// Calculate velocity magnitude
{
volScalarField magU = cellIbMask*mag(U);
Info << "IB-masked mag(U): max: " << gMax(magU.internalField())
<< " min: " << gMin(magU.internalField()) << endl;
}
// Force the write
U.write();
phi.write();
cellIbMask.write();
cellIbMaskExt.write();
if (args.optionFound("writep"))
{
// Find reference patch
label refPatch = -1;
scalar maxMagU = 0;
// Go through all velocity patches and find the one that fixes
// velocity to the largest value
forAll (U.boundaryField(), patchI)
{
const fvPatchVectorField& Upatch = U.boundaryField()[patchI];
if (Upatch.fixesValue())
{
// Calculate mean velocity
scalar u = sum(mag(Upatch));
label patchSize = Upatch.size();
reduce(u, sumOp<scalar>());
reduce(patchSize, sumOp<label>());
if (patchSize > 0)
{
scalar curMag = u/patchSize;
if (curMag > maxMagU)
{
refPatch = patchI;
maxMagU = curMag;
}
}
}
}
if (refPatch > -1)
{
// Calculate reference pressure
const fvPatchVectorField& Upatch = U.boundaryField()[refPatch];
const fvPatchScalarField& pPatch = p.boundaryField()[refPatch];
scalar patchE = sum(mag(pPatch + 0.5*magSqr(Upatch)));
label patchSize = Upatch.size();
reduce(patchE, sumOp<scalar>());
reduce(patchSize, sumOp<label>());
scalar e = patchE/patchSize;
Info<< "Using reference patch " << refPatch
<< " with mag(U) = " << maxMagU
<< " p + 0.5*U^2 = " << e << endl;
p.internalField() = e - 0.5*magSqr(U.internalField());
p.correctBoundaryConditions();
}
else
{
Info<< "No reference patch found. Writing potential function"
<< endl;
}
p.write();
}
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
Info<< "End\n" << endl;
return 0;
}
// ************************************************************************* //

3
applications/solvers/immersedBoundary/simpleIbFoam/Make/files
View file

@ -1,3 +0,0 @@
simpleIbFoam.C
EXE = $(FOAM_APPBIN)/simpleIbFoam

21
applications/solvers/immersedBoundary/simpleIbFoam/Make/options
View file

@ -1,21 +0,0 @@
EXE_INC = \
-I$(LIB_SRC)/turbulenceModels \
-I$(LIB_SRC)/turbulenceModels/incompressible/RAS/RASModel \
-I$(LIB_SRC)/transportModels \
-I$(LIB_SRC)/transportModels/incompressible/singlePhaseTransportModel \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
EXE_LIBS = \
-lincompressibleRASModels \
-lincompressibleTransportModels \
-lincompressibleTurbulenceModel \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-limmersedBoundary \
-limmersedBoundaryTurbulence \
-llduSolvers

10
applications/solvers/immersedBoundary/simpleIbFoam/UEqn.H
View file

@ -1,10 +0,0 @@
// Solve the Momentum equation
tmp<fvVectorMatrix> UEqn
(
fvm::div(phi, U)
+ turbulence->divDevReff()
);
UEqn().relax();
solve(UEqn() == -fvc::grad(p));

42
applications/solvers/immersedBoundary/simpleIbFoam/createFields.H
View file

@ -1,42 +0,0 @@
Info<< "Reading field p\n" << endl;
volScalarField p
(
IOobject
(
"p",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
Info<< "Reading field U\n" << endl;
volVectorField U
(
IOobject
(
"U",
runTime.timeName(),
mesh,
IOobject::MUST_READ,
IOobject::AUTO_WRITE
),
mesh
);
# include "createPhi.H"
label pRefCell = 0;
scalar pRefValue = 0.0;
setRefCell(p, simple.dict(), pRefCell, pRefValue);
mesh.schemesDict().setFluxRequired(p.name());
singlePhaseTransportModel laminarTransport(U, phi);
autoPtr<incompressible::RASModel> turbulence
(
incompressible::RASModel::New(U, phi, laminarTransport)
);

41
applications/solvers/immersedBoundary/simpleIbFoam/pEqn.H
View file

@ -1,41 +0,0 @@
{
volScalarField AU = UEqn().A();
U = UEqn().H()/AU;
// Immersed boundary update
U.correctBoundaryConditions();
UEqn.clear();
phi = faceIbMask*(fvc::interpolate(U) & mesh.Sf());
// Adjust immersed boundary fluxes
immersedBoundaryAdjustPhi(phi, U);
adjustPhi(phi, U, p);
// Non-orthogonal pressure corrector loop
while (simple.correctNonOrthogonal())
{
fvScalarMatrix pEqn
(
fvm::laplacian(1.0/AU, p) == fvc::div(phi)
);
pEqn.setReference(pRefCell, pRefValue);
pEqn.solve();
if (simple.finalNonOrthogonalIter())
{
phi -= pEqn.flux();
}
}
# include "immersedBoundaryContinuityErrs.H"
// Explicitly relax pressure for momentum corrector
p.relax();
// Momentum corrector
U -= fvc::grad(p)/AU;
U.correctBoundaryConditions();
}

87
applications/solvers/immersedBoundary/simpleIbFoam/simpleIbFoam.C
View file

@ -1,87 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Application
simpleIbFoam
Description
Steady-state solver for incompressible, turbulent flow
with immersed boundary support.
Author
Hrvoje Jasak, Wikki Ltd. All rights reserved
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "singlePhaseTransportModel.H"
#include "RASModel.H"
#include "simpleControl.H"
#include "immersedBoundaryFvPatch.H"
#include "immersedBoundaryAdjustPhi.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
simpleControl simple(mesh);
# include "createIbMasks.H"
# include "createFields.H"
# include "initContinuityErrs.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< "\nStarting time loop\n" << endl;
while (simple.loop())
{
Info<< "Time = " << runTime.timeName() << nl << endl;
// Pressure-velocity SIMPLE corrector
{
# include "UEqn.H"
# include "pEqn.H"
}
turbulence->correct();
runTime.write();
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
}
Info<< "End\n" << endl;
return 0;
}
// ************************************************************************* //

2
applications/solvers/incompressible/MRFSimpleFoam/createFields.H
View file

@ -12,7 +12,7 @@
mesh
);
Info << "Reading field U\n" << endl;
Info<< "Reading field U\n" << endl;
volVectorField U
(
IOobject

32
applications/solvers/incompressible/pimpleDyMFoam/correctPhi.H
View file

@ -1,34 +1,6 @@
{
# include "continuityErrs.H"
wordList pcorrTypes
(
p.boundaryField().size(),
zeroGradientFvPatchScalarField::typeName
);
for (label i=0; i<p.boundaryField().size(); i++)
{
if (p.boundaryField()[i].fixesValue())
{
pcorrTypes[i] = fixedValueFvPatchScalarField::typeName;
}
}
volScalarField pcorr
(
IOobject
(
"pcorr",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh,
dimensionedScalar("pcorr", p.dimensions(), 0.0),
pcorrTypes
);
volScalarField pcorr("pcorr", p);
pcorr *= 0;
// Initialise flux with interpolated velocity
phi = fvc::interpolate(U) & mesh.Sf();

4
applications/solvers/multiphase/interPhaseChangeFoam/createFields.H
View file

@ -104,7 +104,6 @@
label pdRefCell = 0;
scalar pdRefValue = 0.0;
setRefCell(pd, pimple.dict(), pdRefCell, pdRefValue);
mesh.schemesDict().setFluxRequired(pd.name());
scalar pRefValue = 0.0;
@ -128,3 +127,6 @@
(
incompressible::turbulenceModel::New(U, phi, twoPhaseProperties())
);
mesh.schemesDict().setFluxRequired(pd.name());
mesh.schemesDict().setFluxRequired(alpha1.name());

104
applications/solvers/surfaceTracking/freeSurface/freeSurface.C
View file

@ -187,13 +187,13 @@ freeSurface::freeSurface
// Set point normal correction patches
boolList& correction = aMesh().correctPatchPointNormals();
forAll(pointNormalsCorrectionPatches_, patchI)
forAll (pointNormalsCorrectionPatches_, patchI)
{
word patchName = pointNormalsCorrectionPatches_[patchI];
label patchID = aMesh().boundary().findPatchID(patchName);
if(patchID == -1)
if (patchID == -1)
{
FatalErrorIn
(
@ -212,7 +212,7 @@ freeSurface::freeSurface
// Detect the free surface patch
forAll (mesh().boundary(), patchI)
{
if(mesh().boundary()[patchI].name() == "freeSurface")
if (mesh().boundary()[patchI].name() == "freeSurface")
{
aPatchID_ = patchI;
@ -221,7 +221,7 @@ freeSurface::freeSurface
}
}
if(aPatchID() == -1)
if (aPatchID() == -1)
{
FatalErrorIn("freeSurface::freeSurface(...)")
<< "Free surface patch not defined. Please make sure that "
@ -235,7 +235,7 @@ freeSurface::freeSurface
{
forAll (mesh().boundary(), patchI)
{
if(mesh().boundary()[patchI].name() == "freeSurfaceShadow")
if (mesh().boundary()[patchI].name() == "freeSurfaceShadow")
{
bPatchID_ = patchI;
@ -244,7 +244,7 @@ freeSurface::freeSurface
}
}
if(bPatchID() == -1)
if (bPatchID() == -1)
{
FatalErrorIn("freeSurface::freeSurface(...)")
<< "Free surface shadow patch not defined. "
@ -257,7 +257,7 @@ freeSurface::freeSurface
// Mark free surface boundary points
// which belonge to processor patches
forAll(aMesh().boundary(), patchI)
forAll (aMesh().boundary(), patchI)
{
if
(
@ -268,7 +268,7 @@ freeSurface::freeSurface
const labelList& patchPoints =
aMesh().boundary()[patchI].pointLabels();
forAll(patchPoints, pointI)
forAll (patchPoints, pointI)
{
motionPointsMask()[patchPoints[pointI]] = -1;
}
@ -277,7 +277,7 @@ freeSurface::freeSurface
// Mark fixed free surface boundary points
forAll(fixedFreeSurfacePatches_, patchI)
forAll (fixedFreeSurfacePatches_, patchI)
{
label fixedPatchID =
aMesh().boundary().findPatchID
@ -285,7 +285,7 @@ freeSurface::freeSurface
fixedFreeSurfacePatches_[patchI]
);
if(fixedPatchID == -1)
if (fixedPatchID == -1)
{
FatalErrorIn("freeSurface::freeSurface(...)")
<< "Wrong faPatch name in the fixedFreeSurfacePatches list"
@ -296,7 +296,7 @@ freeSurface::freeSurface
const labelList& patchPoints =
aMesh().boundary()[fixedPatchID].pointLabels();
forAll(patchPoints, pointI)
forAll (patchPoints, pointI)
{
motionPointsMask()[patchPoints[pointI]] = 0;
}
@ -305,7 +305,7 @@ freeSurface::freeSurface
// Mark free-surface boundary point
// at the axis of 2-D axisymmetic cases
forAll(aMesh().boundary(), patchI)
forAll (aMesh().boundary(), patchI)
{
if
(
@ -316,7 +316,7 @@ freeSurface::freeSurface
const wedgeFaPatch& wedgePatch =
refCast<const wedgeFaPatch>(aMesh().boundary()[patchI]);
if(wedgePatch.axisPoint() > -1)
if (wedgePatch.axisPoint() > -1)
{
motionPointsMask()[wedgePatch.axisPoint()] = 0;
@ -357,7 +357,7 @@ freeSurface::~freeSurface()
void freeSurface::updateDisplacementDirections()
{
if(normalMotionDir())
if (normalMotionDir())
{
// Update point displacement correction
pointsDisplacementDir() = aMesh().pointAreaNormals();
@ -365,9 +365,9 @@ void freeSurface::updateDisplacementDirections()
// Correcte point displacement direction
// at the "centerline" symmetryPlane which represents the axis
// of an axisymmetric case
forAll(aMesh().boundary(), patchI)
forAll (aMesh().boundary(), patchI)
{
if(aMesh().boundary()[patchI].type() == wedgeFaPatch::typeName)
if (aMesh().boundary()[patchI].type() == wedgeFaPatch::typeName)
{
const wedgeFaPatch& wedgePatch =
refCast<const wedgeFaPatch>(aMesh().boundary()[patchI]);
@ -377,12 +377,12 @@ void freeSurface::updateDisplacementDirections()
label centerLinePatchID =
aMesh().boundary().findPatchID("centerline");
if(centerLinePatchID != -1)
if (centerLinePatchID != -1)
{
const labelList& pointLabels =
aMesh().boundary()[centerLinePatchID].pointLabels();
forAll(pointLabels, pointI)
forAll (pointLabels, pointI)
{
vector dir =
pointsDisplacementDir()[pointLabels[pointI]];
@ -449,8 +449,8 @@ bool freeSurface::correctPoints()
{
for
(
int freeSurfCorr=0;
freeSurfCorr<nFreeSurfCorr_;
int freeSurfCorr = 0;
freeSurfCorr < nFreeSurfCorr_;
freeSurfCorr++
)
{
@ -463,7 +463,7 @@ bool freeSurface::correctPoints()
bool freeSurface::movePoints(const scalarField& interfacePhi)
{
pointField newMeshPoints = mesh().points();
pointField newMeshPoints = mesh().allPoints();
scalarField sweptVolCorr =
interfacePhi
@ -535,7 +535,7 @@ bool freeSurface::movePoints(const scalarField& interfacePhi)
newMeshPoints[meshPointsA[pointI]] += displacement[pointI];
}
if(twoFluids_)
if (twoFluids_)
{
const labelList& meshPointsB =
mesh().boundaryMesh()[bPatchID_].meshPoints();
@ -554,12 +554,12 @@ bool freeSurface::movePoints(const scalarField& interfacePhi)
// Update total displacement field
if(totalDisplacementPtr_ && (curTimeIndex_ < DB().timeIndex()))
if (totalDisplacementPtr_ && (curTimeIndex_ < DB().timeIndex()))
{
FatalErrorIn("freeSurface::movePoints()")
<< "Total displacement of free surface points "
<< "from previous time step is not absorbed by the mesh."
<< abort(FatalError);
<< "from previous time step is not absorbed by the mesh."
<< abort(FatalError);
}
else if (curTimeIndex_ < DB().timeIndex())
{
@ -585,7 +585,7 @@ bool freeSurface::movePoints(const scalarField& interfacePhi)
// Move correctedFvPatchField fvSubMeshes
forAll(U().boundaryField(), patchI)
forAll (U().boundaryField(), patchI)
{
if
(
@ -615,7 +615,7 @@ bool freeSurface::movePoints(const scalarField& interfacePhi)
}
}
forAll(p().boundaryField(), patchI)
forAll (p().boundaryField(), patchI)
{
if
(
@ -651,7 +651,7 @@ bool freeSurface::movePoints(const scalarField& interfacePhi)
bool freeSurface::moveMeshPointsForOldFreeSurfDisplacement()
{
if(totalDisplacementPtr_)
if (totalDisplacementPtr_)
{
pointField newPoints = mesh().points();
@ -708,7 +708,7 @@ bool freeSurface::moveMeshPointsForOldFreeSurfDisplacement()
totalDisplacement()/DB().deltaT().value()
);
if(twoFluids_)
if (twoFluids_)
{
const labelList& meshPointsB =
mesh().boundaryMesh()[bPatchID()].meshPoints();
@ -764,7 +764,7 @@ bool freeSurface::moveMeshPointsForOldFreeSurfDisplacement()
motionUaPatch ==
totalDisplacement()/DB().deltaT().value();
if(twoFluids_)
if (twoFluids_)
{
const labelList& meshPointsB =
mesh().boundaryMesh()[bPatchID()].meshPoints();
@ -808,7 +808,7 @@ bool freeSurface::moveMeshPointsForOldFreeSurfDisplacement()
// Move correctedFvPatchField fvSubMeshes
forAll(U().boundaryField(), patchI)
forAll (U().boundaryField(), patchI)
{
if
(
@ -838,7 +838,7 @@ bool freeSurface::moveMeshPointsForOldFreeSurfDisplacement()
}
}
forAll(p().boundaryField(), patchI)
forAll (p().boundaryField(), patchI)
{
if
(
@ -994,7 +994,7 @@ bool freeSurface::moveMeshPoints()
// Move correctedFvPatchField fvSubMeshes
forAll(U().boundaryField(), patchI)
forAll (U().boundaryField(), patchI)
{
if
(
@ -1024,7 +1024,7 @@ bool freeSurface::moveMeshPoints()
}
}
forAll(p().boundaryField(), patchI)
forAll (p().boundaryField(), patchI)
{
if
(
@ -1068,7 +1068,7 @@ void freeSurface::updateBoundaryConditions()
void freeSurface::updateVelocity()
{
if(twoFluids())
if (twoFluids())
{
vectorField nA = mesh().boundary()[aPatchID()].nf();
@ -1141,7 +1141,7 @@ void freeSurface::updateVelocity()
vectorField tangentialSurfaceTensionForce(nA.size(), vector::zero);
if(!cleanInterface())
if (!cleanInterface())
{
tangentialSurfaceTensionForce =
surfaceTensionGrad()().internalField();
@ -1262,7 +1262,7 @@ void freeSurface::updateVelocity()
vectorField tangentialSurfaceTensionForce(nA.size(), vector::zero);
if(!cleanInterface())
if (!cleanInterface())
{
tangentialSurfaceTensionForce =
surfaceTensionGrad()().internalField();
@ -1357,7 +1357,7 @@ void freeSurface::updatePressure()
vectorField nA = mesh().boundary()[aPatchID()].nf();
if(twoFluids())
if (twoFluids())
{
scalarField pA =
interpolatorBA().faceInterpolate
@ -1371,7 +1371,7 @@ void freeSurface::updatePressure()
<< ", max = " << gMax(K)
<< ", average = " << gAverage(K) << endl << flush;
if(cleanInterface())
if (cleanInterface())
{
// pA -= cleanInterfaceSurfTension().value()*(K - gAverage(K));
pA -= cleanInterfaceSurfTension().value()*K;
@ -1422,7 +1422,7 @@ void freeSurface::updatePressure()
<< ", max = " << gMax(K) << ", average = " << gAverage(K)
<< endl;
if(cleanInterface())
if (cleanInterface())
{
// pA -= cleanInterfaceSurfTension().value()*(K - gAverage(K));
pA -= cleanInterfaceSurfTension().value()*K;
@ -1474,7 +1474,7 @@ void freeSurface::updateSurfaceFlux()
void freeSurface::updateSurfactantConcentration()
{
if(!cleanInterface())
if (!cleanInterface())
{
Info << "Correct surfactant concentration" << endl << flush;
@ -1493,7 +1493,7 @@ void freeSurface::updateSurfactantConcentration()
);
if(surfactant().soluble())
if (surfactant().soluble())
{
const scalarField& C =
mesh().boundary()[aPatchID()]
@ -1541,7 +1541,7 @@ void freeSurface::updateSurfactantConcentration()
*log(1.0 - surfactantConcentration()
/surfactant().surfactSaturatedConc());
if(neg(min(surfaceTension().internalField())))
if (neg(min(surfaceTension().internalField())))
{
FatalErrorIn
(
@ -1555,7 +1555,7 @@ void freeSurface::updateSurfactantConcentration()
void freeSurface::correctUsBoundaryConditions()
{
forAll(Us().boundaryField(), patchI)
forAll (Us().boundaryField(), patchI)
{
if
(
@ -1570,7 +1570,7 @@ void freeSurface::correctUsBoundaryConditions()
label ngbPolyPatchID =
aMesh().boundary()[patchI].ngbPolyPatchIndex();
if(ngbPolyPatchID != -1)
if (ngbPolyPatchID != -1)
{
if
(
@ -1646,7 +1646,7 @@ vector freeSurface::totalSurfaceTensionForce() const
vectorField surfTensionForces(n.size(), vector::zero);
if(cleanInterface())
if (cleanInterface())
{
surfTensionForces =
S*cleanInterfaceSurfTension().value()
@ -1678,7 +1678,7 @@ void freeSurface::initializeControlPointsPosition()
scalarField sweptVol(faces.size(), 0.0);
forAll(faces, faceI)
forAll (faces, faceI)
{
sweptVol[faceI] = -faces[faceI].sweptVol(points, newPoints);
}
@ -1690,7 +1690,7 @@ void freeSurface::initializeControlPointsPosition()
faceArea[faceI] = faces[faceI].normal(newPoints);
}
forAll(deltaH, faceI)
forAll (deltaH, faceI)
{
deltaH[faceI] = sweptVol[faceI]/
(faceArea[faceI] & facesDisplacementDir()[faceI]);
@ -1704,9 +1704,9 @@ scalar freeSurface::maxCourantNumber()
{
scalar CoNum = 0;
if(cleanInterface())
if (cleanInterface())
{
const scalarField& dE =aMesh().lPN();
const scalarField& dE = aMesh().lPN();
CoNum = gMax
(
@ -1781,7 +1781,7 @@ void freeSurface::writeVTKControlPoints()
<< "DATASET POLYDATA" << nl
<< "POINTS " << controlPoints().size() << " float" << nl;
forAll(controlPoints(), pointI)
forAll (controlPoints(), pointI)
{
mps << controlPoints()[pointI].x() << ' '
<< controlPoints()[pointI].y() << ' '
@ -1792,7 +1792,7 @@ void freeSurface::writeVTKControlPoints()
mps << "VERTICES " << controlPoints().size() << ' '
<< controlPoints().size()*2 << nl;
forAll(controlPoints(), pointI)
forAll (controlPoints(), pointI)
{
mps << 1 << ' ' << pointI << nl;
}

7
applications/solvers/surfaceTracking/freeSurface/freeSurface.H
View file

@ -135,6 +135,7 @@ class freeSurface
//- Interface smoothing at the begining of time step
Switch smoothing_;
// Demand-driven data
//- Patch to patch interpolation object which deals with
@ -229,6 +230,7 @@ class freeSurface
const vector& axis
) const;
public:
// Declare name of the class and it's debug switch
@ -247,9 +249,8 @@ public:
);
// Destructor
~freeSurface();
//- Destructor
virtual ~freeSurface();
// Member Functions

14
applications/solvers/surfaceTracking/interTrackFoam/interTrackFoam.C
View file

@ -41,24 +41,26 @@ Description
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createDynamicFvMesh.H"
pimpleControl pimple(mesh);
# include "createFields.H"
# include "createTimeControls.H"
# include "initContinuityErrs.H"
# include "CourantNo.H"
# include "setInitialDeltaT.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info << "\nStarting time loop\n" << endl;
for (runTime++; !runTime.end(); runTime++)
while (runTime.run())
{
Info << "Time = " << runTime.value() << endl << endl;
# include "readTimeControls.H"
# include "CourantNo.H"
//# include "setSurfaceStabilityDeltaT.H"
interface.moveMeshPointsForOldFreeSurfDisplacement();
@ -116,6 +118,8 @@ int main(int argc, char *argv[])
{
phi -= pEqn.flux();
}
p.relax();
}
# include "continuityErrs.H"

34
applications/solvers/compressible/steadyUniversalFoam/universalContinuityErrs.H → applications/solvers/surfaceTracking/interTrackFoam/setSurfaceStabilityDeltaT.H
View file

@ -22,28 +22,34 @@ License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Global
continuityErrs
setSurfaceStabilityDeltaT
Description
Calculates and prints the continuity errors.
Reset the timestep to maintain a constant maximum courant Number.
Reduction of time-step is immediate, but increase is damped to avoid
unstable oscillations.
\*---------------------------------------------------------------------------*/
if (adjustTimeStep)
{
volScalarField contErr = fvc::ddt(rho) + fvc::div(phi);
scalar maxDeltaTFact = maxCo/(CoNum + SMALL);
scalar deltaTFact = min(min(maxDeltaTFact, 1.0 + 0.1*maxDeltaTFact), 1.2);
sumLocalContErr = runTime.deltaT().value()*
mag(contErr)().weightedAverage(mesh.V()).value();
runTime.setDeltaT
(
Foam::min
(
interface.surfStabCrit().value(),
Foam::min
(
deltaTFact*runTime.deltaT().value(),
maxDeltaT
)
)
);
globalContErr = runTime.deltaT().value()*
contErr.weightedAverage(mesh.V()).value();
cumulativeContErr += globalContErr;
Info<< "time step continuity errors : sum local = " << sumLocalContErr
<< ", global = " << globalContErr
<< ", cumulative = " << cumulativeContErr
<< endl;
Info<< "deltaT = " << runTime.deltaT().value() << endl;
}
// ************************************************************************* //

12
applications/utilities/immersedBoundary/refineImmersedBoundaryMesh/Make/options
View file

@ -1,13 +1,13 @@
EXE_INC = \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicMesh/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/dynamicMesh/dynamicMesh/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundaryDynamicMesh/lnInclude \
EXE_LIBS = \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \
-lsampling \
-ldynamicMesh \
-limmersedBoundary
-limmersedBoundary \
-limmersedBoundaryDynamicMesh

8
applications/utilities/immersedBoundary/refineImmersedBoundaryMesh/refineImmersedBoundaryMesh.C
View file

@ -38,7 +38,6 @@ int main(int argc, char *argv[])
{
argList::validOptions.insert("ibCells", "");
argList::validOptions.insert("ibCellCells", "");
argList::validOptions.insert("ibCellCellFaces", "");
# include "setRootCase.H"
@ -63,13 +62,6 @@ int main(int argc, char *argv[])
refineImmersedBoundaryMesh::IB_CELL_CELLS
);
}
else if (args.optionFound("ibCellCellFaces"))
{
rc = rib.refinementCells
(
refineImmersedBoundaryMesh::IB_CELL_CELL_FACES
);
}
else
{
FatalErrorIn(args.executable())

2
applications/utilities/immersedBoundary/writeIbMasks/Make/options
View file

@ -1,9 +1,11 @@
EXE_INC = \
-I$(LIB_SRC)/postProcessing/postCalc \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude
EXE_LIBS = \
$(FOAM_LIBBIN)/postCalc.o \
-lfiniteVolume \
-lmeshTools \
-lsurfMesh \

126
applications/utilities/immersedBoundary/writeIbMasks/writeIbMasks.C
View file

@ -29,32 +29,128 @@ Description
\*---------------------------------------------------------------------------*/
#include "fvCFD.H"
#include "calc.H"
#include "fvc.H"
#include "fvMatrices.H"
#include "immersedBoundaryFvPatch.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
int main(int argc, char *argv[])
void Foam::calc(const argList& args, const Time& runTime, const fvMesh& mesh)
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
# include "createIbMasks.H"
Info<< nl << "Calculating gamma" << endl;
volScalarField gamma
(
IOobject
(
"gamma",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
mesh,
dimensionedScalar("one", dimless, 1)
);
gamma.internalField() = mesh.V()/mesh.cellVolumes();
gamma.write();
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Report minimal live cell volume
scalar minLiveGamma = GREAT;
label minLiveCell = -1;
const scalarField& gammaIn = gamma.internalField();
Info<< "Time = " << runTime.timeName() << nl << endl;
forAll (mesh.boundary(), patchI)
{
if (isA<immersedBoundaryFvPatch>(mesh.boundary()[patchI]))
{
const immersedBoundaryFvPatch& ibPatch =
refCast<const immersedBoundaryFvPatch>
(
mesh.boundary()[patchI]
);
cellIbMask.write();
cellIbMaskExt.write();
const labelList& ibCells = ibPatch.ibPolyPatch().ibCells();
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
forAll (ibCells, dcI)
{
if (gammaIn[ibCells[dcI]] < minLiveGamma)
{
minLiveGamma = gammaIn[ibCells[dcI]];
minLiveCell = ibCells[dcI];
}
}
}
}
Info<< "End\n" << endl;
Info<< "Min live cell " << minLiveCell
<< " gamma = " << minLiveGamma
<< endl;
return 0;
Info<< nl << "Calculating sGamma" << endl;
surfaceScalarField sGamma
(
IOobject
(
"sGamma",
runTime.timeName(),
mesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE
),
mesh,
dimensionedScalar("one", dimless, 0)
);
const surfaceScalarField& magSf = mesh.magSf();
const scalarField magFaceAreas = mag(mesh.faceAreas());
sGamma.internalField() =
magSf.internalField()/
scalarField::subField(magFaceAreas, mesh.nInternalFaces());
forAll (mesh.boundary(), patchI)
{
if (!isA<immersedBoundaryFvPatch>(mesh.boundary()[patchI]))
{
sGamma.boundaryField()[patchI] =
magSf.boundaryField()[patchI]/
mesh.boundary()[patchI].patchSlice(magFaceAreas);
gamma.boundaryField()[patchI] =
sGamma.boundaryField()[patchI];
}
}
sGamma.write();
// Check consistency of face area vectors
Info<< nl << "Calculating divSf" << endl;
volVectorField divSf
(
"divSf",
fvc::div(mesh.Sf())
);
divSf.write();
// Check divergence of face area vectors
scalarField magDivSf = mag(divSf)().internalField();
Info<< "Face areas divergence (min, max, average): "
<< "(" << min(magDivSf) << " " << max(magDivSf)
<< " " << average(magDivSf) << ")"
<< endl;
if (max(magDivSf) > 1e-9)
{
WarningIn("writeIbMasks")
<< "Possible problem with immersed boundary face area vectors: "
<< max(magDivSf)
<< endl;
}
Info<< endl;
}

4
applications/utilities/mesh/manipulation/createPatch/createPatch.C
View file

@ -344,7 +344,7 @@ void syncPoints
(
isA<processorPolyPatch>(pp)
&& pp.nPoints() > 0
&& refCast<const processorPolyPatch>(pp).owner()
&& refCast<const processorPolyPatch>(pp).master()
)
{
const processorPolyPatch& procPatch =
@ -381,7 +381,7 @@ void syncPoints
(
isA<processorPolyPatch>(pp)
&& pp.nPoints() > 0
&& !refCast<const processorPolyPatch>(pp).owner()
&& !refCast<const processorPolyPatch>(pp).master()
)
{
const processorPolyPatch& procPatch =

6
applications/utilities/mesh/manipulation/moveDynamicMesh/moveDynamicMesh.C
View file

@ -82,7 +82,11 @@ int main(int argc, char *argv[])
)
);
magMeshCo.write();
if (runTime.outputTime())
{
Info<< "Writing mesh motion Co number" << endl;
magMeshCo.write();
}
}
runTime.write();

11
applications/utilities/mesh/manipulation/renumberMesh/renumberMesh.C
View file

@ -338,30 +338,39 @@ autoPtr<mapPolyMesh> reorderMesh
(
new mapPolyMesh
(
mesh, //const polyMesh& mesh,
mesh, // const polyMesh& mesh,
mesh.nPoints(), // nOldPoints,
mesh.nFaces(), // nOldFaces,
mesh.nCells(), // nOldCells,
identity(mesh.nPoints()), // pointMap,
List<objectMap>(0), // pointsFromPoints,
faceOrder, // faceMap,
List<objectMap>(0), // facesFromPoints,
List<objectMap>(0), // facesFromEdges,
List<objectMap>(0), // facesFromFaces,
cellOrder, // cellMap,
List<objectMap>(0), // cellsFromPoints,
List<objectMap>(0), // cellsFromEdges,
List<objectMap>(0), // cellsFromFaces,
List<objectMap>(0), // cellsFromCells,
identity(mesh.nPoints()), // reversePointMap,
reverseFaceOrder, // reverseFaceMap,
reverseCellOrder, // reverseCellMap,
labelHashSet(0), // flipFaceFlux,
patchPointMap, // patchPointMap,
labelListList(0), // pointZoneMap,
labelListList(0), // faceZonePointMap,
labelListList(0), // faceZoneFaceMap,
labelListList(0), // cellZoneMap,
boolList(mesh.boundaryMesh().size(), false), // resetPatchFlag
pointField(0), // preMotionPoints,
patchStarts, // oldPatchStarts,
oldPatchNMeshPoints // oldPatchNMeshPoints

9
applications/utilities/parallelProcessing/decomposePar/Make/files
View file

@ -1,12 +1,3 @@
decomposeMesh.C
decomposePar.C
domainDecomposition.C
distributeCells.C
faMeshDecomposition.C
fvFieldDecomposer.C
faFieldDecomposer.C
pointFieldDecomposer.C
tetPointFieldDecomposer.C
lagrangianFieldDecomposer.C
EXE = $(FOAM_APPBIN)/decomposePar

2
applications/utilities/parallelProcessing/decomposePar/Make/options
View file

@ -1,5 +1,6 @@
EXE_INC = \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decomposeReconstruct/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/finiteArea/lnInclude \
@ -8,6 +9,7 @@ EXE_INC = \
EXE_LIBS = \
-ldecompositionMethods \
-ldecomposeReconstruct \
-lmeshTools \
-lfiniteVolume \
-lfiniteArea \

38
applications/utilities/parallelProcessing/decomposePar/decomposePar.C
View file

@ -235,26 +235,45 @@ int main(int argc, char *argv[])
}
Info<< "Create mesh for region " << regionName << endl;
domainDecomposition mesh
fvMesh mesh
(
IOobject
(
regionName,
runTime.timeName(),
runTime
runTime,
IOobject::MUST_READ,
IOobject::NO_WRITE
)
);
domainDecomposition meshDecomp
(
mesh,
IOdictionary
(
IOobject
(
"decomposeParDict",
runTime.system(),
mesh,
IOobject::MUST_READ,
IOobject::NO_WRITE
)
)
);
// Decompose the mesh
if (!decomposeFieldsOnly)
{
mesh.decomposeMesh(filterPatches);
meshDecomp.decomposeMesh(filterPatches);
mesh.writeDecomposition();
meshDecomp.writeDecomposition();
if (writeCellDist)
{
const labelList& procIds = mesh.cellToProc();
const labelList& procIds = meshDecomp.cellToProc();
// Write the decomposition as labelList for use with 'manual'
// decomposition method.
@ -345,7 +364,7 @@ int main(int argc, char *argv[])
// Construct the point fields
// ~~~~~~~~~~~~~~~~~~~~~~~~~~
pointMesh pMesh(mesh);
const pointMesh& pMesh = pointMesh::New(mesh);
PtrList<pointScalarField> pointScalarFields;
readFields(pMesh, objects, pointScalarFields);
@ -595,7 +614,7 @@ int main(int argc, char *argv[])
Info<< endl;
// Split the fields over processors
for (label procI = 0; procI < mesh.nProcs(); procI++)
for (label procI = 0; procI < meshDecomp.nProcs(); procI++)
{
Info<< "Processor " << procI << ": field transfer" << endl;
@ -632,6 +651,7 @@ int main(int argc, char *argv[])
processorDb
)
);
procMesh.syncUpdateMesh();
labelIOList cellProcAddressing
(
@ -872,7 +892,7 @@ int main(int argc, char *argv[])
{
const fileName timePath = processorDb.timePath();
if (copyUniform || mesh.distributed())
if (copyUniform || meshDecomp.distributed())
{
cp
(
@ -962,7 +982,7 @@ int main(int argc, char *argv[])
Info << endl;
// Split the fields over processors
for (label procI = 0; procI < mesh.nProcs(); procI++)
for (label procI = 0; procI < meshDecomp.nProcs(); procI++)
{
Info<< "Processor " << procI
<< ": finite area field transfer" << endl;

694
applications/utilities/parallelProcessing/decomposePar/domainDecomposition.C
View file

@ -1,694 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "domainDecomposition.H"
#include "foamTime.H"
#include "dictionary.H"
#include "labelIOList.H"
#include "processorPolyPatch.H"
#include "fvMesh.H"
#include "OSspecific.H"
#include "Map.H"
#include "globalMeshData.H"
#include "DynamicList.H"
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
domainDecomposition::domainDecomposition(const IOobject& io)
:
fvMesh(io),
decompositionDict_
(
IOobject
(
"decomposeParDict",
time().system(),
*this,
IOobject::MUST_READ,
IOobject::NO_WRITE
)
),
nProcs_(readInt(decompositionDict_.lookup("numberOfSubdomains"))),
distributed_(false),
cellToProc_(nCells()),
procPointAddressing_(nProcs_),
procFaceAddressing_(nProcs_),
nInternalProcFaces_(nProcs_),
nLiveProcFaces_(nProcs_),
procCellAddressing_(nProcs_),
procBoundaryAddressing_(nProcs_),
procPatchSize_(nProcs_),
procPatchStartIndex_(nProcs_),
procNeighbourProcessors_(nProcs_),
procProcessorPatchSize_(nProcs_),
procProcessorPatchStartIndex_(nProcs_),
globallySharedPoints_(0),
cyclicParallel_(false)
{
if (decompositionDict_.found("distributed"))
{
distributed_ = Switch(decompositionDict_.lookup("distributed"));
}
}
// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * //
domainDecomposition::~domainDecomposition()
{}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
bool domainDecomposition::writeDecomposition()
{
Info<< "\nConstructing processor meshes" << endl;
// Make a lookup map for globally shared points
Map<label> sharedPointLookup(2*globallySharedPoints_.size());
forAll (globallySharedPoints_, pointi)
{
sharedPointLookup.insert(globallySharedPoints_[pointi], pointi);
}
// Mark point/faces/cells that are in zones. Bad coding - removed
// HJ, 31/Mar/2009
label totProcFaces = 0;
label maxProcPatches = 0;
label maxProcFaces = 0;
// Note: get cellLevel and pointLevel. Avoid checking whether they exist or
// not by hand. If they don't exist, simpy assume that the level is 0
const labelIOList globalCellLevel
(
IOobject
(
"cellLevel",
this->facesInstance(),
polyMesh::meshSubDir,
*this,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
),
labelList(nCells(), 0)
);
const labelIOList globalPointLevel
(
IOobject
(
"pointLevel",
this->facesInstance(),
polyMesh::meshSubDir,
*this,
IOobject::READ_IF_PRESENT,
IOobject::NO_WRITE
),
labelList(nPoints(), 0)
);
// Write out the meshes
for (label procI = 0; procI < nProcs_; procI++)
{
// Create processor points
const labelList& curPointLabels = procPointAddressing_[procI];
// Access list of all points in the mesh. HJ, 27/Mar/2009
const pointField& meshPoints = allPoints();
labelList pointLookup(meshPoints.size(), -1);
pointField procPoints(curPointLabels.size());
forAll (curPointLabels, pointi)
{
procPoints[pointi] = meshPoints[curPointLabels[pointi]];
pointLookup[curPointLabels[pointi]] = pointi;
}
// Create processor faces
const labelList& curFaceLabels = procFaceAddressing_[procI];
// Access list of all faces in the mesh. HJ, 27/Mar/2009
const faceList& meshFaces = allFaces();
labelList faceLookup(meshFaces.size(), -1);
faceList procFaces(curFaceLabels.size());
forAll (curFaceLabels, facei)
{
// Mark the original face as used
// Remember to decrement the index by one (turning index)
// HJ, 5/Dec/2001
label curF = mag(curFaceLabels[facei]) - 1;
faceLookup[curF] = facei;
// get the original face
labelList origFaceLabels;
if (curFaceLabels[facei] >= 0)
{
// face not turned
origFaceLabels = meshFaces[curF];
}
else
{
origFaceLabels = meshFaces[curF].reverseFace();
}
// translate face labels into local point list
face& procFaceLabels = procFaces[facei];
procFaceLabels.setSize(origFaceLabels.size());
forAll (origFaceLabels, pointi)
{
procFaceLabels[pointi] = pointLookup[origFaceLabels[pointi]];
}
}
// Create cell lookup
labelList cellLookup(nCells(), -1);
const labelList& curCellLabels = procCellAddressing_[procI];
forAll (curCellLabels, cellI)
{
cellLookup[curCellLabels[cellI]] = cellI;
}
// Get complete owner-neighour addressing in the mesh
const labelList& own = faceOwner();
const labelList& nei = faceNeighbour();
// Calculate owner and neighbour list
// Owner list is sized to number of live faces
// Neighbour list is sized to number of internal faces
labelList procOwner(nLiveProcFaces_[procI]);
// Note: loop over owner, not all faces: sizes are different
forAll (procOwner, faceI)
{
// Remember to decrement the index by one (turning index)
// HJ, 28/Mar/2009
label curF = mag(curFaceLabels[faceI]) - 1;
if (curFaceLabels[faceI] >= 0)
{
procOwner[faceI] = cellLookup[own[curF]];
}
else
{
procOwner[faceI] = cellLookup[nei[curF]];
}
}
labelList procNeighbour(nInternalProcFaces_[procI]);
// Note: loop over neighbour, not all faces: sizes are different
forAll (procNeighbour, faceI)
{
// Remember to decrement the index by one (turning index)
// HJ, 28/Mar/2009
label curF = mag(curFaceLabels[faceI]) - 1;
if (curFaceLabels[faceI] >= 0)
{
procNeighbour[faceI] = cellLookup[nei[curF]];
}
else
{
procNeighbour[faceI] = cellLookup[own[curF]];
}
}
// Create processor cells. No longer needed: using owner and neighbour
// HJ, 28/Mar/2009
// const cellList& meshCells = cells();
// cellList procCells(curCellLabels.size());
// forAll (curCellLabels, cellI)
// {
// const labelList& origCellLabels = meshCells[curCellLabels[cellI]];
// cell& curCell = procCells[cellI];
// curCell.setSize(origCellLabels.size());
// forAll (origCellLabels, cellFaceI)
// {
// curCell[cellFaceI] = faceLookup[origCellLabels[cellFaceI]];
// }
// }
// Create processor mesh without a boundary
fileName processorCasePath
(
time().caseName()/fileName(word("processor") + Foam::name(procI))
);
// make the processor directory
mkDir(time().rootPath()/processorCasePath);
// create a database
Time processorDb
(
Time::controlDictName,
time().rootPath(),
processorCasePath,
"system",
"constant",
true
);
// Create the mesh
polyMesh procMesh
(
IOobject
(
this->polyMesh::name(), // region name of undecomposed mesh
pointsInstance(),
processorDb
),
xferMove(procPoints),
xferMove(procFaces),
xferMove(procOwner),
xferMove(procNeighbour),
false // Do not sync par
// xferMove(procCells) // Old-fashioned mesh creation using cells.
// Deprecated: using face owner/neighbour
// HJ, 30/Mar/2009
);
// Create processor boundary patches
const labelList& curBoundaryAddressing = procBoundaryAddressing_[procI];
const labelList& curPatchSizes = procPatchSize_[procI];
const labelList& curPatchStarts = procPatchStartIndex_[procI];
const labelList& curNeighbourProcessors =
procNeighbourProcessors_[procI];
const labelList& curProcessorPatchSizes =
procProcessorPatchSize_[procI];
const labelList& curProcessorPatchStarts =
procProcessorPatchStartIndex_[procI];
const polyPatchList& meshPatches = boundaryMesh();
List<polyPatch*> procPatches
(
curPatchSizes.size()
+ curProcessorPatchSizes.size(),
reinterpret_cast<polyPatch*>(0)
);
label nPatches = 0;
forAll (curPatchSizes, patchi)
{
procPatches[nPatches] =
meshPatches[curBoundaryAddressing[patchi]].clone
(
procMesh.boundaryMesh(),
nPatches,
curPatchSizes[patchi],
curPatchStarts[patchi]
).ptr();
nPatches++;
}
forAll (curProcessorPatchSizes, procPatchI)
{
procPatches[nPatches] =
new processorPolyPatch
(
word("procBoundary") + Foam::name(procI)
+ word("to")
+ Foam::name(curNeighbourProcessors[procPatchI]),
curProcessorPatchSizes[procPatchI],
curProcessorPatchStarts[procPatchI],
nPatches,
procMesh.boundaryMesh(),
procI,
curNeighbourProcessors[procPatchI]
);
nPatches++;
}
// Add boundary patches
procMesh.addPatches(procPatches);
// Create and add zones
// Note:
// This coding was all wrong, as each point/face/cell may only
// belong to a single zone.
// Additionally, ordering of points/faces/cells in the processor mesh
// needs to match the ordering in global mesh zones. Full rewrite.
// HJ, 30/Mar/2009
// Create zones if needed
if
(
pointZones().size() > 0
|| faceZones().size() > 0
|| cellZones().size() > 0
)
{
// Point zones
List<pointZone*> procPz(pointZones().size());
{
const pointZoneMesh& pz = pointZones();
// Go through all the zoned points and find out if they
// belong to a processor. If so, add it to the zone as
// necessary
forAll (pz, zoneI)
{
const labelList& zonePoints = pz[zoneI];
labelList procZonePoints(zonePoints.size());
label nZonePoints = 0;
forAll (zonePoints, pointI)
{
const label localIndex =
pointLookup[zonePoints[pointI]];
if (localIndex >= 0)
{
// Point live on processor: add to zone
procZonePoints[nZonePoints] = localIndex;
nZonePoints++;
}
}
// Add the zone
procZonePoints.setSize(nZonePoints);
procPz[zoneI] = new pointZone
(
pz[zoneI].name(),
procZonePoints,
zoneI,
procMesh.pointZones()
);
}
}
// Face zones
List<faceZone*> procFz(faceZones().size());
{
const faceZoneMesh& fz = faceZones();
forAll (fz, zoneI)
{
const labelList& zoneFaces = fz[zoneI];
const boolList& flipMap = fz[zoneI].flipMap();
// Go through all the zoned faces and find out if they
// belong to a processor. If so, add it to the zone as
// necessary
labelList procZoneFaces(zoneFaces.size());
boolList procZoneFaceFlips(zoneFaces.size());
label nZoneFaces = 0;
forAll (zoneFaces, faceI)
{
const label localIndex = faceLookup[zoneFaces[faceI]];
if (localIndex >= 0)
{
// Face is present on the processor
// Add the face to the zone
procZoneFaces[nZoneFaces] = localIndex;
// Grab the flip
bool flip = flipMap[faceI];
if (curFaceLabels[localIndex] < 0)
{
flip = !flip;
}
procZoneFaceFlips[nZoneFaces] = flip;
nZoneFaces++;
}
}
// Add the zone
procZoneFaces.setSize(nZoneFaces);
procZoneFaceFlips.setSize(nZoneFaces);
procFz[zoneI] = new faceZone
(
fz[zoneI].name(),
procZoneFaces,
procZoneFaceFlips,
zoneI,
procMesh.faceZones()
);
}
}
// Cell zones
List<cellZone*> procCz(cellZones().size());
{
const cellZoneMesh& cz = cellZones();
// Go through all the zoned cells and find out if they
// belong to a processor. If so, add it to the zone as
// necessary
forAll (cz, zoneI)
{
const labelList& zoneCells = cz[zoneI];
labelList procZoneCells(zoneCells.size());
label nZoneCells = 0;
forAll (zoneCells, cellI)
{
const label localIndex = cellLookup[zoneCells[cellI]];
if (localIndex >= 0)
{
procZoneCells[nZoneCells] = localIndex;
nZoneCells++;
}
}
// Add the zone
procZoneCells.setSize(nZoneCells);
procCz[zoneI] = new cellZone
(
cz[zoneI].name(),
procZoneCells,
zoneI,
procMesh.cellZones()
);
}
}
// Add zones
procMesh.addZones(procPz, procFz, procCz);
}
// Set the precision of the points data to 10
IOstream::defaultPrecision(10);
procMesh.write();
Info<< endl
<< "Processor " << procI << nl
<< " Number of cells = " << procMesh.nCells()
<< endl;
label nBoundaryFaces = 0;
label nProcPatches = 0;
label nProcFaces = 0;
forAll (procMesh.boundaryMesh(), patchi)
{
if
(
procMesh.boundaryMesh()[patchi].type()
== processorPolyPatch::typeName
)
{
const processorPolyPatch& ppp =
refCast<const processorPolyPatch>
(
procMesh.boundaryMesh()[patchi]
);
Info<< " Number of faces shared with processor "
<< ppp.neighbProcNo() << " = " << ppp.size() << endl;
nProcPatches++;
nProcFaces += ppp.size();
}
else
{
nBoundaryFaces += procMesh.boundaryMesh()[patchi].size();
}
}
Info<< " Number of processor patches = " << nProcPatches << nl
<< " Number of processor faces = " << nProcFaces << nl
<< " Number of boundary faces = " << nBoundaryFaces << endl;
totProcFaces += nProcFaces;
maxProcPatches = max(maxProcPatches, nProcPatches);
maxProcFaces = max(maxProcFaces, nProcFaces);
// create and write the addressing information
labelIOList pointProcAddressing
(
IOobject
(
"pointProcAddressing",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
procPointAddressing_[procI]
);
pointProcAddressing.write();
labelIOList faceProcAddressing
(
IOobject
(
"faceProcAddressing",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
procFaceAddressing_[procI]
);
faceProcAddressing.write();
labelIOList cellProcAddressing
(
IOobject
(
"cellProcAddressing",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
procCellAddressing_[procI]
);
cellProcAddressing.write();
labelIOList boundaryProcAddressing
(
IOobject
(
"boundaryProcAddressing",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
procBoundaryAddressing_[procI]
);
boundaryProcAddressing.write();
// Create and write cellLevel and pointLevel information
const unallocLabelList& cellMap = cellProcAddressing;
labelIOList procCellLevel
(
IOobject
(
"cellLevel",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
labelList(globalCellLevel, cellMap)
);
procCellLevel.write();
const unallocLabelList& pointMap = pointProcAddressing;
labelIOList procPointLevel
(
IOobject
(
"pointLevel",
procMesh.facesInstance(),
procMesh.meshSubDir,
procMesh,
IOobject::NO_READ,
IOobject::NO_WRITE
),
labelList(globalPointLevel, pointMap)
);
procPointLevel.write();
}
Info<< nl
<< "Number of processor faces = " << totProcFaces/2 << nl
<< "Max number of processor patches = " << maxProcPatches << nl
<< "Max number of faces between processors = " << maxProcFaces
<< endl;
return true;
}
// ************************************************************************* //

4
applications/utilities/parallelProcessing/decomposePar/readFields.C
View file

@ -48,7 +48,7 @@ void Foam::readFields
// Construct the vol scalar fields
fields.setSize(fieldObjects.size());
label fieldi=0;
label fieldI = 0;
for
(
IOobjectList::iterator iter = fieldObjects.begin();
@ -58,7 +58,7 @@ void Foam::readFields
{
fields.set
(
fieldi++,
fieldI++,
new GeoField
(
*iter(),

6
applications/utilities/parallelProcessing/reconstructPar/Make/files
View file

@ -1,10 +1,4 @@
processorMeshes.C
processorFaMeshes.C
fvFieldReconstructor.C
faFieldReconstructor.C
pointFieldReconstructor.C
tetPointFieldReconstructor.C
reconstructLagrangianPositions.C
reconstructPar.C
EXE = $(FOAM_APPBIN)/reconstructPar

7
applications/utilities/parallelProcessing/reconstructPar/Make/options
View file

@ -1,12 +1,17 @@
EXE_INC = \
-I$(LIB_SRC)/decompositionMethods/decompositionMethods/lnInclude \
-I$(LIB_SRC)/decompositionMethods/decomposeReconstruct/lnInclude \
-I$(LIB_SRC)/meshTools/lnInclude \
-I$(LIB_SRC)/finiteVolume/lnInclude \
-I$(LIB_SRC)/finiteArea/lnInclude \
-I$(LIB_SRC)/lagrangian/basic/lnInclude \
-I$(LIB_SRC)/tetFiniteElement/lnInclude
EXE_LIBS = \
-ldecompositionMethods \
-ldecomposeReconstruct \
-lmeshTools \
-lfiniteVolume \
-lfiniteArea \
-llagrangian \
-lmeshTools \
-ltetFiniteElement

640
applications/utilities/parallelProcessing/reconstructPar/faFieldReconstructorReconstructFields.C
View file

@ -1,640 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "faFieldReconstructor.H"
#include "foamTime.H"
#include "PtrList.H"
#include "faPatchFields.H"
#include "emptyFaPatch.H"
#include "emptyFaPatchField.H"
#include "emptyFaePatchField.H"
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class Type>
Foam::tmp<Foam::GeometricField<Type, Foam::faPatchField, Foam::areaMesh> >
Foam::faFieldReconstructor::reconstructFaAreaField
(
const IOobject& fieldIoObject
)
{
// Read the field for all the processors
PtrList<GeometricField<Type, faPatchField, areaMesh> > procFields
(
procMeshes_.size()
);
forAll (procMeshes_, procI)
{
procFields.set
(
procI,
new GeometricField<Type, faPatchField, areaMesh>
(
IOobject
(
fieldIoObject.name(),
procMeshes_[procI].time().timeName(),
procMeshes_[procI](),
IOobject::MUST_READ,
IOobject::NO_WRITE
),
procMeshes_[procI]
)
);
}
// Create the internalField
Field<Type> internalField(mesh_.nFaces());
// Create the patch fields
PtrList<faPatchField<Type> > patchFields(mesh_.boundary().size());
// Create global mesh patchs starts
labelList gStarts(mesh_.boundary().size(), -1);
if (mesh_.boundary().size() > 0)
{
gStarts[0] = mesh_.nInternalEdges();
}
for(label i=1; i<mesh_.boundary().size(); i++)
{
gStarts[i] = gStarts[i-1] + mesh_.boundary()[i-1].labelList::size();
}
forAll (procMeshes_, procI)
{
const GeometricField<Type, faPatchField, areaMesh>& procField =
procFields[procI];
// Set the face values in the reconstructed field
internalField.rmap
(
procField.internalField(),
faceProcAddressing_[procI]
);
// Set the boundary patch values in the reconstructed field
labelList starts(procMeshes_[procI].boundary().size(), -1);
if(procMeshes_[procI].boundary().size() > 0)
{
starts[0] = procMeshes_[procI].nInternalEdges();
}
for(label i=1; i<procMeshes_[procI].boundary().size(); i++)
{
starts[i] =
starts[i-1]
+ procMeshes_[procI].boundary()[i-1].labelList::size();
}
forAll(boundaryProcAddressing_[procI], patchI)
{
// Get patch index of the original patch
const label curBPatch = boundaryProcAddressing_[procI][patchI];
// Get addressing slice for this patch
// const labelList::subList cp =
// procMeshes_[procI].boundary()[patchI].patchSlice
// (
// edgeProcAddressing_[procI]
// );
const labelList::subList cp =
labelList::subList
(
edgeProcAddressing_[procI],
procMeshes_[procI].boundary()[patchI].size(),
starts[patchI]
);
// check if the boundary patch is not a processor patch
if (curBPatch >= 0)
{
// Regular patch. Fast looping
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
faPatchField<Type>::New
(
procField.boundaryField()[patchI],
mesh_.boundary()[curBPatch],
DimensionedField<Type, areaMesh>::null(),
faPatchFieldReconstructor
(
mesh_.boundary()[curBPatch].size(),
procField.boundaryField()[patchI].size()
)
)
);
}
const label curPatchStart = gStarts[curBPatch];
// mesh_.boundary()[curBPatch].start();
labelList reverseAddressing(cp.size());
forAll(cp, edgeI)
{
// Subtract one to take into account offsets for
// face direction.
// reverseAddressing[edgeI] = cp[edgeI] - 1 - curPatchStart;
reverseAddressing[edgeI] = cp[edgeI] - curPatchStart;
}
patchFields[curBPatch].rmap
(
procField.boundaryField()[patchI],
reverseAddressing
);
}
else
{
const Field<Type>& curProcPatch =
procField.boundaryField()[patchI];
// In processor patches, there's a mix of internal faces (some
// of them turned) and possible cyclics. Slow loop
forAll(cp, edgeI)
{
// Subtract one to take into account offsets for
// face direction.
// label curE = cp[edgeI] - 1;
label curE = cp[edgeI];
// Is the face on the boundary?
if (curE >= mesh_.nInternalEdges())
{
// label curBPatch = mesh_.boundary().whichPatch(curE);
label curBPatch = -1;
forAll (mesh_.boundary(), pI)
{
if
(
curE >= gStarts[pI]
&& curE <
(
gStarts[pI]
+ mesh_.boundary()[pI].labelList::size()
)
)
{
curBPatch = pI;
}
}
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
faPatchField<Type>::New
(
mesh_.boundary()[curBPatch].type(),
mesh_.boundary()[curBPatch],
DimensionedField<Type, areaMesh>::null()
)
);
}
// add the edge
// label curPatchEdge =
// mesh_.boundary()
// [curBPatch].whichEdge(curE);
label curPatchEdge = curE - gStarts[curBPatch];
patchFields[curBPatch][curPatchEdge] =
curProcPatch[edgeI];
}
}
}
}
}
forAll(mesh_.boundary(), patchI)
{
// add empty patches
if
(
typeid(mesh_.boundary()[patchI]) == typeid(emptyFaPatch)
&& !patchFields(patchI)
)
{
patchFields.set
(
patchI,
faPatchField<Type>::New
(
emptyFaPatchField<Type>::typeName,
mesh_.boundary()[patchI],
DimensionedField<Type, areaMesh>::null()
)
);
}
}
// Now construct and write the field
// setting the internalField and patchFields
return tmp<GeometricField<Type, faPatchField, areaMesh> >
(
new GeometricField<Type, faPatchField, areaMesh>
(
IOobject
(
fieldIoObject.name(),
mesh_.time().timeName(),
mesh_(),
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh_,
procFields[0].dimensions(),
internalField,
patchFields
)
);
}
template<class Type>
Foam::tmp<Foam::GeometricField<Type, Foam::faePatchField, Foam::edgeMesh> >
Foam::faFieldReconstructor::reconstructFaEdgeField
(
const IOobject& fieldIoObject
)
{
// Read the field for all the processors
PtrList<GeometricField<Type, faePatchField, edgeMesh> > procFields
(
procMeshes_.size()
);
forAll (procMeshes_, procI)
{
procFields.set
(
procI,
new GeometricField<Type, faePatchField, edgeMesh>
(
IOobject
(
fieldIoObject.name(),
procMeshes_[procI].time().timeName(),
procMeshes_[procI](),
IOobject::MUST_READ,
IOobject::NO_WRITE
),
procMeshes_[procI]
)
);
}
// Create the internalField
Field<Type> internalField(mesh_.nInternalEdges());
// Create the patch fields
PtrList<faePatchField<Type> > patchFields(mesh_.boundary().size());
labelList gStarts(mesh_.boundary().size(), -1);
if(mesh_.boundary().size() > 0)
{
gStarts[0] = mesh_.nInternalEdges();
}
for(label i=1; i<mesh_.boundary().size(); i++)
{
gStarts[i] = gStarts[i-1] + mesh_.boundary()[i-1].labelList::size();
}
forAll (procMeshes_, procI)
{
const GeometricField<Type, faePatchField, edgeMesh>& procField =
procFields[procI];
// Set the face values in the reconstructed field
// It is necessary to create a copy of the addressing array to
// take care of the face direction offset trick.
//
{
labelList curAddr(edgeProcAddressing_[procI]);
// forAll (curAddr, addrI)
// {
// curAddr[addrI] -= 1;
// }
internalField.rmap
(
procField.internalField(),
curAddr
);
}
// Set the boundary patch values in the reconstructed field
labelList starts(procMeshes_[procI].boundary().size(), -1);
if(procMeshes_[procI].boundary().size() > 0)
{
starts[0] = procMeshes_[procI].nInternalEdges();
}
for(label i=1; i<procMeshes_[procI].boundary().size(); i++)
{
starts[i] =
starts[i-1]
+ procMeshes_[procI].boundary()[i-1].labelList::size();
}
forAll(boundaryProcAddressing_[procI], patchI)
{
// Get patch index of the original patch
const label curBPatch = boundaryProcAddressing_[procI][patchI];
// Get addressing slice for this patch
// const labelList::subList cp =
// procMeshes_[procI].boundary()[patchI].patchSlice
// (
// faceProcAddressing_[procI]
// );
const labelList::subList cp =
labelList::subList
(
edgeProcAddressing_[procI],
procMeshes_[procI].boundary()[patchI].size(),
starts[patchI]
);
// check if the boundary patch is not a processor patch
if (curBPatch >= 0)
{
// Regular patch. Fast looping
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
faePatchField<Type>::New
(
procField.boundaryField()[patchI],
mesh_.boundary()[curBPatch],
DimensionedField<Type, edgeMesh>::null(),
faPatchFieldReconstructor
(
mesh_.boundary()[curBPatch].size(),
procField.boundaryField()[patchI].size()
)
)
);
}
const label curPatchStart = gStarts[curBPatch];
// mesh_.boundary()[curBPatch].start();
labelList reverseAddressing(cp.size());
forAll(cp, edgeI)
{
// Subtract one to take into account offsets for
// face direction.
// reverseAddressing[faceI] = cp[faceI] - 1 - curPatchStart;
reverseAddressing[edgeI] = cp[edgeI] - curPatchStart;
}
patchFields[curBPatch].rmap
(
procField.boundaryField()[patchI],
reverseAddressing
);
}
else
{
const Field<Type>& curProcPatch =
procField.boundaryField()[patchI];
// In processor patches, there's a mix of internal faces (some
// of them turned) and possible cyclics. Slow loop
forAll(cp, edgeI)
{
// label curF = cp[edgeI] - 1;
label curE = cp[edgeI];
// Is the face turned the right side round
if (curE >= 0)
{
// Is the face on the boundary?
if (curE >= mesh_.nInternalEdges())
{
// label curBPatch =
// mesh_.boundary().whichPatch(curF);
label curBPatch = -1;
forAll (mesh_.boundary(), pI)
{
if
(
curE >= gStarts[pI]
&& curE <
(
gStarts[pI]
+ mesh_.boundary()[pI].labelList::size()
)
)
{
curBPatch = pI;
}
}
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
faePatchField<Type>::New
(
mesh_.boundary()[curBPatch].type(),
mesh_.boundary()[curBPatch],
DimensionedField<Type, edgeMesh>
::null()
)
);
}
// add the face
// label curPatchFace =
// mesh_.boundary()
// [curBPatch].whichEdge(curF);
label curPatchEdge = curE - gStarts[curBPatch];
patchFields[curBPatch][curPatchEdge] =
curProcPatch[edgeI];
}
else
{
// Internal face
internalField[curE] = curProcPatch[edgeI];
}
}
}
}
}
}
forAll(mesh_.boundary(), patchI)
{
// add empty patches
if
(
typeid(mesh_.boundary()[patchI]) == typeid(emptyFaPatch)
&& !patchFields(patchI)
)
{
patchFields.set
(
patchI,
faePatchField<Type>::New
(
emptyFaePatchField<Type>::typeName,
mesh_.boundary()[patchI],
DimensionedField<Type, edgeMesh>::null()
)
);
}
}
// Now construct and write the field
// setting the internalField and patchFields
return tmp<GeometricField<Type, faePatchField, edgeMesh> >
(
new GeometricField<Type, faePatchField, edgeMesh>
(
IOobject
(
fieldIoObject.name(),
mesh_.time().timeName(),
mesh_(),
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh_,
procFields[0].dimensions(),
internalField,
patchFields
)
);
}
// Reconstruct and write all area fields
template<class Type>
void Foam::faFieldReconstructor::reconstructFaAreaFields
(
const IOobjectList& objects
)
{
const word& fieldClassName =
GeometricField<Type, faPatchField, areaMesh>::typeName;
IOobjectList fields = objects.lookupClass(fieldClassName);
if (fields.size())
{
Info<< " Reconstructing " << fieldClassName << "s\n" << endl;
for
(
IOobjectList::const_iterator fieldIter = fields.begin();
fieldIter != fields.end();
++fieldIter
)
{
Info << " " << fieldIter()->name() << endl;
reconstructFaAreaField<Type>(*fieldIter())().write();
}
Info<< endl;
}
}
// Reconstruct and write all edge fields
template<class Type>
void Foam::faFieldReconstructor::reconstructFaEdgeFields
(
const IOobjectList& objects
)
{
const word& fieldClassName =
GeometricField<Type, faePatchField, edgeMesh>::typeName;
IOobjectList fields = objects.lookupClass(fieldClassName);
if (fields.size())
{
Info<< " Reconstructing " << fieldClassName << "s\n" << endl;
for
(
IOobjectList::const_iterator fieldIter = fields.begin();
fieldIter != fields.end();
++fieldIter
)
{
Info<< " " << fieldIter()->name() << endl;
reconstructFaEdgeField<Type>(*fieldIter())().write();
}
Info<< endl;
}
}
// ************************************************************************* //

196
applications/utilities/parallelProcessing/reconstructPar/fvFieldReconstructor.H
View file

@ -1,196 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Class
Foam::fvFieldReconstructor
Description
FV volume and surface field reconstructor.
SourceFiles
fvFieldReconstructor.C
fvFieldReconstructorReconstructFields.C
\*---------------------------------------------------------------------------*/
#ifndef fvFieldReconstructor_H
#define fvFieldReconstructor_H
#include "PtrList.H"
#include "fvMesh.H"
#include "IOobjectList.H"
#include "fvPatchFieldMapper.H"
#include "labelIOList.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
/*---------------------------------------------------------------------------*\
Class fvFieldReconstructor Declaration
\*---------------------------------------------------------------------------*/
class fvFieldReconstructor
{
// Private data
//- Reconstructed mesh reference
fvMesh& mesh_;
//- List of processor meshes
const PtrList<fvMesh>& procMeshes_;
//- List of processor face addressing lists
const PtrList<labelIOList>& faceProcAddressing_;
//- List of processor cell addressing lists
const PtrList<labelIOList>& cellProcAddressing_;
//- List of processor boundary addressing lists
const PtrList<labelIOList>& boundaryProcAddressing_;
// Private Member Functions
//- Disallow default bitwise copy construct
fvFieldReconstructor(const fvFieldReconstructor&);
//- Disallow default bitwise assignment
void operator=(const fvFieldReconstructor&);
public:
class fvPatchFieldReconstructor
:
public fvPatchFieldMapper
{
label size_;
label sizeBeforeMapping_;
public:
// Constructors
//- Construct given size
fvPatchFieldReconstructor
(
const label size,
const label sizeBeforeMapping
)
:
size_(size),
sizeBeforeMapping_(sizeBeforeMapping)
{}
// Member functions
virtual label size() const
{
return size_;
}
virtual label sizeBeforeMapping() const
{
return sizeBeforeMapping_;
}
virtual bool direct() const
{
return true;
}
virtual const unallocLabelList& directAddressing() const
{
return unallocLabelList::null();
}
};
// Constructors
//- Construct from components
fvFieldReconstructor
(
fvMesh& mesh,
const PtrList<fvMesh>& procMeshes,
const PtrList<labelIOList>& faceProcAddressing,
const PtrList<labelIOList>& cellProcAddressing,
const PtrList<labelIOList>& boundaryProcAddressing
);
// Member Functions
//- Reconstruct volume field
template<class Type>
tmp<GeometricField<Type, fvPatchField, volMesh> >
reconstructFvVolumeField
(
const IOobject& fieldIoObject
);
//- Reconstruct surface field
template<class Type>
tmp<GeometricField<Type, fvsPatchField, surfaceMesh> >
reconstructFvSurfaceField
(
const IOobject& fieldIoObject
);
//- Reconstruct and write all/selected volume fields
template<class Type>
void reconstructFvVolumeFields
(
const IOobjectList& objects,
const HashSet<word>& selectedFields
);
//- Reconstruct and write all/selected volume fields
template<class Type>
void reconstructFvSurfaceFields
(
const IOobjectList& objects,
const HashSet<word>& selectedFields
);
};
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace Foam
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#ifdef NoRepository
# include "fvFieldReconstructorReconstructFields.C"
#endif
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //

526
applications/utilities/parallelProcessing/reconstructPar/fvFieldReconstructorReconstructFields.C
View file

@ -1,526 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "fvFieldReconstructor.H"
#include "foamTime.H"
#include "PtrList.H"
#include "fvPatchFields.H"
#include "emptyFvPatch.H"
#include "emptyFvPatchField.H"
#include "emptyFvsPatchField.H"
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class Type>
Foam::tmp<Foam::GeometricField<Type, Foam::fvPatchField, Foam::volMesh> >
Foam::fvFieldReconstructor::reconstructFvVolumeField
(
const IOobject& fieldIoObject
)
{
// Read the field for all the processors
PtrList<GeometricField<Type, fvPatchField, volMesh> > procFields
(
procMeshes_.size()
);
forAll (procMeshes_, procI)
{
procFields.set
(
procI,
new GeometricField<Type, fvPatchField, volMesh>
(
IOobject
(
fieldIoObject.name(),
procMeshes_[procI].time().timeName(),
procMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
),
procMeshes_[procI]
)
);
}
// Create the internalField
Field<Type> internalField(mesh_.nCells());
// Create the patch fields
PtrList<fvPatchField<Type> > patchFields(mesh_.boundary().size());
forAll (procMeshes_, procI)
{
const GeometricField<Type, fvPatchField, volMesh>& procField =
procFields[procI];
// Set the cell values in the reconstructed field
internalField.rmap
(
procField.internalField(),
cellProcAddressing_[procI]
);
// Set the boundary patch values in the reconstructed field
forAll (boundaryProcAddressing_[procI], patchI)
{
// Get patch index of the original patch
const label curBPatch = boundaryProcAddressing_[procI][patchI];
// Get addressing slice for this patch
const labelList::subList cp =
procMeshes_[procI].boundary()[patchI].patchSlice
(
faceProcAddressing_[procI]
);
// check if the boundary patch is not a processor patch
if (curBPatch >= 0)
{
// Regular patch. Fast looping
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
fvPatchField<Type>::New
(
procField.boundaryField()[patchI],
mesh_.boundary()[curBPatch],
DimensionedField<Type, volMesh>::null(),
fvPatchFieldReconstructor
(
mesh_.boundary()[curBPatch].size(),
procField.boundaryField()[patchI].size()
)
)
);
}
const label curPatchStart =
mesh_.boundaryMesh()[curBPatch].start();
labelList reverseAddressing(cp.size());
forAll (cp, faceI)
{
// Subtract one to take into account offsets for
// face direction.
reverseAddressing[faceI] = cp[faceI] - 1 - curPatchStart;
}
patchFields[curBPatch].rmap
(
procField.boundaryField()[patchI],
reverseAddressing
);
}
else
{
const Field<Type>& curProcPatch =
procField.boundaryField()[patchI];
// In processor patches, there's a mix of internal faces (some
// of them turned) and possible cyclics. Slow loop
forAll (cp, faceI)
{
// Subtract one to take into account offsets for
// face direction.
label curF = cp[faceI] - 1;
// Is the face on the boundary?
if (curF >= mesh_.nInternalFaces())
{
label curBPatch =
mesh_.boundaryMesh().whichPatch(curF);
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
fvPatchField<Type>::New
(
mesh_.boundary()[curBPatch].type(),
mesh_.boundary()[curBPatch],
DimensionedField<Type, volMesh>::null()
)
);
}
// add the face
label curPatchFace =
mesh_.boundaryMesh()
[curBPatch].whichFace(curF);
patchFields[curBPatch][curPatchFace] =
curProcPatch[faceI];
}
}
}
}
}
forAll (mesh_.boundary(), patchI)
{
// add empty patches
if
(
isType<emptyFvPatch>(mesh_.boundary()[patchI])
&& !patchFields(patchI)
)
{
patchFields.set
(
patchI,
fvPatchField<Type>::New
(
emptyFvPatchField<Type>::typeName,
mesh_.boundary()[patchI],
DimensionedField<Type, volMesh>::null()
)
);
}
}
// Now construct and write the field
// setting the internalField and patchFields
return tmp<GeometricField<Type, fvPatchField, volMesh> >
(
new GeometricField<Type, fvPatchField, volMesh>
(
IOobject
(
fieldIoObject.name(),
mesh_.time().timeName(),
mesh_,
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh_,
procFields[0].dimensions(),
internalField,
patchFields
)
);
}
template<class Type>
Foam::tmp<Foam::GeometricField<Type, Foam::fvsPatchField, Foam::surfaceMesh> >
Foam::fvFieldReconstructor::reconstructFvSurfaceField
(
const IOobject& fieldIoObject
)
{
// Read the field for all the processors
PtrList<GeometricField<Type, fvsPatchField, surfaceMesh> > procFields
(
procMeshes_.size()
);
forAll (procMeshes_, procI)
{
procFields.set
(
procI,
new GeometricField<Type, fvsPatchField, surfaceMesh>
(
IOobject
(
fieldIoObject.name(),
procMeshes_[procI].time().timeName(),
procMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
),
procMeshes_[procI]
)
);
}
// Create the internalField
Field<Type> internalField(mesh_.nInternalFaces());
// Create the patch fields
PtrList<fvsPatchField<Type> > patchFields(mesh_.boundary().size());
forAll (procMeshes_, procI)
{
const GeometricField<Type, fvsPatchField, surfaceMesh>& procField =
procFields[procI];
// Set the face values in the reconstructed field
// It is necessary to create a copy of the addressing array to
// take care of the face direction offset trick.
//
{
labelList curAddr(faceProcAddressing_[procI]);
forAll (curAddr, addrI)
{
curAddr[addrI] -= 1;
}
internalField.rmap
(
procField.internalField(),
curAddr
);
}
// Set the boundary patch values in the reconstructed field
forAll (boundaryProcAddressing_[procI], patchI)
{
// Get patch index of the original patch
const label curBPatch = boundaryProcAddressing_[procI][patchI];
// Get addressing slice for this patch
const labelList::subList cp =
procMeshes_[procI].boundary()[patchI].patchSlice
(
faceProcAddressing_[procI]
);
// Check if the boundary patch is not a processor patch
if (curBPatch >= 0)
{
// Regular patch. Fast looping
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
fvsPatchField<Type>::New
(
procField.boundaryField()[patchI],
mesh_.boundary()[curBPatch],
DimensionedField<Type, surfaceMesh>::null(),
fvPatchFieldReconstructor
(
mesh_.boundary()[curBPatch].size(),
procField.boundaryField()[patchI].size()
)
)
);
}
const label curPatchStart =
mesh_.boundaryMesh()[curBPatch].start();
labelList reverseAddressing(cp.size());
forAll (cp, faceI)
{
// Subtract one to take into account offsets for
// face direction.
reverseAddressing[faceI] = cp[faceI] - 1 - curPatchStart;
}
patchFields[curBPatch].rmap
(
procField.boundaryField()[patchI],
reverseAddressing
);
}
else
{
const Field<Type>& curProcPatch =
procField.boundaryField()[patchI];
// In processor patches, there's a mix of internal faces (some
// of them turned) and possible cyclics. Slow loop
forAll (cp, faceI)
{
label curF = cp[faceI] - 1;
// Is the face turned the right side round
if (curF >= 0)
{
// Is the face on the boundary?
if (curF >= mesh_.nInternalFaces())
{
label curBPatch =
mesh_.boundaryMesh().whichPatch(curF);
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
fvsPatchField<Type>::New
(
mesh_.boundary()[curBPatch].type(),
mesh_.boundary()[curBPatch],
DimensionedField<Type, surfaceMesh>
::null()
)
);
}
// add the face
label curPatchFace =
mesh_.boundaryMesh()
[curBPatch].whichFace(curF);
patchFields[curBPatch][curPatchFace] =
curProcPatch[faceI];
}
else
{
// Internal face
internalField[curF] = curProcPatch[faceI];
}
}
}
}
}
}
forAll (mesh_.boundary(), patchI)
{
// add empty patches
if
(
isType<emptyFvPatch>(mesh_.boundary()[patchI])
&& !patchFields(patchI)
)
{
patchFields.set
(
patchI,
fvsPatchField<Type>::New
(
emptyFvsPatchField<Type>::typeName,
mesh_.boundary()[patchI],
DimensionedField<Type, surfaceMesh>::null()
)
);
}
}
// Now construct and write the field
// setting the internalField and patchFields
return tmp<GeometricField<Type, fvsPatchField, surfaceMesh> >
(
new GeometricField<Type, fvsPatchField, surfaceMesh>
(
IOobject
(
fieldIoObject.name(),
mesh_.time().timeName(),
mesh_,
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh_,
procFields[0].dimensions(),
internalField,
patchFields
)
);
}
// Reconstruct and write all/selected volume fields
template<class Type>
void Foam::fvFieldReconstructor::reconstructFvVolumeFields
(
const IOobjectList& objects,
const HashSet<word>& selectedFields
)
{
const word& fieldClassName =
GeometricField<Type, fvPatchField, volMesh>::typeName;
IOobjectList fields = objects.lookupClass(fieldClassName);
if (fields.size())
{
Info<< " Reconstructing " << fieldClassName << "s\n" << endl;
forAllConstIter(IOobjectList, fields, fieldIter)
{
if
(
!selectedFields.size()
|| selectedFields.found(fieldIter()->name())
)
{
Info<< " " << fieldIter()->name() << endl;
reconstructFvVolumeField<Type>(*fieldIter())().write();
}
}
Info<< endl;
}
}
// Reconstruct and write all/selected surface fields
template<class Type>
void Foam::fvFieldReconstructor::reconstructFvSurfaceFields
(
const IOobjectList& objects,
const HashSet<word>& selectedFields
)
{
const word& fieldClassName =
GeometricField<Type, fvsPatchField, surfaceMesh>::typeName;
IOobjectList fields = objects.lookupClass(fieldClassName);
if (fields.size())
{
Info<< " Reconstructing " << fieldClassName << "s\n" << endl;
forAllConstIter(IOobjectList, fields, fieldIter)
{
if
(
!selectedFields.size()
|| selectedFields.found(fieldIter()->name())
)
{
Info<< " " << fieldIter()->name() << endl;
reconstructFvSurfaceField<Type>(*fieldIter())().write();
}
}
Info<< endl;
}
}
// ************************************************************************* //

178
applications/utilities/parallelProcessing/reconstructPar/pointFieldReconstructorReconstructFields.C
View file

@ -1,178 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "pointFieldReconstructor.H"
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
template<class Type>
Foam::tmp<Foam::GeometricField<Type, Foam::pointPatchField, Foam::pointMesh> >
Foam::pointFieldReconstructor::reconstructField(const IOobject& fieldIoObject)
{
// Read the field for all the processors
PtrList<GeometricField<Type, pointPatchField, pointMesh> > procFields
(
procMeshes_.size()
);
forAll (procMeshes_, proci)
{
procFields.set
(
proci,
new GeometricField<Type, pointPatchField, pointMesh>
(
IOobject
(
fieldIoObject.name(),
procMeshes_[proci]().time().timeName(),
procMeshes_[proci](),
IOobject::MUST_READ,
IOobject::NO_WRITE
),
procMeshes_[proci]
)
);
}
// Create the internalField
Field<Type> internalField(mesh_.size());
// Create the patch fields
PtrList<pointPatchField<Type> > patchFields(mesh_.boundary().size());
forAll (procMeshes_, proci)
{
const GeometricField<Type, pointPatchField, pointMesh>&
procField = procFields[proci];
// Get processor-to-global addressing for use in rmap
const labelList& procToGlobalAddr = pointProcAddressing_[proci];
// Set the cell values in the reconstructed field
internalField.rmap
(
procField.internalField(),
procToGlobalAddr
);
// Set the boundary patch values in the reconstructed field
forAll(boundaryProcAddressing_[proci], patchi)
{
// Get patch index of the original patch
const label curBPatch = boundaryProcAddressing_[proci][patchi];
// check if the boundary patch is not a processor patch
if (curBPatch >= 0)
{
if (!patchFields(curBPatch))
{
patchFields.set
(
curBPatch,
pointPatchField<Type>::New
(
procField.boundaryField()[patchi],
mesh_.boundary()[curBPatch],
DimensionedField<Type, pointMesh>::null(),
pointPatchFieldReconstructor
(
mesh_.boundary()[curBPatch].size(),
procField.boundaryField()[patchi].size()
)
)
);
}
patchFields[curBPatch].rmap
(
procField.boundaryField()[patchi],
patchPointAddressing_[proci][patchi]
);
}
}
}
// Construct and write the field
// setting the internalField and patchFields
return tmp<GeometricField<Type, pointPatchField, pointMesh> >
(
new GeometricField<Type, pointPatchField, pointMesh>
(
IOobject
(
fieldIoObject.name(),
mesh_().time().timeName(),
mesh_(),
IOobject::NO_READ,
IOobject::NO_WRITE
),
mesh_,
procFields[0].dimensions(),
internalField,
patchFields
)
);
}
// Reconstruct and write all point fields
template<class Type>
void Foam::pointFieldReconstructor::reconstructFields
(
const IOobjectList& objects
)
{
word fieldClassName
(
GeometricField<Type, pointPatchField, pointMesh>::typeName
);
IOobjectList fields = objects.lookupClass(fieldClassName);
if (fields.size())
{
Info<< " Reconstructing " << fieldClassName << "s\n" << endl;
for
(
IOobjectList::iterator fieldIter = fields.begin();
fieldIter != fields.end();
++fieldIter
)
{
Info<< " " << fieldIter()->name() << endl;
reconstructField<Type>(*fieldIter())().write();
}
Info<< endl;
}
}
// ************************************************************************* //

258
applications/utilities/parallelProcessing/reconstructPar/processorFaMeshes.C
View file

@ -1,258 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
\*---------------------------------------------------------------------------*/
#include "processorFaMeshes.H"
#include "foamTime.H"
// * * * * * * * * * * * * * Private Member Functions * * * * * * * * * * * //
void Foam::processorFaMeshes::read()
{
forAll (fvMeshes_, procI)
{
meshes_.set
(
procI,
new faMesh(fvMeshes_[procI])
);
pointProcAddressing_.set
(
procI,
new labelIOList
(
IOobject
(
"pointProcAddressing",
meshes_[procI].time().findInstance
(
meshes_[procI].meshDir(),
"pointProcAddressing"
),
meshes_[procI].meshSubDir,
fvMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
)
)
);
edgeProcAddressing_.set
(
procI,
new labelIOList
(
IOobject
(
"edgeProcAddressing",
meshes_[procI].time().findInstance
(
meshes_[procI].meshDir(),
"edgeProcAddressing"
),
meshes_[procI].meshSubDir,
fvMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
)
)
);
faceProcAddressing_.set
(
procI,
new labelIOList
(
IOobject
(
"faceProcAddressing",
meshes_[procI].time().findInstance
(
meshes_[procI].meshDir(),
"faceProcAddressing"
),
meshes_[procI].meshSubDir,
fvMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
)
)
);
boundaryProcAddressing_.set
(
procI,
new labelIOList
(
IOobject
(
"boundaryProcAddressing",
meshes_[procI].time().findInstance
(
meshes_[procI].meshDir(),
"faceProcAddressing"
),
meshes_[procI].meshSubDir,
fvMeshes_[procI],
IOobject::MUST_READ,
IOobject::NO_WRITE
)
)
);
}
}
// * * * * * * * * * * * * * * * * Constructors * * * * * * * * * * * * * * //
Foam::processorFaMeshes::processorFaMeshes
(
const PtrList<fvMesh>& processorFvMeshes
)
:
fvMeshes_(processorFvMeshes),
meshes_(processorFvMeshes.size()),
pointProcAddressing_(processorFvMeshes.size()),
edgeProcAddressing_(processorFvMeshes.size()),
faceProcAddressing_(processorFvMeshes.size()),
boundaryProcAddressing_(processorFvMeshes.size())
{
read();
}
// * * * * * * * * * * * * * * * Member Functions * * * * * * * * * * * * * //
// Foam::fvMesh::readUpdateState Foam::processorFaMeshes::readUpdate()
// {
// fvMesh::readUpdateState stat = fvMesh::UNCHANGED;
// forAll (databases_, procI)
// {
// // Check if any new meshes need to be read.
// fvMesh::readUpdateState procStat = meshes_[procI].readUpdate();
// /*
// if (procStat != fvMesh::UNCHANGED)
// {
// Info<< "Processor " << procI
// << " at time " << databases_[procI].timeName()
// << " detected mesh change " << procStat
// << endl;
// }
// */
// // Combine into overall mesh change status
// if (stat == fvMesh::UNCHANGED)
// {
// stat = procStat;
// }
// else
// {
// if (stat != procStat)
// {
// FatalErrorIn("processorFaMeshes::readUpdate()")
// << "Processor " << procI
// << " has a different polyMesh at time "
// << databases_[procI].timeName()
// << " compared to any previous processors." << nl
// << "Please check time " << databases_[procI].timeName()
// << " directories on all processors for consistent"
// << " mesh files."
// << exit(FatalError);
// }
// }
// }
// if
// (
// stat == fvMesh::TOPO_CHANGE
// || stat == fvMesh::TOPO_PATCH_CHANGE
// )
// {
// // Reread all meshes and addresssing
// read();
// }
// return stat;
// }
// void Foam::processorFaMeshes::reconstructPoints(fvMesh& mesh)
// {
// // Read the field for all the processors
// PtrList<pointIOField> procsPoints(meshes_.size());
// forAll (meshes_, procI)
// {
// procsPoints.set
// (
// procI,
// new pointIOField
// (
// IOobject
// (
// "points",
// meshes_[procI].time().timeName(),
// polyMesh::meshSubDir,
// meshes_[procI],
// IOobject::MUST_READ,
// IOobject::NO_WRITE
// )
// )
// );
// }
// // Create the new points
// vectorField newPoints(mesh.nPoints());
// forAll (meshes_, procI)
// {
// const vectorField& procPoints = procsPoints[procI];
// // Set the cell values in the reconstructed field
// const labelList& pointProcAddressingI = pointProcAddressing_[procI];
// if (pointProcAddressingI.size() != procPoints.size())
// {
// FatalErrorIn("processorFaMeshes")
// << "problem :"
// << " pointProcAddressingI:" << pointProcAddressingI.size()
// << " procPoints:" << procPoints.size()
// << abort(FatalError);
// }
// forAll(pointProcAddressingI, pointI)
// {
// newPoints[pointProcAddressingI[pointI]] = procPoints[pointI];
// }
// }
// mesh.movePoints(newPoints);
// mesh.write();
// }
// ************************************************************************* //

140
applications/utilities/parallelProcessing/reconstructPar/processorFaMeshes.H
View file

@ -1,140 +0,0 @@
/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | foam-extend: Open Source CFD
\\ / O peration | Version: 4.0
\\ / A nd | Web: http://www.foam-extend.org
\\/ M anipulation | For copyright notice see file Copyright
-------------------------------------------------------------------------------
License
This file is part of foam-extend.
foam-extend is free software: you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation, either version 3 of the License, or (at your
option) any later version.
foam-extend is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
General Public License for more details.
You should have received a copy of the GNU General Public License
along with foam-extend. If not, see <http://www.gnu.org/licenses/>.
Class
processorFaMeshes
Description
Container for processor mesh addressing.
Author
Zeljko Tukovic, FSB Zagreb. All rights reserved
SourceFiles
processorFaMeshes.C
\*---------------------------------------------------------------------------*/
#ifndef processorFaMeshes_H
#define processorFaMeshes_H
#include "PtrList.H"
#include "fvMesh.H"
#include "faMesh.H"
#include "IOobjectList.H"
#include "labelIOList.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
namespace Foam
{
/*---------------------------------------------------------------------------*\
Class processorFaMeshes Declaration
\*---------------------------------------------------------------------------*/
class processorFaMeshes
{
// Private data
//- List of processor finite volume meshes
const PtrList<fvMesh>& fvMeshes_;
//- List of processor finite area meshes
PtrList<faMesh> meshes_;
//- List of processor point addressing lists
PtrList<labelIOList> pointProcAddressing_;
//- List of processor face addressing lists
PtrList<labelIOList> edgeProcAddressing_;
//- List of processor cell addressing lists
PtrList<labelIOList> faceProcAddressing_;
//- List of processor boundary addressing lists
PtrList<labelIOList> boundaryProcAddressing_;
// Private Member Functions
//- Read all meshes
void read();
//- Disallow default bitwise copy construct
processorFaMeshes(const processorFaMeshes&);
//- Disallow default bitwise assignment
void operator=(const processorFaMeshes&);
public:
// Constructors
//- Construct from components
processorFaMeshes(const PtrList<fvMesh>& processorFvMeshes);
// Member Functions
//- Update the meshes based on the mesh files saved in
// time directories
// fvMesh::readUpdateState readUpdate();
//- Reconstruct point position after motion in parallel
// void reconstructPoints(faMesh& mesh);
PtrList<faMesh>& meshes()
{
return meshes_;
}
const PtrList<labelIOList>& pointProcAddressing() const
{
return pointProcAddressing_;
}
PtrList<labelIOList>& edgeProcAddressing()
{
return edgeProcAddressing_;
}
const PtrList<labelIOList>& faceProcAddressing() const
{
return faceProcAddressing_;
}
const PtrList<labelIOList>& boundaryProcAddressing() const
{
return boundaryProcAddressing_;
}
};
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
} // End namespace Foam
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
#endif
// ************************************************************************* //

Some files were not shown because too many files have changed in this diff Show more