Port update: to utilities/post-processing

applications/utilities/mesh/advanced/autoRefineMesh/autoRefineMesh.C

@@ -412,7 +412,7 @@ bool limitRefinementLevel
         }
     }
 
-    if (addCutCells.size() > 0)
+    if (addCutCells.size())
     {
         // Add cells to cutCells.
 
@@ -478,7 +478,7 @@ void doRefinement
     {
         const labelList& added = addedCells[oldCellI];
 
-        if (added.size() > 0)
+        if (added.size())
         {
             // Give all cells resulting from split the refinement level
             // of the master.
@@ -894,7 +894,7 @@ int main(int argc, char *argv[])
             << "    Selected for refinement :" << cutCells.size() << nl
             << endl;
 
-        if (cutCells.size() == 0)
+        if (cutCells.empty())
         {
             Info<< "Stopping refining since 0 cells selected to be refined ..."
                 << nl << endl;

applications/utilities/mesh/advanced/autoRefineMesh/autoRefineMeshDict

@@ -1,33 +1,26 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  1.0                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
+|   \\  /    A nd           | Web:      http://www.OpenFOAM.org               |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/
-
 FoamFile
 {
-    version         2.0;
+    version     2.0;
-    format          ascii;
+    format      ascii;
-
+    class       dictionary;
-    root            "/home/penfold/mattijs/foam/mattijs2.1/run/icoFoam";
+    object      autoRefineMeshDict;
-    case            "cavity";
-    instance        "system";
-    local           "";
-
-    class           dictionary;
-    object          autoRefineMeshDict;
 }
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 
 // Surface to keep to
-surface "plexi.ftr";
+surface         "plexi.ftr";
 
 // What is outside. These points have to be inside a cell (so not on a face!)
-outsidePoints       ((-0.99001 -0.99001 -0.99001));
+outsidePoints   ((-0.99001 -0.99001 -0.99001));
 
 
 //
@@ -51,11 +44,11 @@ curvature           0.9;
 nCutLayers 2;
 
 // Refine until smallest edge of mesh < minEdgeLen
-minEdgeLen          0.1;
+minEdgeLen      0.1;
 
 // Or until the number of cells would become more than (stops one level before
 // this)
-cellLimit           2500000;
+cellLimit       2500000;
 
 
 //
@@ -111,16 +104,16 @@ directions
 
 // refinement level difference between neighbouring cells. Set to large if
 // there is no need for a limit.
-splitLevel 2;
+splitLevel      2;
 
 // Cut purely geometric (will cut hexes through vertices) or take topology
 // into account.
-geometricCut false;
+geometricCut    false;
 
 // Whether to use hex topology. This will never cut hex through vertices.
-useHexTopology yes;
+useHexTopology  yes;
 
 // Write meshes from intermediate steps
-writeMesh true;
+writeMesh       true;
 
 // ************************************************************************* //

applications/utilities/mesh/advanced/collapseEdges/collapseEdges.C

@@ -47,7 +47,7 @@ Description
 #include "polyMesh.H"
 #include "mapPolyMesh.H"
 #include "mathematicalConstants.H"
-#include "PackedList.H"
+#include "PackedBoolList.H"
 #include "SortableList.H"
 
 using namespace Foam;
@@ -73,20 +73,17 @@ labelList getSortedEdges
         const edge& e = edges[edgeI];
 
         label fp = findIndex(f, e[0]);
-
+        label fp1 = f.fcIndex(fp);
-        label fp1 = (fp+1) % f.size();
 
         if (f[fp1] == e[1])
         {
-            // Edgei in fp-fp1 order
+            // EdgeI between fp -> fp1
             faceEdges[fp] = edgeI;
         }
         else
         {
-            // Edgei between fp-1 and fp
+            // EdgeI between fp-1 -> fp
-            label fpMin1 = (fp == 0 ? f.size()-1 : fp-1);
+            faceEdges[f.rcIndex(fp)] = edgeI;
-
-            faceEdges[fpMin1] = edgeI;
         }
     }
 
@@ -176,7 +173,7 @@ label mergeEdges
 
 
 // Return master point edge needs to be collapsed to (or -1)
-label edgeMaster(const PackedList<1>& boundaryPoint, const edge& e)
+label edgeMaster(const PackedBoolList& boundaryPoint, const edge& e)
 {
     label masterPoint = -1;
 
@@ -214,7 +211,7 @@ label edgeMaster(const PackedList<1>& boundaryPoint, const edge& e)
 label collapseSmallEdges
 (
     const polyMesh& mesh,
-    const PackedList<1>& boundaryPoint,
+    const PackedBoolList& boundaryPoint,
     const scalar minLen,
     edgeCollapser& collapser
 )
@@ -253,7 +250,7 @@ label collapseSmallEdges
 label collapseHighAspectFaces
 (
     const polyMesh& mesh,
-    const PackedList<1>& boundaryPoint,
+    const PackedBoolList& boundaryPoint,
     const scalar areaFac,
     const scalar edgeRatio,
     edgeCollapser& collapser
@@ -345,7 +342,7 @@ void set(const labelList& elems, const bool val, boolList& status)
 label simplifyFaces
 (
     const polyMesh& mesh,
-    const PackedList<1>& boundaryPoint,
+    const PackedBoolList& boundaryPoint,
     const label minSize,
     const scalar lenGap,
     edgeCollapser& collapser
@@ -461,13 +458,15 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
     scalar minLen(readScalar(IStringStream(args.additionalArgs()[0])()));
     scalar angle(readScalar(IStringStream(args.additionalArgs()[1])()));
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
-    scalar maxCos = Foam::cos(angle*180/mathematicalConstant::pi);
+    scalar maxCos = Foam::cos(angle*mathematicalConstant::pi/180.0);
 
     Info<< "Merging:" << nl
         << "    edges with length less than " << minLen << " meters" << nl
@@ -483,7 +482,7 @@ int main(int argc, char *argv[])
         const faceList& faces = mesh.faces();
 
         // Get all points on the boundary
-        PackedList<1> boundaryPoint(mesh.nPoints(), false);
+        PackedBoolList boundaryPoint(mesh.nPoints());
 
         label nIntFaces = mesh.nInternalFaces();
         for (label faceI = nIntFaces; faceI < mesh.nFaces(); faceI++)
@@ -585,8 +584,12 @@ int main(int argc, char *argv[])
         {
             runTime++;
         }
+        else
+        {
+            mesh.setInstance(oldInstance);
+        }
 
-        Info << "Writing collapsed mesh to time " << runTime.value() << endl;
+        Info<< "Writing collapsed mesh to time " << runTime.timeName() << endl;
 
         mesh.write();
     }

applications/utilities/mesh/advanced/combinePatchFaces/combinePatchFaces.C

@@ -123,8 +123,9 @@ void checkSnapMesh
         Pout<< "Checking face angles" << endl;
 
         label nOldSize = wrongFaces.size();
-        mesh.checkFaceAngles(false, &wrongFaces);
+        mesh.checkFaceAngles(false, maxConcave, &wrongFaces);
-        Pout<< "Detected additional concave " << wrongFaces.size() - nOldSize
+        Pout<< "Detected additional " << wrongFaces.size() - nOldSize
+            << " faces with concavity > " << maxConcave << " degrees"
             << endl;
     }
 
@@ -176,7 +177,7 @@ label mergePatchFaces
         List<faceList> allFaceSetsFaces(allFaceSets.size());
         forAll(allFaceSets, setI)
         {
-            allFaceSetsFaces[setI] = IndirectList<face>
+            allFaceSetsFaces[setI] = UIndirectList<face>
             (
                 mesh.faces(),
                 allFaceSets[setI]
@@ -438,26 +439,21 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
     scalar featureAngle(readScalar(IStringStream(args.additionalArgs()[0])()));
 
     scalar minCos = Foam::cos(featureAngle*mathematicalConstant::pi/180.0);
 
     scalar concaveAngle = defaultConcaveAngle;
-
+    args.optionReadIfPresent("concaveAngle", concaveAngle);
-    if (args.options().found("concaveAngle"))
-    {
-        concaveAngle = readScalar
-        (
-            IStringStream(args.options()["concaveAngle"])()
-        );
-    }
 
     scalar concaveSin = Foam::sin(concaveAngle*mathematicalConstant::pi/180.0);
 
-    bool snapMeshDict = args.options().found("snapMesh");
+    bool snapMeshDict = args.optionFound("snapMesh");
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
     Info<< "Merging all faces of a cell" << nl
         << "    - which are on the same patch" << nl
@@ -500,6 +496,11 @@ int main(int argc, char *argv[])
 
     if (nChanged > 0)
     {
+        if (overwrite)
+        {
+            mesh.setInstance(oldInstance);
+        }
+
         Info<< "Writing morphed mesh to time " << runTime.timeName() << endl;
 
         mesh.write();

applications/utilities/mesh/advanced/modifyMesh/cellSplitter.C

@@ -211,7 +211,7 @@ void Foam::cellSplitter::setRefinement
 
         // Add other pyramids
         for (label i = 1; i < cFaces.size(); i++)
-        {    
+        {
             label addedCellI =
                 meshMod.setAction
                 (
@@ -277,7 +277,7 @@ void Foam::cellSplitter::setRefinement
 
                 label index = findIndex(f0, e[0]);
 
-                bool edgeInFaceOrder = (f0[(index+1) % f0.size()] == e[1]);
+                bool edgeInFaceOrder = (f0[f0.fcIndex(index)] == e[1]);
 
                 // Check if cellI is the face owner
 
@@ -323,7 +323,7 @@ void Foam::cellSplitter::setRefinement
 
                 label index = findIndex(f1, e[0]);
 
-                bool edgeInFaceOrder = (f1[(index+1) % f1.size()] == e[1]);
+                bool edgeInFaceOrder = (f1[f1.fcIndex(index)] == e[1]);
 
                 // Check if cellI is the face owner
 
@@ -362,7 +362,7 @@ void Foam::cellSplitter::setRefinement
             }
         }
     }
-            
+
 
     //
     // Update all existing faces for split owner or neighbour.
@@ -441,7 +441,7 @@ void Foam::cellSplitter::setRefinement
 
                 label patchID, zoneID, zoneFlip;
                 getFaceInfo(faceI, patchID, zoneID, zoneFlip);
-                
+
                 meshMod.setAction
                 (
                     polyModifyFace
@@ -458,7 +458,7 @@ void Foam::cellSplitter::setRefinement
                     )
                 );
             }
-    
+
             faceUpToDate[faceI] = true;
         }
     }

applications/utilities/mesh/advanced/modifyMesh/modifyMesh.C

@@ -332,9 +332,11 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
     Info<< "Reading modifyMeshDict\n" << endl;
 
@@ -357,18 +359,21 @@ int main(int argc, char *argv[])
     (
         dict.lookup("facesToTriangulate")
     );
+
     bool cutBoundary =
-            pointsToMove.size() > 0
+    (
-         || edgesToSplit.size() > 0
+        pointsToMove.size()
-         || facesToTriangulate.size() > 0;
+     || edgesToSplit.size()
+     || facesToTriangulate.size()
+    );
 
     List<Pair<point> > edgesToCollapse(dict.lookup("edgesToCollapse"));
 
-    bool collapseEdge = edgesToCollapse.size() > 0;
+    bool collapseEdge = edgesToCollapse.size();
 
     List<Pair<point> > cellsToPyramidise(dict.lookup("cellsToSplit"));
 
-    bool cellsToSplit = cellsToPyramidise.size() > 0;
+    bool cellsToSplit = cellsToPyramidise.size();
 
     //List<Tuple<pointField,point> >
     //  cellsToCreate(dict.lookup("cellsToCreate"));
@@ -522,7 +527,7 @@ int main(int argc, char *argv[])
         Info<< nl << "There was a problem in one of the inputs in the"
             << " dictionary. Not modifying mesh." << endl;
     }
-    else if (cellToPyrCentre.size() > 0)
+    else if (cellToPyrCentre.size())
     {
         Info<< nl << "All input cells located. Modifying mesh." << endl;
 
@@ -549,12 +554,16 @@ int main(int argc, char *argv[])
         {
             runTime++;
         }
+        else
+        {
+            mesh.setInstance(oldInstance);
+        }
 
         // Write resulting mesh
-        Info << "Writing modified mesh to time " << runTime.value() << endl;
+        Info << "Writing modified mesh to time " << runTime.timeName() << endl;
         mesh.write();
     }
-    else if (edgeToPos.size() > 0)
+    else if (edgeToPos.size())
     {
         Info<< nl << "All input edges located. Modifying mesh." << endl;
 
@@ -598,9 +607,13 @@ int main(int argc, char *argv[])
         {
             runTime++;
         }
+        else
+        {
+            mesh.setInstance(oldInstance);
+        }
 
         // Write resulting mesh
-        Info << "Writing modified mesh to time " << runTime.value() << endl;
+        Info << "Writing modified mesh to time " << runTime.timeName() << endl;
         mesh.write();
     }
     else
@@ -637,9 +650,13 @@ int main(int argc, char *argv[])
         {
             runTime++;
         }
+        else
+        {
+            mesh.setInstance(oldInstance);
+        }
 
         // Write resulting mesh
-        Info << "Writing modified mesh to time " << runTime.value() << endl;
+        Info << "Writing modified mesh to time " << runTime.timeName() << endl;
         mesh.write();
     }
 

applications/utilities/mesh/advanced/modifyMesh/modifyMeshDict

@@ -1,23 +1,16 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  1.0                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
+|   \\  /    A nd           | Web:      http://www.OpenFOAM.org               |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/
-
 FoamFile
 {
-    version         2.0;
+    version     2.0;
-    format          ascii;
+    format      ascii;
-
+    class       dictionary;
-    root            "/home/penfold/mattijs/foam/mattijs2.2/run/icoFoam";
+    object      modifyMeshDict;
-    case            "cavityTut";
-    instance        "system";
-    local           "";
-
-    class           dictionary;
-    object          modifyMeshDict;
 }
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

applications/utilities/mesh/advanced/refineHexMesh/refineHexMesh.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Hex 2x2x2 refiner
+    Refines a hex mesh by 2x2x2 cell splitting.
 
 \*---------------------------------------------------------------------------*/
 
@@ -56,11 +56,14 @@ int main(int argc, char *argv[])
     argList::validArgs.append("cellSet");
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createMesh.H"
+    const word oldInstance = mesh.pointsInstance();
+
     pointMesh pMesh(mesh);
 
     word cellSetName(args.args()[1]);
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
     Info<< "Reading cells to refine from cellSet " << cellSetName
         << nl << endl;
@@ -176,6 +179,11 @@ int main(int argc, char *argv[])
     Pout<< "Refined from " << returnReduce(map().nOldCells(), sumOp<label>())
         << " to " << mesh.globalData().nTotalCells() << " cells." << nl << endl;
 
+    if (overwrite)
+    {
+        mesh.setInstance(oldInstance);
+        meshCutter.setInstance(oldInstance);
+    }
     Info<< "Writing mesh to " << runTime.timeName() << endl;
 
     mesh.write();

applications/utilities/mesh/advanced/refineWallLayer/refineWallLayer.C

@@ -23,9 +23,10 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Utility to refine cells next to patches. Takes a patchName
+    Utility to refine cells next to patches.
-    and number of layers to refine. Works out cells within these layers
+
-    and refines those in the wall-normal direction.
+    Takes a patchName and number of layers to refine. Works out cells within
+    these layers and refines those in the wall-normal direction.
 
 \*---------------------------------------------------------------------------*/
 
@@ -53,12 +54,14 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
     word patchName(args.additionalArgs()[0]);
 
     scalar weight(readScalar(IStringStream(args.additionalArgs()[1])()));
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
 
     label patchID = mesh.boundaryMesh().findPatchID(patchName);
@@ -98,11 +101,11 @@ int main(int argc, char *argv[])
     // List of cells to refine
     //
 
-    bool useSet = args.options().found("useSet");
+    bool useSet = args.optionFound("useSet");
 
     if (useSet)
     {
-        word setName(args.options()["useSet"]);
+        word setName(args.option("useSet"));
 
         Info<< "Subsetting cells to cut based on cellSet" << setName << endl
             << endl;
@@ -183,10 +186,6 @@ int main(int argc, char *argv[])
         << endl;
 
     // Transfer DynamicLists to straight ones.
-    labelList cutEdges;
-    cutEdges.transfer(allCutEdges);
-    allCutEdges.clear();
-
     scalarField cutEdgeWeights;
     cutEdgeWeights.transfer(allCutEdgeWeights);
     allCutEdgeWeights.clear();
@@ -198,7 +197,7 @@ int main(int argc, char *argv[])
         mesh,
         cutCells.toc(),     // cells candidate for cutting
         labelList(0),       // cut vertices
-        cutEdges,           // cut edges
+        allCutEdges,        // cut edges
         cutEdgeWeights      // weight on cut edges
     );
 
@@ -228,8 +227,13 @@ int main(int argc, char *argv[])
     // Update stored labels on meshCutter.
     cutter.updateMesh(morphMap());
 
+    if (overwrite)
+    {
+        mesh.setInstance(oldInstance);
+    }
+
     // Write resulting mesh
-    Info << "Writing refined morphMesh to time " << runTime.value() << endl;
+    Info << "Writing refined morphMesh to time " << runTime.timeName() << endl;
 
     mesh.write();
 

applications/utilities/mesh/advanced/refinementLevel/refinementLevel.C

@@ -110,7 +110,7 @@ int main(int argc, char *argv[])
         << " to allow for some truncation error."
         << nl << endl;
 
-    bool readLevel = args.options().found("readLevel");
+    bool readLevel = args.optionFound("readLevel");
 
     const scalarField& vols = mesh.cellVolumes();
 
@@ -206,9 +206,9 @@ int main(int argc, char *argv[])
             runTime.timeName(),
             runTime
         ),
-        mesh.points(),
+        xferCopy(mesh.points()),   // could we safely re-use the data?
-        mesh.faces(),
+        xferCopy(mesh.faces()),
-        mesh.cells()
+        xferCopy(mesh.cells())
     );
 
     // Add the boundary patches
@@ -336,7 +336,7 @@ int main(int argc, char *argv[])
     )
     {}
 
-    if (refCells.size() > 0)
+    if (refCells.size())
     {
         Info<< "Collected " << refCells.size() << " cells that need to be"
             << " refined to get closer to overall 2:1 refinement level limit"

applications/utilities/mesh/advanced/removeFaces/removeFaces.C

@@ -53,9 +53,11 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
     word setName(args.additionalArgs()[0]);
 
@@ -171,6 +173,10 @@ int main(int argc, char *argv[])
     {
         runTime++;
     }
+    else
+    {
+        mesh.setInstance(oldInstance);
+    }
 
     // Take over refinement levels and write to new time directory.
     Pout<< "Writing mesh to time " << runTime.timeName() << endl;

applications/utilities/mesh/advanced/selectCells/selectCellsDict

@@ -1,23 +1,16 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  1.0                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
-|   \\  /    A nd           | Web:      http://www.openfoam.org               |
+|   \\  /    A nd           | Web:      http://www.OpenFOAM.org               |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/
-
 FoamFile
 {
-    version         2.0;
+    version     2.0;
-    format          ascii;
+    format      ascii;
-
+    class       dictionary;
-    root            "/home/penfold/mattijs/foam/mattijs2.1/run/icoFoam";
+    object      selectCellsDict;
-    case            "cavity";
-    instance        "system";
-    local           "";
-
-    class           dictionary;
-    object          selectCellsDict;
 }
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
@@ -25,13 +18,13 @@ FoamFile
 
 // Whether to use surface. If false no surface will be read and only
 // outsidePoints/selectOutside will be used to determine cells to keep.
-useSurface false;
+useSurface      false;
 
 // Surface to keep to
-surface "plexi.ftr";
+surface         "plexi.ftr";
 
 // What is outside
-outsidePoints       ((-1 -1 -1));
+outsidePoints   ((-1 -1 -1));
 
 
 //

applications/utilities/mesh/advanced/splitCells/splitCells.C

@@ -23,10 +23,11 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Utility to split cells with flat faces. Uses a geometric cut with a plane
+    Utility to split cells with flat faces.
-    dividing the edge angle into two so might produce funny cells. For hexes
+
-    it will use by default a cut from edge onto opposite edge (i.e. purely
+    Uses a geometric cut with a plane dividing the edge angle into two so
-    topological).
+    might produce funny cells. For hexes it will use by default a cut from
+    edge onto opposite edge (i.e. purely topological).
 
     Options:
     - split cells from cellSet only
@@ -531,7 +532,9 @@ int main(int argc, char *argv[])
 
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
     scalar featureAngle(readScalar(IStringStream(args.additionalArgs()[0])()));
 
@@ -539,23 +542,19 @@ int main(int argc, char *argv[])
     scalar minCos = Foam::cos(radAngle);
     scalar minSin = Foam::sin(radAngle);
 
-    bool readSet = args.options().found("set");
+    bool readSet   = args.optionFound("set");
-    bool geometry = args.options().found("geometry");
+    bool geometry  = args.optionFound("geometry");
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
     scalar edgeTol = 0.2;
-
+    args.optionReadIfPresent("tol", edgeTol);
-    if (args.options().found("tol"))
-    {
-        edgeTol = readScalar(IStringStream(args.options()["tol"])());
-    }
 
     Info<< "Trying to split cells with internal angles > feature angle\n" << nl
         << "featureAngle      : " << featureAngle << nl
         << "edge snapping tol : " << edgeTol << nl;
     if (readSet)
     {
-        Info<< "candidate cells   : cellSet " << args.options()["set"] << nl;
+        Info<< "candidate cells   : cellSet " << args.option("set") << nl;
     }
     else
     {
@@ -583,7 +582,7 @@ int main(int argc, char *argv[])
     if (readSet)
     {
         // Read cells to cut from cellSet
-        cellSet cells(mesh, args.options()["set"]);
+        cellSet cells(mesh, args.option("set"));
 
         cellsToCut = cells;
     }
@@ -650,7 +649,7 @@ int main(int argc, char *argv[])
         // Remove cut cells from cellsToCut  (Note:only relevant if -readSet)
         forAll(cuts.cellLoops(), cellI)
         {
-            if (cuts.cellLoops()[cellI].size() > 0)
+            if (cuts.cellLoops()[cellI].size())
             {
                 //Info<< "Removing cut cell " << cellI << " from wishlist"
                 //    << endl;
@@ -691,7 +690,13 @@ int main(int argc, char *argv[])
         Info<< "Remaining:" << cellsToCut.size() << endl;
 
         // Write resulting mesh
-        Info << "Writing refined morphMesh to time " << runTime.value() << endl;
+        if (overwrite)
+        {
+            mesh.setInstance(oldInstance);
+        }
+
+        Info<< "Writing refined morphMesh to time " << runTime.timeName()
+            << endl;
 
         mesh.write();
     }

applications/utilities/mesh/conversion/Optional/Allwmake

@@ -1,28 +1,18 @@
 #!/bin/sh
+#
 # Build optional components (eg, may depend on third-party libraries)
+# -----------------------------------------------------------------------------
+cd ${0%/*} || exit 1    # run from this directory
 set -x
 
-# run from this directory only
-cd ${0%/*} || exit 1
 
-if [ "`uname -s`" == Darwin ]; then
+# build libccmio and create lnInclude directory
-    WM_SHARED_SUFFIX=dylib
+( cd $WM_THIRD_PARTY_DIR && ./AllwmakeLibccmio )
-else
-    WM_SHARED_SUFFIX=so
-fi 
 
-# build libccmio if required
+# if the library built properly, the headers should exist too
-if [ ! -e $FOAM_LIBBIN/libccmio.$WM_SHARED_SUFFIX ]
+if [ -e $FOAM_LIBBIN/libccmio.so ]
 then
-(
+    wmake ccm26ToFoam
-   cd $WM_THIRD_PARTY_DIR && ./AllwmakeLibccmio
-)
 fi
 
-# if the library built okay, the headers must exist too
+# ----------------------------------------------------------------- end-of-file
-if [ -e $FOAM_LIBBIN/libccmio.$WM_SHARED_SUFFIX ]
-then
-   wmake ccm26ToFoam
-fi
-
-# end

applications/utilities/mesh/conversion/Optional/ccm26ToFoam/ccm26ToFoam.C

@@ -244,35 +244,35 @@ void ReadProblem
      == kCCMIONoErr
     )
     {
-        char *name;
+	char *name;
-        int size;
+	int size;
         int cellType;
 
-        // ... if it has a material type.  (Note that we do not pass in
+	// ... if it has a material type.  (Note that we do not pass in
-        // an array to get the name because we do not know how long the
+	// an array to get the name because we do not know how long the
-        // string is yet.  Many parameters to CCMIO functions that
+	// string is yet.  Many parameters to CCMIO functions that
         // return
-        // data can be NULL if that data is not needed.)
+	// data can be NULL if that data is not needed.)
-        if
+	if
         (
             CCMIOReadOptstr(NULL, next, "MaterialType", &size, NULL)
          == kCCMIONoErr
         )
-        {
+	{
-            name = new char[size + 1];
+	    name = new char[size + 1];
-            CCMIOReadOptstr(&err, next, "MaterialType", &size, name);
+	    CCMIOReadOptstr(&err, next, "MaterialType", &size, name);
-            CCMIOGetEntityIndex(&err, next, &cellType);
+	    CCMIOGetEntityIndex(&err, next, &cellType);
 
             foamCellTypeNames.insert(cellType, name);
             Pout<< "Celltype:" << cellType << " name:" << name << endl;
 
-            delete [] name;
+	    delete [] name;
-        }
+	}
     }
 
     // ... walk through each region description and print it...
 
-
+    
     CCMIOID boundary;
     label regionI = 0;
     int k = 0;
@@ -302,7 +302,7 @@ void ReadProblem
             prostarI = regionI;
 
             Pout<< "For region:" << regionI
-                << " did not find ProstarRegionNumber entry. Assuming "
+                << "did not find ProstarRegionNumber entry. Assuming "
                 << prostarI << endl;
         }
 
@@ -319,13 +319,13 @@ void ReadProblem
                 CCMIOReadOptstr(NULL, boundary, "BoundaryType", &size, NULL)
              == kCCMIONoErr
             )
-            {
+	    {
-            char* s = new char[size + 1];
+	        char* s = new char[size + 1];
-            CCMIOReadOptstr(NULL, boundary, "BoundaryType", &size, s);
+	        CCMIOReadOptstr(NULL, boundary, "BoundaryType", &size, s);
                 s[size] = '\0';
                 foamPatchTypes[foamPatchI] = string::validate<word>(string(s));
-                delete [] s;
+	        delete [] s;
-            }
+	    }
 
 
             //foamPatchMap.append(prostarI);
@@ -341,31 +341,31 @@ void ReadProblem
                 CCMIOReadOptstr(NULL, boundary, "BoundaryName", &size, NULL)
              == kCCMIONoErr
             )
-            {
+	    {
-                char* name = new char[size + 1];
+	        char* name = new char[size + 1];
-                CCMIOReadOptstr(NULL, boundary, "BoundaryName", &size, name);
+	        CCMIOReadOptstr(NULL, boundary, "BoundaryName", &size, name);
                 name[size] = '\0';
                 foamPatchNames[foamPatchI] =
                     string::validate<word>(string(name));
 
-                delete [] name;
+	        delete [] name;
-            }
+	    }
             else if
             (
                 CCMIOReadOptstr(NULL, boundary, "Label", &size, NULL)
              == kCCMIONoErr
             )
-            {
+	    {
-                char* name = new char[size + 1];
+	        char* name = new char[size + 1];
-                CCMIOReadOptstr(NULL, boundary, "Label", &size, name);
+	        CCMIOReadOptstr(NULL, boundary, "Label", &size, name);
                 name[size] = '\0';
                 foamPatchNames[foamPatchI] =
                     string::validate<word>(string(name));
-                delete [] name;
+	        delete [] name;
-            }
+	    }
             else
             {
-                foamPatchNames[foamPatchI] =
+                foamPatchNames[foamPatchI] = 
                     foamPatchTypes[foamPatchI]
                   + Foam::name(foamPatchI);
                 Pout<< "Made up name:" << foamPatchNames[foamPatchI]
@@ -442,8 +442,8 @@ void ReadCells
      == kCCMIONoErr
     )
     {
-        CCMIOSize size;
+	CCMIOSize size;
-        CCMIOEntitySize(&err, id, &size, NULL);
+	CCMIOEntitySize(&err, id, &size, NULL);
 
         Pout<< "Read kCCMIOBoundaryFaces entry with " << size
             << " faces." << endl;
@@ -507,19 +507,19 @@ void ReadCells
     )
     {
         CCMIOSize nFaces;
-        CCMIOEntitySize(&err, id, &nFaces, NULL);
+	CCMIOEntitySize(&err, id, &nFaces, NULL);
 
-        mapData.resize(nFaces);
+	mapData.resize(nFaces);
-        faceCells.resize(nFaces);
+	faceCells.resize(nFaces);
-        CCMIOReadFaces(&err, id, kCCMIOBoundaryFaces, NULL, &size, NULL,
+	CCMIOReadFaces(&err, id, kCCMIOBoundaryFaces, NULL, &size, NULL,
-            kCCMIOStart, kCCMIOEnd);
+		       kCCMIOStart, kCCMIOEnd);
-        faces.resize(size);
+	faces.resize(size);
-        CCMIOReadFaces(&err, id, kCCMIOBoundaryFaces, &mapID, NULL, &faces[0],
+	CCMIOReadFaces(&err, id, kCCMIOBoundaryFaces, &mapID, NULL, &faces[0],
-            kCCMIOStart, kCCMIOEnd);
+		       kCCMIOStart, kCCMIOEnd);
-        CCMIOReadFaceCells(&err, id, kCCMIOBoundaryFaces, &faceCells[0],
+	CCMIOReadFaceCells(&err, id, kCCMIOBoundaryFaces, &faceCells[0],
-            kCCMIOStart, kCCMIOEnd);
+			   kCCMIOStart, kCCMIOEnd);
-        CCMIOReadMap(&err, mapID, &mapData[0], kCCMIOStart, kCCMIOEnd);
+	CCMIOReadMap(&err, mapID, &mapData[0], kCCMIOStart, kCCMIOEnd);
-        CheckError(err, "Error reading boundary faces");
+	CheckError(err, "Error reading boundary faces");
 
         // Read prostar id
         int prostarI;
@@ -617,7 +617,7 @@ int main(int argc, char *argv[])
     {
         fileName ccmFile(args.additionalArgs()[0]);
 
-        if (!exists(ccmFile))
+        if (!isFile(ccmFile))
         {
             FatalErrorIn(args.executable())
                 << "Cannot read file " << ccmFile
@@ -675,9 +675,9 @@ int main(int argc, char *argv[])
 
         if (err != kCCMIONoErr)
         {
-            // Maybe no solution;  try again
+	    // Maybe no solution;  try again
-            err = kCCMIONoErr;
+	    err = kCCMIONoErr;
-            CCMIOReadProcessor
+	    CCMIOReadProcessor
             (
                 &err,
                 processor,
@@ -686,13 +686,12 @@ int main(int argc, char *argv[])
                 NULL,
                 NULL
             );
-
+	    if (err != kCCMIONoErr)
-            if (err != kCCMIONoErr)
+	    {
-            {
+	        FatalErrorIn(args.executable())
-                FatalErrorIn(args.executable())
                     << "Could not read the file."
-                        << exit(FatalError);
+                    << exit(FatalError);
-            }
+	    }
         }
 
         ReadVertices(err, vertices, foamPointMap, foamPoints);
@@ -912,10 +911,10 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        foamPoints,
+        xferMove<pointField>(foamPoints),
-        foamFaces,
+        xferMove<faceList>(foamFaces),
-        foamOwner,
+        xferCopy<labelList>(foamOwner),
-        foamNeighbour
+        xferMove<labelList>(foamNeighbour)
     );
 
     // Create patches. Use patch types to determine what Foam types to generate.

applications/utilities/mesh/conversion/ansysToFoam/ansysToFoam.L

@@ -1,4 +1,4 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
@@ -246,10 +246,7 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
 #   include "createTime.H"
 

applications/utilities/mesh/conversion/cfx4ToFoam/cfx4ToFoam.C

@@ -60,10 +60,7 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
 #   include "createTime.H"
 
@@ -584,7 +581,7 @@ int main(int argc, char *argv[])
 
     forAll (rawPatches, patchI)
     {
-        if (rawPatches[patchI].size() > 0 && cfxPatchTypes[patchI] != "BLKBDY")
+        if (rawPatches[patchI].size() && cfxPatchTypes[patchI] != "BLKBDY")
         {
             // Check if this name has been already created
             label existingPatch = -1;

applications/utilities/mesh/conversion/fluent3DMeshToFoam/fluent3DMeshToFoam.L

@@ -1,8 +1,8 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
-    \\  /    A nd           | Copyright (C) 1991-2008 OpenCFD Ltd.
+    \\  /    A nd           | Copyright held by original author
      \\/     M anipulation  |
 -------------------------------------------------------------------------------
 License
@@ -48,6 +48,7 @@ Description
 #include "Swap.H"
 #include "IFstream.H"
 #include "wordIOList.H"
+#include "readHexLabel.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -93,6 +94,9 @@ DynamicList<label> cellGroupStartIndex;
 DynamicList<label> cellGroupEndIndex;
 DynamicList<label> cellGroupType;
 
+// Special parsing of (incorrect) Cubit files
+bool cubitFile = false;
+
 
 void uniquify(word& name, HashSet<word>& patchNames)
 {
@@ -623,11 +627,20 @@ endOfSection               {space}")"{space}
         BEGIN(readZoneGroupData);
     }
 
-<readZoneGroupData>{space}{label}{space}{word}{space}{word}{space}{label}? {
+<readZoneGroupData>{space}{hexLabel}{space}{word}{space}{word}{space}{label}? {
         IStringStream zoneDataStream(YYText());
 
         // cell zone-ID not in hexadecimal!!! Inconsistency
-        label zoneID(readLabel(zoneDataStream));
+        label zoneID = -1;
+
+        if (cubitFile)
+        {
+            zoneID = readHexLabel(zoneDataStream);
+        }
+        else
+        {
+            zoneID = readLabel(zoneDataStream);
+        }
 
         groupType.insert(zoneID, word(zoneDataStream));
         groupName.insert(zoneID, word(zoneDataStream));
@@ -753,6 +766,7 @@ int main(int argc, char *argv[])
     argList::validOptions.insert("scale", "scale factor");
     argList::validOptions.insert("ignoreCellGroups", "cell group names");
     argList::validOptions.insert("ignoreFaceGroups", "face group names");
+    argList::validOptions.insert("cubit", "");
 
     argList args(argc, argv);
 
@@ -761,21 +775,28 @@ int main(int argc, char *argv[])
         FatalError.exit();
     }
 
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
     HashSet<word> ignoreCellGroups;
-    if (args.options().found("ignoreCellGroups"))
+    if (args.optionFound("ignoreCellGroups"))
     {
-        IStringStream(args.options()["ignoreCellGroups"])() >> ignoreCellGroups;
+        args.optionLookup("ignoreCellGroups")() >> ignoreCellGroups;
     }
 
     HashSet<word> ignoreFaceGroups;
-    if (args.options().found("ignoreFaceGroups"))
+    if (args.optionFound("ignoreFaceGroups"))
     {
-        IStringStream(args.options()["ignoreFaceGroups"])() >> ignoreFaceGroups;
+        args.optionLookup("ignoreFaceGroups")() >> ignoreFaceGroups;
+    }
+
+    cubitFile = args.options().found("cubit");
+
+    if (cubitFile)
+    {
+        Info<< nl
+            << "Assuming Cubit generated file"
+            << " (incorrect face orientation; hexadecimal zoneIDs)."
+            << nl << endl;
     }
 
 #   include "createTime.H"
@@ -820,6 +841,8 @@ int main(int argc, char *argv[])
 
     // Pre-filtering: flip "owner" boundary or wrong oriented internal
     // faces and move to neighbour
+
+    boolList fm(faces.size(), false);
     forAll (faces, facei)
     {
         if
@@ -828,7 +851,11 @@ int main(int argc, char *argv[])
          || (neighbour[facei] != -1 && owner[facei] > neighbour[facei])
         )
         {
-            faces[facei] = faces[facei].reverseFace();
+            fm[facei] = true;
+            if (!cubitFile)
+            {
+                faces[facei] = faces[facei].reverseFace();
+            }
             Swap(owner[facei], neighbour[facei]);
         }
     }
@@ -884,10 +911,10 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        pointField(0),
+        xferCopy(pointField()),
-        faceList(0),
+        xferCopy(faceList()),
-        labelList(0),
+        xferCopy(labelList()),
-        labelList(0)
+        xferCopy(labelList())
     );
 
 

applications/utilities/mesh/conversion/fluentMeshToFoam/create3DCellShape.C

@@ -51,7 +51,7 @@ cellShape create3DCellShape
     static List<const cellModel*> fluentCellModelLookup
     (
         7,
-        reinterpret_cast<const cellModel*>(NULL)
+        reinterpret_cast<const cellModel*>(0)
     );
 
     fluentCellModelLookup[2] = cellModeller::lookup("tet");

applications/utilities/mesh/conversion/fluentMeshToFoam/fluentMeshToFoam.L

@@ -1,4 +1,4 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
@@ -56,7 +56,8 @@ Description
 
 #include "readHexLabel.H"
 #include "cellShapeRecognition.H"
-#include "repatch.H"
+#include "repatchPolyTopoChanger.H"
+
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -383,7 +384,7 @@ endOfSection               {space}")"{space}
         scalar x = readScalar(vertexXyzStream);
         scalar y = readScalar(vertexXyzStream);
 
-        points[pointI] = convertToMeters*point(x, y, 0);
+        points[pointI] = point(x, y, 0);
         pointI++;
     }
 
@@ -875,13 +876,10 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
-    bool writeSets = args.options().found("writeSets");
+    bool writeSets = args.optionFound("writeSets");
-    bool writeZones = args.options().found("writeZones");
+    bool writeZones = args.optionFound("writeZones");
 
 #   include "createTime.H"
 
@@ -1181,7 +1179,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        points,
+        xferMove(points),
         cellShapes,
         patches,
         patchNames,
@@ -1580,7 +1578,7 @@ int main(int argc, char *argv[])
 
     // Use facePatchIDs map to reorder boundary faces into compact regions
 
-    repatch repatcher(pShapeMesh);
+    repatchPolyTopoChanger repatcher(pShapeMesh);
 
     // Add new list of patches
     repatcher.changePatches(newPatches);
@@ -1592,7 +1590,7 @@ int main(int argc, char *argv[])
 
         repatcher.changePatchID(faceI, facePatchID[idI]);
     }
-    repatcher.execute();
+    repatcher.repatch();
 
     preservePatchTypes
     (
@@ -1642,28 +1640,28 @@ int main(int argc, char *argv[])
             boundaryZones[pI].append(bPatches[pI].name());
         }
 
-        label cnt=0;
+	    label cnt = 0;
-        SLList<label>::iterator cg = cellGroupZoneID.begin();
+	    SLList<label>::iterator cg = cellGroupZoneID.begin();
-        SLList<label>::iterator start = cellGroupStartIndex.begin();
+	    SLList<label>::iterator start = cellGroupStartIndex.begin();
-        SLList<label>::iterator end = cellGroupEndIndex.begin();
+	    SLList<label>::iterator end = cellGroupEndIndex.begin();
 
-        for (; cg != cellGroupZoneID.end(); ++cg, ++start, ++end)
+	    for (; cg != cellGroupZoneID.end(); ++cg, ++start, ++end)
-        {
+	    {
-            const word& name = patchNameIDs[cg()];
+	        const word& name = patchNameIDs[cg()];
-            const word& type = patchTypeIDs[cg()];
+	        const word& type = patchTypeIDs[cg()];
 
-            Info<< "Writing cell zone: " << name
+	        Info<< "Writing cell zone: " << name
                 << " of type " << type << " starting at " << start() - 1
                 << " ending at " << end() - 1 << " to cellSet." << endl;
 
-            labelList cls(end() - start() + 1);
+	        labelList cls(end() - start() + 1);
 
             // Mark zone cells, used for finding faces
             boolList zoneCell(pShapeMesh.nCells(), false);
 
-            // shift cell indizes by 1
+	        // Shift cell indices by 1
-            label nr=0;
+	        label nr = 0;
-            for (label celli = (start() - 1); celli < end(); celli++)
+	        for (label celli = (start() - 1); celli < end(); celli++)
             {
                 cls[nr] = celli;
                 zoneCell[celli] = true;

applications/utilities/mesh/conversion/foamMeshToFluent/fluentFvMesh.C

@@ -174,17 +174,11 @@ void Foam::fluentFvMesh::writeFluentMesh() const
         nWrittenFaces += patchFaces.size();
 
         // Write patch type
-        if
+        if (isA<wallFvPatch>(boundary()[patchI]))
-        (
-            typeid(boundary()[patchI]) == typeid(wallFvPatch)
-        )
         {
             fluentMeshFile << 3;
         }
-        else if
+        else if (isA<symmetryFvPatch>(boundary()[patchI]))
-        (
-            typeid(boundary()[patchI]) == typeid(symmetryFvPatch)
-        )
         {
             fluentMeshFile << 7;
         }
@@ -282,17 +276,11 @@ void Foam::fluentFvMesh::writeFluentMesh() const
             << "(39 (" << patchI + 10 << " ";
 
         // Write patch type
-        if
+        if (isA<wallFvPatch>(boundary()[patchI]))
-        (
-            typeid(boundary()[patchI]) == typeid(wallFvPatch)
-        )
         {
             fluentMeshFile << "wall ";
         }
-        else if
+        else if (isA<symmetryFvPatch>(boundary()[patchI]))
-        (
-            typeid(boundary()[patchI]) == typeid(symmetryFvPatch)
-        )
         {
             fluentMeshFile << "symmetry ";
         }

applications/utilities/mesh/conversion/foamToStarMesh/foamToStarMesh.C

@@ -61,6 +61,7 @@ See Also
 \*---------------------------------------------------------------------------*/
 
 #include "argList.H"
+#include "timeSelector.H"
 #include "Time.H"
 #include "polyMesh.H"
 #include "STARCDMeshWriter.H"
@@ -73,23 +74,20 @@ using namespace Foam;
 int main(int argc, char *argv[])
 {
     argList::noParallel();
+    timeSelector::addOptions();
+
     argList::validOptions.insert("scale", "scale");
     argList::validOptions.insert("noBnd", "");
     argList::validOptions.insert("tri", "");
     argList::validOptions.insert("surface", "");
 
-#   include "addTimeOptions.H"
 #   include "setRootCase.H"
 #   include "createTime.H"
-    // Get times list
-    instantList Times = runTime.times();
 
-    // set startTime and endTime depending on -time and -latestTime options
+    instantList timeDirs = timeSelector::select0(runTime, args);
-#   include "checkTimeOptions.H"
-    runTime.setTime(Times[startTime], startTime);
 
     bool surfaceOnly = false;
-    if (args.options().found("surface") or args.options().found("tri"))
+    if (args.optionFound("surface") || args.optionFound("tri"))
     {
         surfaceOnly = true;
     }
@@ -100,16 +98,15 @@ int main(int argc, char *argv[])
         exportName = meshWriter::defaultSurfaceName;
     }
 
-    if (args.options().found("case"))
+    if (args.optionFound("case"))
     {
         exportName += '-' + args.globalCaseName();
     }
 
     // default: rescale from [m] to [mm]
     scalar scaleFactor = 1000;
-    if (args.options().found("scale"))
+    if (args.optionReadIfPresent("scale", scaleFactor))
     {
-        scaleFactor = readScalar(IStringStream(args.options()["scale"])());
         if (scaleFactor <= 0)
         {
             scaleFactor = 1;
@@ -118,21 +115,20 @@ int main(int argc, char *argv[])
 
 #   include "createPolyMesh.H"
 
-    // bool firstCheck = true;
 
-    for (label timeI = startTime; timeI < endTime; ++timeI)
+    forAll(timeDirs, timeI)
     {
-        runTime.setTime(Times[timeI], timeI);
+        runTime.setTime(timeDirs[timeI], timeI);
 
 #       include "getTimeIndex.H"
 
         polyMesh::readUpdateState state = mesh.readUpdate();
 
-        if (timeI == startTime || state != polyMesh::UNCHANGED)
+        if (!timeI || state != polyMesh::UNCHANGED)
         {
             meshWriters::STARCD writer(mesh, scaleFactor);
 
-            if (args.options().found("noBnd"))
+            if (args.optionFound("noBnd"))
             {
                 writer.noBoundary();
             }
@@ -145,7 +141,7 @@ int main(int argc, char *argv[])
 
             if (surfaceOnly)
             {
-                if (args.options().found("tri"))
+                if (args.optionFound("tri"))
                 {
                     writer.writeSurface(meshName, true);
                 }

applications/utilities/mesh/conversion/gambitToFoam/gambitToFoam.L

@@ -1,4 +1,4 @@
-/*---------------------------------------------------------------------------*\
+/*--------------------------------*- C++ -*----------------------------------*\
   =========                 |
   \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
    \\    /   O peration     |
@@ -646,10 +646,7 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
 #   include "createTime.H"
 
@@ -851,7 +848,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        points,
+        xferMove(points),
         cells,
         boundary,
         patchNames,

applications/utilities/mesh/conversion/gmshToFoam/gmsh/mesh-1.geo

@@ -0,0 +1,79 @@
+// Parametres geometriques
+r1 = 200*Cos(Pi/4)/1000;
+r2 = 200*Cos(Pi/4)/1000;
+
+h1 = 250/1000;
+h2 = 360/1000;
+h3 = 900/1000;
+h4 = 1900/1000;
+
+// Parametres de maillage
+// selon le rayon
+rCells = 10/2; 	rRatio = 0.85;
+// selon S1
+S1Cells = 30/2; 	S1ratio = 1;
+// selon S2
+S2Cells = 35/2;	S2ratio = 0.95;
+// selon S3
+S3Cells = 20/2;	S3ratio = 1;
+
+Point(1) = {r1, r1, h4};
+Point(2) = {r1, r1, h3};
+Point(3) = {r2, r2, h2};
+Point(4) = {r2, r2, h1};
+Point(5) = {0, 0, h1};
+Point(6) = {0, 0, h2};
+Point(7) = {0, 0, h3};
+Point(8) = {0, 0, h4};
+
+Line(1) = {8, 1};
+Line(2) = {1, 2};
+Line(3) = {7, 2};
+Line(4) = {8, 7};
+Line(5) = {2, 3};
+Line(6) = {6, 3};
+Line(7) = {7, 6};
+Line(8) = {3, 4};
+Line(9) = {5, 4};
+Line(10) = {6, 5};
+
+Line Loop(11) = {1, 2, -3, -4};
+Ruled Surface(12) = {11};
+Line Loop(13) = {5, -6, -7, 3};
+Ruled Surface(14) = {13};
+Line Loop(15) = {8, -9, -10, 6};
+Ruled Surface(16) = {15};
+Transfinite Line {1, 3, 6, 9} = rCells Using Progression rRatio;
+Transfinite Line {4, 2} = S1Cells Using Progression S1ratio;
+Transfinite Line {7, 5} = S2Cells Using Progression S2ratio;
+Transfinite Line {10, 8} = S3Cells Using Progression S3ratio;
+Transfinite Surface {12} = {8, 1, 2, 7};
+Transfinite Surface {14} = {7, 2, 3, 6};
+Transfinite Surface {16} = {6, 3, 4, 5};
+Recombine Surface {12, 14, 16};
+Extrude {{0, 0, 1}, {0, 0, 0}, Pi/2} {
+  Surface{12, 14, 16};
+  Layers{25};
+  Recombine;
+}
+Extrude {{0, 0, 1}, {0, 0, 0}, Pi/2} {
+  Surface{33, 50, 67};
+  Layers{25};
+  Recombine;
+}
+Extrude {{0, 0, 1}, {0, 0, 0}, Pi/2} {
+  Surface{84, 101, 118};
+  Layers{25};
+  Recombine;
+}
+Extrude {{0, 0, 1}, {0, 0, 0}, Pi/2} {
+  Surface{135, 152, 169};
+  Layers{25};
+  Recombine;
+}
+Physical Surface("entree") = {126, 75, 24, 177};
+Physical Surface("S1") = {28, 181, 130, 79};
+Physical Surface("S2") = {93, 42, 193, 144};
+Physical Surface("S3") = {110, 59, 205, 161};
+Physical Surface("fond") = {113, 62, 208, 164};
+Physical Volume("fluide") = {4, 7, 10, 1, 5, 8, 11, 2, 9, 12, 3, 6};

applications/utilities/mesh/conversion/gmshToFoam/gmshToFoam.C

@@ -47,7 +47,7 @@ Description
 #include "polyMesh.H"
 #include "IFstream.H"
 #include "cellModeller.H"
-#include "repatch.H"
+#include "repatchPolyTopoChanger.H"
 #include "cellSet.H"
 #include "faceSet.H"
 
@@ -166,7 +166,7 @@ label findInternalFace(const primitiveMesh& mesh, const labelList& meshF)
         if (nMatched == meshF.size())
         {
             return faceI;
-        }        
+        }
     }
     return -1;
 }
@@ -312,11 +312,36 @@ void readPhysNames(IFstream& inFile, Map<word>& physicalNames)
         string line;
         inFile.getLine(line);
         IStringStream lineStr(line);
+        label nSpaces = lineStr.str().count(' ');
 
-        lineStr >> regionI >> regionName;
+        if(nSpaces == 1)
+        {
+            lineStr >> regionI >> regionName;
 
-        Info<< "    " << regionI << '\t' << string::validate<word>(regionName)
+            Info<< "    " << regionI << '\t'
-            << endl;
+                << string::validate<word>(regionName) << endl;
+        }
+        else if(nSpaces == 2)
+        {
+            // >= Gmsh2.4 physical types has tag in front.
+            label physType;
+            lineStr >> physType >> regionI >> regionName;
+            if (physType == 1)
+            {
+                Info<< "    " << "Line " << regionI << '\t'
+                    << string::validate<word>(regionName) << endl;
+            }
+            else if (physType == 2)
+            {
+                Info<< "    " << "Surface " << regionI << '\t'
+                    << string::validate<word>(regionName) << endl;
+            }
+            else if (physType == 3)
+            {
+                Info<< "    " << "Volume " << regionI << '\t'
+                    << string::validate<word>(regionName) << endl;
+            }
+        }
 
         physicalNames.insert(regionI, string::validate<word>(regionName));
     }
@@ -657,6 +682,16 @@ void readCells
     << "    tet  :" << nTet << endl
     << endl;
 
+    if (cells.size() == 0)
+    {
+        FatalErrorIn("readCells(..)")
+            << "No cells read from file " << inFile.name() << nl
+            << "Does your file specify any 3D elements (hex=" << MSHHEX
+            << ", prism=" << MSHPRISM << ", pyramid=" << MSHPYR
+            << ", tet=" << MSHTET << ")?" << nl
+            << "Perhaps you have not exported the 3D elements?"
+            << exit(FatalError);
+    }
 
     Info<< "CellZones:" << nl
         << "Zone\tSize" << endl;
@@ -667,7 +702,7 @@ void readCells
 
         const labelList& zCells = zoneCells[zoneI];
 
-        if (zCells.size() > 0)
+        if (zCells.size())
         {
             Info<< "    " << zoneI << '\t' << zCells.size() << endl;
         }
@@ -689,7 +724,7 @@ int main(int argc, char *argv[])
 
     fileName mshName(args.additionalArgs()[0]);
 
-    bool keepOrientation = args.options().found("keepOrientation");
+    bool keepOrientation = args.optionFound("keepOrientation");
 
     // Storage for points
     pointField points;
@@ -778,7 +813,7 @@ int main(int argc, char *argv[])
 
     forAll(zoneCells, zoneI)
     {
-        if (zoneCells[zoneI].size() > 0)
+        if (zoneCells[zoneI].size())
         {
             nValidCellZones++;
         }
@@ -835,7 +870,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        points,
+        xferMove(points),
         cells,
         boundaryFaces,
         boundaryPatchNames,
@@ -845,7 +880,7 @@ int main(int argc, char *argv[])
         boundaryPatchPhysicalTypes
     );
 
-    repatch repatcher(mesh);
+    repatchPolyTopoChanger repatcher(mesh);
 
     // Now use the patchFaces to patch up the outside faces of the mesh.
 
@@ -910,7 +945,7 @@ int main(int argc, char *argv[])
 
         const labelList& zFaces = zoneFaces[zoneI];
 
-        if (zFaces.size() > 0)
+        if (zFaces.size())
         {
             nValidFaceZones++;
 
@@ -923,7 +958,7 @@ int main(int argc, char *argv[])
     //Get polyMesh to write to constant
     runTime.setTime(instant(runTime.constant()), 0);
 
-    repatcher.execute();
+    repatcher.repatch();
 
     List<cellZone*> cz;
     List<faceZone*> fz;
@@ -940,7 +975,7 @@ int main(int argc, char *argv[])
 
         forAll(zoneCells, zoneI)
         {
-            if (zoneCells[zoneI].size() > 0)
+            if (zoneCells[zoneI].size())
             {
                 label physReg = zoneToPhys[zoneI];
 
@@ -979,7 +1014,7 @@ int main(int argc, char *argv[])
 
         forAll(zoneFaces, zoneI)
         {
-            if (zoneFaces[zoneI].size() > 0)
+            if (zoneFaces[zoneI].size())
             {
                 label physReg = zoneToPhys[zoneI];
 
@@ -1011,7 +1046,7 @@ int main(int argc, char *argv[])
         }
     }
 
-    if (cz.size() > 0 || fz.size() > 0)
+    if (cz.size() || fz.size())
     {
         mesh.addZones(List<pointZone*>(0), fz, cz);
     }

applications/utilities/mesh/conversion/ideasUnvToFoam/ideasUnvToFoam.C

@@ -208,12 +208,13 @@ void readPoints
         {
             hasWarned = true;
 
-            WarningIn
+            IOWarningIn
             (
                 "readPoints(IFstream&, label&, DynamicList<point>"
-                ", DynamicList<label>&)"
+                ", DynamicList<label>&)",
+                is
             )   << "Points not in order starting at point " << pointI
-                << " at line " << is.lineNumber()
+                //<< " at line " << is.lineNumber()
                 //<< abort(FatalError);
                 << endl;
         }
@@ -429,47 +430,53 @@ void readPatches
             >> dofSet >> tempSet >> contactSet >> nFaces;
 
         is.getLine(line);
-        patchNames.append(string::validate<word>(line));
+        word groupName = string::validate<word>(line);
 
-        Info<< "For facegroup " << group
+        Info<< "For group " << group
-            << " named " << patchNames[patchNames.size()-1]
+            << " named " << groupName
             << " trying to read " << nFaces << " patch face indices."
             << endl;
 
-        patchFaceIndices.append(labelList(0));
+        labelList groupIndices(nFaces);
-        labelList& faceIndices = patchFaceIndices[patchFaceIndices.size()-1];
+        label groupType = -1;
-        faceIndices.setSize(nFaces);
+        nFaces = 0;
-        label faceI = 0;
 
-        while (faceI < faceIndices.size())
+        while (nFaces < groupIndices.size())
         {
             is.getLine(line);
             IStringStream lineStr(line);
 
             // Read one (for last face) or two entries from line.
             label nRead = 2;
-            if (faceI == faceIndices.size()-1)
+            if (nFaces == groupIndices.size()-1)
             {
                 nRead = 1;
             }
 
             for (label i = 0; i < nRead; i++)
             {
-                label typeCode, tag, nodeLeaf, component;
+                label tag, nodeLeaf, component;
 
-                lineStr >> typeCode >> tag >> nodeLeaf >> component;
+                lineStr >> groupType >> tag >> nodeLeaf >> component;
 
-                if (typeCode != 8)
+                groupIndices[nFaces++] = tag;
-                {
-                    FatalErrorIn("readPatches")
-                        << "When reading patches expect Entity Type Code 8"
-                        << nl << "At line " << is.lineNumber()
-                        << exit(FatalError);
-                }
-
-                faceIndices[faceI++] = tag;
             }
         }
+
+
+        // Store
+        if (groupType == 8)
+        {
+            patchNames.append(groupName);
+            patchFaceIndices.append(groupIndices);
+        }
+        else
+        {
+            IOWarningIn("readPatches(..)", is)
+                << "When reading patches expect entity type code 8"
+                << nl << "    Skipping group code " << groupType
+                << endl;
+        }
     }
 
     patchNames.shrink();
@@ -572,6 +579,7 @@ int main(int argc, char *argv[])
 {
     argList::noParallel();
     argList::validArgs.append(".unv file");
+    argList::validOptions.insert("dump", "");
 
 #   include "setRootCase.H"
 #   include "createTime.H"
@@ -751,7 +759,7 @@ int main(int argc, char *argv[])
     List<faceList> patchFaceVerts;
 
 
-    if (dofVertIndices.size() > 0)
+    if (dofVertIndices.size())
     {
         // Use the vertex constraints to patch. Is of course bit dodgy since
         // face goes on patch if all its vertices are on a constraint.
@@ -806,7 +814,7 @@ int main(int argc, char *argv[])
 
         forAll(dynPatchFaces, patchI)
         {
-            patchFaceVerts[patchI].transfer(dynPatchFaces[patchI].shrink());
+            patchFaceVerts[patchI].transfer(dynPatchFaces[patchI]);
         }
     }
     else
@@ -845,13 +853,13 @@ int main(int argc, char *argv[])
 
     pointField polyPoints;
     polyPoints.transfer(points);
-    points.clear();
 
     // Length scaling factor
     polyPoints /= lengthScale;
 
 
     // For debugging: dump boundary faces as triSurface
+    if (args.optionFound("dump"))
     {
         DynamicList<labelledTri> triangles(boundaryFaces.size());
 
@@ -887,7 +895,6 @@ int main(int argc, char *argv[])
     }
 
 
-
     Info<< "Constructing mesh with non-default patches of size:" << nl;
     forAll(patchNames, patchI)
     {
@@ -907,14 +914,14 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        polyPoints,
+        xferMove(polyPoints),
         cellVerts,
-        patchFaceVerts,             //boundaryFaces,
+        patchFaceVerts,             // boundaryFaces,
-        patchNames,                 //boundaryPatchNames,
+        patchNames,                 // boundaryPatchNames,
-        wordList(patchNames.size(), polyPatch::typeName), //boundaryPatchTypes,
+        wordList(patchNames.size(), polyPatch::typeName), // boundaryPatchTypes,
-        "defaultFaces",             //defaultFacesName
+        "defaultFaces",             // defaultFacesName
-        polyPatch::typeName,        //defaultFacesType,
+        polyPatch::typeName,        // defaultFacesType,
-        wordList(0)                 //boundaryPatchPhysicalTypes
+        wordList(0)                 // boundaryPatchPhysicalTypes
     );
 
     mesh.write();

applications/utilities/mesh/conversion/ideasUnvToFoam/unv/mesh.unv

@@ -0,0 +1,394 @@
+    -1
+  2411
+         1         0         0         0
+   2.0000000000000000E+02   3.0000000000000000E+02   0.0000000000000000E+00
+         2         0         0         0
+   2.0000000000000000E+02   3.0000000000000000E+02   2.1000000000000000E+02
+         3         0         0         0
+   2.0000000000000000E+02   0.0000000000000000E+00   0.0000000000000000E+00
+         4         0         0         0
+   2.0000000000000000E+02   0.0000000000000000E+00   2.1000000000000000E+02
+         5         0         0         0
+   0.0000000000000000E+00   3.0000000000000000E+02   0.0000000000000000E+00
+         6         0         0         0
+   0.0000000000000000E+00   3.0000000000000000E+02   2.1000000000000000E+02
+         7         0         0         0
+   0.0000000000000000E+00   0.0000000000000000E+00   0.0000000000000000E+00
+         8         0         0         0
+   0.0000000000000000E+00   0.0000000000000000E+00   2.1000000000000000E+02
+         9         0         0         0
+   0.0000000000000000E+00   1.0020000000000000E+02   2.1000000000000000E+02
+        10         0         0         0
+   0.0000000000000000E+00   2.0009999999999999E+02   2.1000000000000000E+02
+        11         0         0         0
+   1.0000000000000000E+02   3.0000000000000000E+02   2.1000000000000000E+02
+        12         0         0         0
+   2.0000000000000000E+02   1.0020000000000000E+02   2.1000000000000000E+02
+        13         0         0         0
+   2.0000000000000000E+02   2.0009999999999999E+02   2.1000000000000000E+02
+        14         0         0         0
+   1.0000000000000000E+02   0.0000000000000000E+00   2.1000000000000000E+02
+        15         0         0         0
+   0.0000000000000000E+00   1.0020000000000000E+02   0.0000000000000000E+00
+        16         0         0         0
+   0.0000000000000000E+00   2.0009999999999999E+02   0.0000000000000000E+00
+        17         0         0         0
+   1.0000000000000000E+02   3.0000000000000000E+02   0.0000000000000000E+00
+        18         0         0         0
+   2.0000000000000000E+02   1.0020000000000000E+02   0.0000000000000000E+00
+        19         0         0         0
+   2.0000000000000000E+02   2.0009999999999999E+02   0.0000000000000000E+00
+        20         0         0         0
+   1.0000000000000000E+02   0.0000000000000000E+00   0.0000000000000000E+00
+        21         0         0         0
+   2.0000000000000000E+02   3.0000000000000000E+02   1.0500000000000000E+02
+        22         0         0         0
+   0.0000000000000000E+00   3.0000000000000000E+02   1.0500000000000000E+02
+        23         0         0         0
+   2.0000000000000000E+02   0.0000000000000000E+00   1.0500000000000000E+02
+        24         0         0         0
+   0.0000000000000000E+00   0.0000000000000000E+00   1.0500000000000000E+02
+        25         0         0         0
+   9.6161727574445891E+01   1.3290789499900029E+02   2.1000000000000000E+02
+        26         0         0         0
+   8.0082880863556014E+01   2.2412763570985578E+02   2.1000000000000000E+02
+        27         0         0         0
+   9.6161727574240444E+01   1.3290789499883087E+02   0.0000000000000000E+00
+        28         0         0         0
+   8.0082880863392205E+01   2.2412763570989483E+02   0.0000000000000000E+00
+        29         0         0         0
+   2.0000000000000000E+02   1.5011560268321134E+02   1.0500000000592973E+02
+        30         0         0         0
+   0.0000000000000000E+00   1.5011560299451648E+02   1.0499999963389952E+02
+        31         0         0         0
+   9.9094099553883055E+01   7.2457929267250009E+01   1.0499999994714025E+02
+    -1
+    -1
+  2412
+         1        11         2         1         7         2
+         0         0         0
+         9         8
+         2        11         2         1         7         2
+         0         0         0
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+         0         0         0
+         6        10
+         4        11         2         1         7         2
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+         0         0         0
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+         0         0         0
+         5        17
+        15        11         2         1         7         2
+         0         0         0
+        17         1
+        16        11         2         1         7         2
+         0         0         0
+        18         3
+        17        11         2         1         7         2
+         0         0         0
+        19        18
+        18        11         2         1         7         2
+         0         0         0
+         1        19
+        19        11         2         1         7         2
+         0         0         0
+        20         7
+        20        11         2         1         7         2
+         0         0         0
+         3        20
+        21        11         2         1         7         2
+         0         0         0
+        21         1
+        22        11         2         1         7         2
+         0         0         0
+         2        21
+        23        11         2         1         7         2
+         0         0         0
+         5        22
+        24        11         2         1         7         2
+         0         0         0
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+         0         0         0
+         3        23
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+         0         0         0
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+         0         0         0
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+        28        11         2         1         7         2
+         0         0         0
+         8        24
+        29        41         2         1         7         3
+         9         8        14
+        30        41         2         1         7         3
+        10         9        25
+        31        41         2         1         7         3
+         6        10        26
+        32        41         2         1         7         3
+        11         6        26
+        33        41         2         1         7         3
+        10        25        26
+        34        41         2         1         7         3
+         2        11        13
+        35        41         2         1         7         3
+         4        12        14
+        36        41         2         1         7         3
+        12        13        25
+        37        41         2         1         7         3
+        14        12        25
+        38        41         2         1         7         3
+         9        14        25
+        39        41         2         1         7         3
+        13        11        26
+        40        41         2         1         7         3
+        13        26        25
+        41        41         2         1         7         3
+         7        15        20
+        42        41         2         1         7         3
+        15        16        27
+        43        41         2         1         7         3
+        16         5        28
+        44        41         2         1         7         3
+        27        16        28
+        45        41         2         1         7         3
+         5        17        28
+        46        41         2         1         7         3
+        17         1        19
+        47        41         2         1         7         3
+        18         3        20
+        48        41         2         1         7         3
+        19        18        27
+        49        41         2         1         7         3
+        18        20        27
+        50        41         2         1         7         3
+        20        15        27
+        51        41         2         1         7         3
+        17        19        28
+        52        41         2         1         7         3
+        28        19        27
+        53        41         2         1         7         3
+        17         5        22
+        54        41         2         1         7         3
+         1        17        21
+        55        41         2         1         7         3
+         2        21        11
+        56        41         2         1         7         3
+         6        11        22
+        57        41         2         1         7         3
+        22        11        21
+        58        41         2         1         7         3
+        22        21        17
+        59        41         2         1         7         3
+         7        20        24
+        60        41         2         1         7         3
+        20         3        23
+        61        41         2         1         7         3
+        23         4        14
+        62        41         2         1         7         3
+        14         8        24
+        63        41         2         1         7         3
+        14        24        23
+        64        41         2         1         7         3
+        20        23        24
+        65        41         2         1         7         3
+        23         3        18
+        66        41         2         1         7         3
+         4        23        12
+        67        41         2         1         7         3
+        13        12        29
+        68        41         2         1         7         3
+         2        13        21
+        69        41         2         1         7         3
+        22        16        30
+        70        41         2         1         7         3
+        13        29        21
+        71        41         2         1         7         3
+         1        21        19
+        72        41         2         1         7         3
+        12        23        29
+        73        41         2         1         7         3
+        18        19        29
+        74        41         2         1         7         3
+        23        18        29
+        75        41         2         1         7         3
+        15        24        30
+        76        41         2         1         7         3
+        29        19        21
+        77        41         2         1         7         3
+         7        24        15
+        78        41         2         1         7         3
+        24         8         9
+        79        41         2         1         7         3
+         9        10        30
+        80        41         2         1         7         3
+        10         6        22
+        81        41         2         1         7         3
+        30        10        22
+        82        41         2         1         7         3
+        16        15        30
+        83        41         2         1         7         3
+        22         5        16
+        84        41         2         1         7         3
+        24         9        30
+        85       111         2         1         7         4
+        21        28        22        17
+        86       111         2         1         7         4
+        31        18        29        23
+        87       111         2         1         7         4
+        31        29        18        27
+        88       111         2         1         7         4
+        29        21        26        13
+        89       111         2         1         7         4
+        29        25        26        30
+        90       111         2         1         7         4
+        26        28        29        30
+        91       111         2         1         7         4
+        16        28         5        22
+        92       111         2         1         7         4
+        30        25        10         9
+        93       111         2         1         7         4
+        16        30        15        27
+        94       111         2         1         7         4
+        26        25        10        30
+        95       111         2         1         7         4
+        21        28        26        22
+        96       111         2         1         7         4
+        31        20        18        23
+        97       111         2         1         7         4
+        27        28        16        30
+        98       111         2         1         7         4
+        18        27        29        19
+        99       111         2         1         7         4
+        21        22        26        11
+       100       111         2         1         7         4
+        23         4        12        14
+       101       111         2         1         7         4
+        31        25        29        30
+       102       111         2         1         7         4
+        31        18        20        27
+       103       111         2         1         7         4
+        21        11        26        13
+       104       111         2         1         7         4
+        22        28         5        17
+       105       111         2         1         7         4
+         2        11        21        13
+       106       111         2         1         7         4
+        29        25        12        13
+       107       111         2         1         7         4
+        30        28        16        22
+       108       111         2         1         7         4
+        31        24        20        23
+       109       111         2         1         7         4
+        26        28        30        22
+       110       111         2         1         7         4
+        21        17        19        28
+       111       111         2         1         7         4
+        15        24        31        30
+       112       111         2         1         7         4
+        31         9        30        24
+       113       111         2         1         7         4
+        15        30        31        27
+       114       111         2         1         7         4
+         8        14        24         9
+       115       111         2         1         7         4
+        26        22        10         6
+       116       111         2         1         7         4
+        31        25        12        29
+       117       111         2         1         7         4
+        31        29        12        23
+       118       111         2         1         7         4
+        31        30         9        25
+       119       111         2         1         7         4
+        21         1        19        17
+       120       111         2         1         7         4
+        29        19        27        28
+       121       111         2         1         7         4
+        10        22        26        30
+       122       111         2         1         7         4
+        29        28        26        21
+       123       111         2         1         7         4
+         7        20        15        24
+       124       111         2         1         7         4
+        11        22        26         6
+       125       111         2         1         7         4
+        29        28        27        30
+       126       111         2         1         7         4
+        31        23        12        14
+       127       111         2         1         7         4
+        26        25        29        13
+       128       111         2         1         7         4
+        15        27        31        20
+       129       111         2         1         7         4
+        21        19        29        28
+       130       111         2         1         7         4
+        18         3        23        20
+       131       111         2         1         7         4
+        15        20        31        24
+       132       111         2         1         7         4
+        27        31        29        30
+       133       111         2         1         7         4
+        31        14         9        24
+       134       111         2         1         7         4
+        31         9        14        25
+       135       111         2         1         7         4
+        31        14        12        25
+       136       111         2         1         7         4
+        31        23        14        24
+    -1
+    -1
+  2467
+         0         0         0         0         0         0         0        10
+outlet
+         8        70         0         0         8        67         0         0
+         8        68         0         0         8        71         0         0
+         8        76         0         0         8        66         0         0
+         8        72         0         0         8        73         0         0
+         8        74         0         0         8        65         0         0
+         1         0         0         0         0         0         0        12
+inlet
+         8        36         0         0         8        30         0         0
+         8        31         0         0         8        37         0         0
+         8        34         0         0         8        38         0         0
+         8        33         0         0         8        35         0         0
+         8        32         0         0         8        29         0         0
+         8        39         0         0         8        40         0         0
+         2         0         0         0         0         0         0        12
+nodes
+         7         2         0         0         7         4         0         0
+         7         6         0         0         7         8         0         0
+         7         9         0         0         7        10         0         0
+         7        11         0         0         7        12         0         0
+         7        13         0         0         7        14         0         0
+         7        25         0         0         7        26         0         0
+    -1

applications/utilities/mesh/conversion/kivaToFoam/kivaToFoam.C

@@ -68,15 +68,15 @@ int main(int argc, char *argv[])
 #   include "createTime.H"
 
     fileName kivaFileName("otape17");
-    if (args.options().found("file"))
+    if (args.optionFound("file"))
     {
-        kivaFileName = args.options()["file"];
+        kivaFileName = args.option("file");
     }
 
     kivaVersions kivaVersion = kiva3v;
-    if (args.options().found("version"))
+    if (args.optionFound("version"))
     {
-        word kivaVersionName = args.options()["version"];
+        word kivaVersionName = args.option("version");
 
         if (kivaVersionName == "kiva3")
         {
@@ -99,10 +99,7 @@ int main(int argc, char *argv[])
     }
 
     scalar zHeadMin = -GREAT;
-    if (args.options().found("zHeadMin"))
+    args.optionReadIfPresent("zHeadMin", zHeadMin);
-    {
-        zHeadMin = atof(args.options()["zHeadMin"].c_str());
-    }
 
 #   include "readKivaGrid.H"
 

applications/utilities/mesh/conversion/kivaToFoam/readKivaGrid.H

@@ -576,7 +576,7 @@ polyMesh pShapeMesh
         runTime.constant(),
         runTime
     ),
-    points,
+    xferMove(points),
     cellShapes,
     boundary,
     patchNames,

applications/utilities/mesh/conversion/mshToFoam/mshToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Reads .msh format generated by the Adventure system.
+    Converts .msh file generated by the Adventure system.
 
     Note: the .msh format does not contain any boundary information. It is
     purely a description of the internal mesh.
@@ -62,14 +62,12 @@ int main(int argc, char *argv[])
 #   include "setRootCase.H"
 #   include "createTime.H"
 
-    bool readHex(args.options().found("hex"));
+    bool readHex = args.optionFound("hex");
 
     fileName mshFile(args.additionalArgs()[0]);
-
     IFstream mshStream(mshFile);
 
     label nCells;
-
     mshStream >> nCells;
 
     if (readHex)
@@ -140,7 +138,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        points,
+        xferMove(points),
         cells,
         faceListList(0),
         wordList(0),
@@ -153,7 +151,7 @@ int main(int argc, char *argv[])
     Info<< "Writing mesh ..." << endl;
 
     mesh.write();
-    
+
 
     Info<< "End\n" << endl;
 

applications/utilities/mesh/conversion/netgenNeutralToFoam/netgenNeutralToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    read Neutral file format as written by Netgen4.4.
+    Converts neutral file format as written by Netgen v4.4.
 
     Example:
 
@@ -89,13 +89,11 @@ using namespace Foam;
 int main(int argc, char *argv[])
 {
     argList::validArgs.append("Neutral file");
-    argList::validOptions.insert("overwrite", "");
 
 #   include "setRootCase.H"
 #   include "createTime.H"
 
     fileName neuFile(args.additionalArgs()[0]);
-    bool overwrite = args.options().found("overwrite");
 
 
     IFstream str(neuFile);
@@ -244,7 +242,7 @@ int main(int argc, char *argv[])
     }
 
 
-    if (vertsToBoundary.size() > 0)
+    if (vertsToBoundary.size())
     {
         // Didn't find cells connected to boundary faces.
         WarningIn(args.executable())
@@ -291,20 +289,13 @@ int main(int argc, char *argv[])
                 << patchNames[patchI] << "\t\t"
                 << allPatchFaces[patchI].size() << endl;
 
-            allPatchFaces[patchI].shrink();
             patchFaces[patchI].transfer(allPatchFaces[patchI]);
-            allPatchFaces[patchI].clear();
         }
 
         Info<< endl;
     }
 
 
-    if (!overwrite)
-    {
-        runTime++;
-    }
-
     polyMesh mesh
     (
         IOobject
@@ -313,7 +304,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        points,
+        xferMove(points),
         cells,
         patchFaces,
         patchNames,

applications/utilities/mesh/conversion/plot3dToFoam/plot3dToFoam.C

@@ -28,7 +28,8 @@ Description
     Work in progress! Handles ascii multiblock (and optionally singleBlock)
     format.
     By default expects blanking. Use -noBlank if none.
-    Use -2D <thickness> if 2D.
+    Use -2D @a thickness if 2D.
+
     Niklas Nordin has experienced a problem with lefthandedness of the blocks.
     The code should detect this automatically - see hexBlock::readPoints but
     if this goes wrong just set the blockHandedness_ variable to 'right'
@@ -70,18 +71,14 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
-    bool readBlank = !args.options().found("noBlank");
+    bool readBlank = !args.optionFound("noBlank");
-    bool singleBlock = args.options().found("singleBlock");
+    bool singleBlock = args.optionFound("singleBlock");
-    scalar twoDThicknes = -1;
+    scalar twoDThickness = -1;
-    if (args.options().found("2D"))
+    if (args.optionReadIfPresent("2D", twoDThickness))
     {
-        twoDThicknes = readScalar(IStringStream(args.options()["2D"])());
+        Info<< "Reading 2D case by extruding points by " << twoDThickness
-        Info<< "Reading 2D case by extruding points by " << twoDThicknes
             << " in z direction." << nl << endl;
     }
 
@@ -113,7 +110,7 @@ int main(int argc, char *argv[])
 
         forAll (blocks, blockI)
         {
-            if (twoDThicknes > 0)
+            if (twoDThickness > 0)
             {
                 // Fake second set of points (done in readPoints below)
                 plot3dFile >> nx >> ny;
@@ -138,7 +135,7 @@ int main(int argc, char *argv[])
     forAll (blocks, blockI)
     {
         Info<< "block " << blockI << ":" << nl;
-        blocks[blockI].readPoints(readBlank, twoDThicknes, plot3dFile);
+        blocks[blockI].readPoints(readBlank, twoDThickness, plot3dFile);
         sumPoints += blocks[blockI].nBlockPoints();
         nMeshCells += blocks[blockI].nBlockCells();
         Info<< nl;
@@ -231,7 +228,7 @@ int main(int argc, char *argv[])
             runTime.constant(),
             runTime
         ),
-        newPoints,
+        xferMove(newPoints),
         cellShapes,
         boundary,
         patchNames,

applications/utilities/mesh/conversion/polyDualMesh/Make/files

@@ -1,3 +1,4 @@
+meshDualiser.C
 polyDualMeshApp.C
 
 EXE = $(FOAM_APPBIN)/polyDualMesh

applications/utilities/mesh/conversion/polyDualMesh/Make/options

@@ -1,6 +1,9 @@
 EXE_INC = \
     -I$(LIB_SRC)/meshTools/lnInclude \
-    -I$(LIB_SRC)/conversion/lnInclude
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/dynamicMesh/lnInclude
 
 EXE_LIBS = \
-    -lmeshTools -lconversion
+    -lfiniteVolume \
+    -ldynamicMesh \
+    -lmeshTools

applications/utilities/mesh/conversion/polyDualMesh/meshDualiser.H

@@ -0,0 +1,262 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    meshDualiser
+
+Description
+    Creates dual of polyMesh. Every point becomes a cell (or multiple cells
+    for feature points), a walk around every edge creates faces between them.
+
+    Put all points you want in the final mesh into featurePoints; all edge(mid)s
+    you want in the final mesh into featureEdges; all face(centre)s in
+    faceFaces.
+
+    Usually to preserve boundaries:
+        - all boundary faces are featureFaces
+        - all edges and points inbetween different patches are
+          featureEdges/points.
+
+    In same way you can also preserve internal faces (e.g. faceZones)
+
+SourceFiles
+    meshDualiser.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef meshDualiser_H
+#define meshDualiser_H
+
+#include "DynamicList.H"
+#include "PackedBoolList.H"
+#include "boolList.H"
+#include "typeInfo.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+class polyMesh;
+class polyTopoChange;
+
+/*---------------------------------------------------------------------------*\
+                           Class meshDualiser Declaration
+\*---------------------------------------------------------------------------*/
+
+class meshDualiser
+{
+    // Private data
+
+        const polyMesh& mesh_;
+
+        //- From point on cell to dual cell. Either single entry or
+        //  one entry per pointCells
+        labelListList pointToDualCells_;
+
+        //- From point to dual point (or -1 if not feature point).
+        labelList pointToDualPoint_;
+
+        //- From cell to dual point. All cells become point
+        labelList cellToDualPoint_;
+
+        //- From face to dual point (or -1 if not feature face)
+        labelList faceToDualPoint_;
+
+        //- From edge to dual point (or -1 if not feature edge)
+        labelList edgeToDualPoint_;
+
+
+    // Private Member Functions
+
+        static void checkPolyTopoChange(const polyTopoChange&);
+
+        static void dumpPolyTopoChange(const polyTopoChange&, const fileName&);
+
+        //- Find dual cell given point and cell
+        label findDualCell(const label cellI, const label pointI) const;
+
+        //- Helper function to generate dualpoints on all boundary edges
+        //  emanating from (boundary & feature) point
+        void generateDualBoundaryEdges
+        (
+            const PackedBoolList&,
+            const label pointI,
+            polyTopoChange&
+        );
+
+        //- Check that owner and neighbour of face have same dual cell
+        bool sameDualCell
+        (
+            const label faceI,
+            const label pointI
+        ) const;
+
+        //- Add internal face
+        label addInternalFace
+        (
+            const label masterPointI,
+            const label masterEdgeI,
+            const label masterFaceI,
+
+            const bool edgeOrder,
+            const label dualCell0,
+            const label dualCell1,
+            const DynamicList<label>& verts,
+            polyTopoChange& meshMod
+        ) const;
+
+        //- Add boundary face
+        label addBoundaryFace
+        (
+            const label masterPointI,
+            const label masterEdgeI,
+            const label masterFaceI,
+
+            const label dualCellI,
+            const label patchI,
+            const DynamicList<label>& verts,
+            polyTopoChange& meshMod
+        ) const;
+
+        //- Create internal faces walking around edge
+        void createFacesAroundEdge
+        (
+            const bool splitFace,
+            const PackedBoolList&,
+            const label edgeI,
+            const label startFaceI,
+            polyTopoChange&,
+            boolList& doneEFaces
+        ) const;
+
+        //- Create single internal face from internal face
+        void createFaceFromInternalFace
+        (
+            const label faceI,
+            label& fp,
+            polyTopoChange&
+        ) const;
+
+        //- Creates boundary faces walking around point on patchI.
+        void createFacesAroundBoundaryPoint
+        (
+            const label patchI,
+            const label patchPointI,
+            const label startFaceI,
+            polyTopoChange&,
+            boolList& donePFaces            // pFaces visited
+        ) const;
+
+        //- Disallow default bitwise copy construct
+        meshDualiser(const meshDualiser&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const meshDualiser&);
+
+
+public:
+
+    //- Runtime type information
+    ClassName("meshDualiser");
+
+
+    // Constructors
+
+        //- Construct from mesh
+        meshDualiser(const polyMesh&);
+
+
+    // Member Functions
+
+        // Access
+
+            //- From point on cell to dual cell. Either single entry or
+            //  one entry per pointCells.
+            const labelListList& pointToDualCells() const
+            {
+                return pointToDualCells_;
+            }
+
+            //- From point to dual point (or -1 if not feature point).
+            const labelList& pointToDualPoint() const
+            {
+                return pointToDualPoint_;
+            }
+
+            //- From cell to dual point (at cell centre). All cells become
+            //  points.
+            const labelList& cellToDualPoint() const
+            {
+                return cellToDualPoint_;
+            }
+
+            //- From face to dual point (at face centre; or -1 if not
+            //  feature face).
+            const labelList& faceToDualPoint() const
+            {
+                return faceToDualPoint_;
+            }
+
+            //- From edge to dual point (at edge mid; or -1 if not feature
+            //  edge).
+            const labelList& edgeToDualPoint() const
+            {
+                return edgeToDualPoint_;
+            }
+
+
+        // Edit
+
+
+            //- Insert all changes into meshMod to convert the polyMesh into
+            //  its dual.
+            //  featureFaces  : faces where we want a point at the face centre
+            //  featureEdges  : edges           ,,                 edge mid
+            //  featurePoints : points          ,,    point. Two variants:
+            //      singleCellFeaturePoints : point becomes one dualcell.
+            //          Use this for e.g. convex boundary points.
+            //      multiCellFeaturePoints : one dualcell per original cell
+            //          around point. Use this for e.g. concave boundary points
+            //          since it prevents big concave boundary cells.
+            void setRefinement
+            (
+                const bool splitFace,
+                const labelList& featureFaces,
+                const labelList& featureEdges,
+                const labelList& singleCellFeaturePoints,
+                const labelList& multiCellFeaturePoints,
+                polyTopoChange& meshMod
+            );
+};
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

applications/utilities/mesh/conversion/polyDualMesh/polyDualMeshApp.C

@@ -22,35 +22,370 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Application
-    polyDualMesh
-
 Description
-    Calculate the dual of a polyMesh. Adheres to all the feature&patch edges
+    Calculate the dual of a polyMesh. Adheres to all the feature and patch
+    edges.
+
+Usage
+
+    - polyDualMesh featureAngle
+
+    Detects any boundary edge > angle and creates multiple boundary faces
+    for it. Normal behaviour is to have each point become a cell
+    (1.5 behaviour)
+
+    @param -concaveMultiCells
+    Creates multiple cells for each point on a concave edge. Might limit
+    the amount of distortion on some meshes.
+
+    @param -splitAllFaces
+    Normally only constructs a single face between two cells. This single face
+    might be too distorted. splitAllFaces will create a single face for every
+    original cell the face passes through. The mesh will thus have
+    multiple faces inbetween two cells! (so is not strictly upper-triangular
+    anymore - checkMesh will complain)
+
+    @param -doNotPreserveFaceZones:
+    By default all faceZones are preserved by marking all faces, edges and
+    points on them as features. The -doNotPreserveFaceZones disables this
+    behaviour.
+
+    Note: is just a driver for meshDualiser. Substitute your own
+    simpleMarkFeatures to have different behaviour.
 
 \*---------------------------------------------------------------------------*/
 
 #include "argList.H"
 #include "Time.H"
-#include "polyDualMesh.H"
+#include "timeSelector.H"
+#include "fvMesh.H"
 #include "mathematicalConstants.H"
+#include "polyTopoChange.H"
+#include "mapPolyMesh.H"
+#include "PackedBoolList.H"
+#include "meshTools.H"
+#include "OFstream.H"
+#include "meshDualiser.H"
+#include "ReadFields.H"
+#include "volFields.H"
+#include "surfaceFields.H"
 
 using namespace Foam;
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+// Naive feature detection. All boundary edges with angle > featureAngle become
+// feature edges. All points on feature edges become feature points. All
+// boundary faces become feature faces.
+void simpleMarkFeatures
+(
+    const polyMesh& mesh,
+    const PackedBoolList& isBoundaryEdge,
+    const scalar featureAngle,
+    const bool concaveMultiCells,
+    const bool doNotPreserveFaceZones,
+
+    labelList& featureFaces,
+    labelList& featureEdges,
+    labelList& singleCellFeaturePoints,
+    labelList& multiCellFeaturePoints
+)
+{
+    scalar minCos = Foam::cos(featureAngle * mathematicalConstant::pi/180.0);
+
+    const polyBoundaryMesh& patches = mesh.boundaryMesh();
+
+    // Working sets
+    labelHashSet featureEdgeSet;
+    labelHashSet singleCellFeaturePointSet;
+    labelHashSet multiCellFeaturePointSet;
+
+
+    // 1. Mark all edges between patches
+    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+    forAll(patches, patchI)
+    {
+        const polyPatch& pp = patches[patchI];
+        const labelList& meshEdges = pp.meshEdges();
+
+        // All patch corner edges. These need to be feature points & edges!
+        for (label edgeI = pp.nInternalEdges(); edgeI < pp.nEdges(); edgeI++)
+        {
+            label meshEdgeI = meshEdges[edgeI];
+            featureEdgeSet.insert(meshEdgeI);
+            singleCellFeaturePointSet.insert(mesh.edges()[meshEdgeI][0]);
+            singleCellFeaturePointSet.insert(mesh.edges()[meshEdgeI][1]);
+        }
+    }
+
+
+
+    // 2. Mark all geometric feature edges
+    // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+    // Make distinction between convex features where the boundary point becomes
+    // a single cell and concave features where the boundary point becomes
+    // multiple 'half' cells.
+
+    // Addressing for all outside faces
+    primitivePatch allBoundary
+    (
+        SubList<face>
+        (
+            mesh.faces(),
+            mesh.nFaces()-mesh.nInternalFaces(),
+            mesh.nInternalFaces()
+        ),
+        mesh.points()
+    );
+
+    // Check for non-manifold points (surface pinched at point)
+    allBoundary.checkPointManifold(false, &singleCellFeaturePointSet);
+
+    // Check for non-manifold edges (surface pinched at edge)
+    const labelListList& edgeFaces = allBoundary.edgeFaces();
+    const labelList& meshPoints = allBoundary.meshPoints();
+
+    forAll(edgeFaces, edgeI)
+    {
+        const labelList& eFaces = edgeFaces[edgeI];
+
+        if (eFaces.size() > 2)
+        {
+            const edge& e = allBoundary.edges()[edgeI];
+
+            //Info<< "Detected non-manifold boundary edge:" << edgeI
+            //    << " coords:"
+            //    << allBoundary.points()[meshPoints[e[0]]]
+            //    << allBoundary.points()[meshPoints[e[1]]] << endl;
+
+            singleCellFeaturePointSet.insert(meshPoints[e[0]]);
+            singleCellFeaturePointSet.insert(meshPoints[e[1]]);
+        }
+    }
+
+    // Check for features.
+    forAll(edgeFaces, edgeI)
+    {
+        const labelList& eFaces = edgeFaces[edgeI];
+
+        if (eFaces.size() == 2)
+        {
+            label f0 = eFaces[0];
+            label f1 = eFaces[1];
+
+            // check angle
+            const vector& n0 = allBoundary.faceNormals()[f0];
+            const vector& n1 = allBoundary.faceNormals()[f1];
+
+            if ((n0 & n1) < minCos)
+            {
+                const edge& e = allBoundary.edges()[edgeI];
+                label v0 = meshPoints[e[0]];
+                label v1 = meshPoints[e[1]];
+
+                label meshEdgeI = meshTools::findEdge(mesh, v0, v1);
+                featureEdgeSet.insert(meshEdgeI);
+
+                // Check if convex or concave by looking at angle
+                // between face centres and normal
+                vector c1c0
+                (
+                    allBoundary[f1].centre(allBoundary.points())
+                  - allBoundary[f0].centre(allBoundary.points())
+                );
+
+                if (concaveMultiCells && (c1c0 & n0) > SMALL)
+                {
+                    // Found concave edge. Make into multiCell features
+                    Info<< "Detected concave feature edge:" << edgeI
+                        << " cos:" << (c1c0 & n0)
+                        << " coords:"
+                        << allBoundary.points()[v0]
+                        << allBoundary.points()[v1]
+                        << endl;
+
+                    singleCellFeaturePointSet.erase(v0);
+                    multiCellFeaturePointSet.insert(v0);
+                    singleCellFeaturePointSet.erase(v1);
+                    multiCellFeaturePointSet.insert(v1);
+                }
+                else
+                {
+                    // Convex. singleCell feature.
+                    if (!multiCellFeaturePointSet.found(v0))
+                    {
+                        singleCellFeaturePointSet.insert(v0);
+                    }
+                    if (!multiCellFeaturePointSet.found(v1))
+                    {
+                        singleCellFeaturePointSet.insert(v1);
+                    }
+                }
+            }
+        }
+    }
+
+
+    // 3. Mark all feature faces
+    // ~~~~~~~~~~~~~~~~~~~~~~~~~
+
+    // Face centres that need inclusion in the dual mesh
+    labelHashSet featureFaceSet(mesh.nFaces()-mesh.nInternalFaces());
+    // A. boundary faces.
+    for (label faceI = mesh.nInternalFaces(); faceI < mesh.nFaces(); faceI++)
+    {
+        featureFaceSet.insert(faceI);
+    }
+
+    // B. face zones.
+    const faceZoneMesh& faceZones = mesh.faceZones();
+
+    if (doNotPreserveFaceZones)
+    {
+        if (faceZones.size() > 0)
+        {
+            WarningIn("simpleMarkFeatures(..)")
+                << "Detected " << faceZones.size()
+                << " faceZones. These will not be preserved."
+                << endl;
+        }
+    }
+    else
+    {
+        if (faceZones.size() > 0)
+        {
+            Info<< "Detected " << faceZones.size()
+                << " faceZones. Preserving these by marking their"
+                << " points, edges and faces as features." << endl;
+        }
+
+        forAll(faceZones, zoneI)
+        {
+            const faceZone& fz = faceZones[zoneI];
+
+            Info<< "Inserting all faces in faceZone " << fz.name()
+                << " as features." << endl;
+
+            forAll(fz, i)
+            {
+                label faceI = fz[i];
+                const face& f = mesh.faces()[faceI];
+                const labelList& fEdges = mesh.faceEdges()[faceI];
+
+                featureFaceSet.insert(faceI);
+                forAll(f, fp)
+                {
+                    // Mark point as multi cell point (since both sides of
+                    // face should have different cells)
+                    singleCellFeaturePointSet.erase(f[fp]);
+                    multiCellFeaturePointSet.insert(f[fp]);
+
+                    // Make sure there are points on the edges.
+                    featureEdgeSet.insert(fEdges[fp]);
+                }
+            }
+        }
+    }
+
+    // Transfer to arguments
+    featureFaces = featureFaceSet.toc();
+    featureEdges = featureEdgeSet.toc();
+    singleCellFeaturePoints = singleCellFeaturePointSet.toc();
+    multiCellFeaturePoints = multiCellFeaturePointSet.toc();
+}
+
+
+// Dump features to .obj files
+void dumpFeatures
+(
+    const polyMesh& mesh,
+    const labelList& featureFaces,
+    const labelList& featureEdges,
+    const labelList& singleCellFeaturePoints,
+    const labelList& multiCellFeaturePoints
+)
+{
+    {
+        OFstream str("featureFaces.obj");
+        Info<< "Dumping centres of featureFaces to obj file " << str.name()
+            << endl;
+        forAll(featureFaces, i)
+        {
+            meshTools::writeOBJ(str, mesh.faceCentres()[featureFaces[i]]);
+        }
+    }
+    {
+        OFstream str("featureEdges.obj");
+        Info<< "Dumping featureEdges to obj file " << str.name() << endl;
+        label vertI = 0;
+
+        forAll(featureEdges, i)
+        {
+            const edge& e = mesh.edges()[featureEdges[i]];
+            meshTools::writeOBJ(str, mesh.points()[e[0]]);
+            vertI++;
+            meshTools::writeOBJ(str, mesh.points()[e[1]]);
+            vertI++;
+            str<< "l " << vertI-1 << ' ' << vertI << nl;
+        }
+    }
+    {
+        OFstream str("singleCellFeaturePoints.obj");
+        Info<< "Dumping featurePoints that become a single cell to obj file "
+            << str.name() << endl;
+        forAll(singleCellFeaturePoints, i)
+        {
+            meshTools::writeOBJ(str, mesh.points()[singleCellFeaturePoints[i]]);
+        }
+    }
+    {
+        OFstream str("multiCellFeaturePoints.obj");
+        Info<< "Dumping featurePoints that become multiple cells to obj file "
+            << str.name() << endl;
+        forAll(multiCellFeaturePoints, i)
+        {
+            meshTools::writeOBJ(str, mesh.points()[multiCellFeaturePoints[i]]);
+        }
+    }
+}
+
+
 int main(int argc, char *argv[])
 {
     argList::noParallel();
+    timeSelector::addOptions(true, false);
+
     argList::validArgs.append("feature angle[0-180]");
+    argList::validOptions.insert("splitAllFaces", "");
+    argList::validOptions.insert("concaveMultiCells", "");
+    argList::validOptions.insert("doNotPreserveFaceZones", "");
     argList::validOptions.insert("overwrite", "");
 
 #   include "setRootCase.H"
 #   include "createTime.H"
-#   include "createPolyMesh.H"
+
+    instantList timeDirs = timeSelector::select0(runTime, args);
+
+#   include "createMesh.H"
+
+    const word oldInstance = mesh.pointsInstance();
+
+    // Mark boundary edges and points.
+    // (Note: in 1.4.2 we can use the built-in mesh point ordering
+    //  facility instead)
+    PackedBoolList isBoundaryEdge(mesh.nEdges());
+    for (label faceI = mesh.nInternalFaces(); faceI < mesh.nFaces(); faceI++)
+    {
+        const labelList& fEdges = mesh.faceEdges()[faceI];
+
+        forAll(fEdges, i)
+        {
+            isBoundaryEdge.set(fEdges[i], 1);
+        }
+    }
 
     scalar featureAngle(readScalar(IStringStream(args.additionalArgs()[0])()));
-    bool overwrite = args.options().found("overwrite");
 
     scalar minCos = Foam::cos(featureAngle * mathematicalConstant::pi/180.0);
 
@@ -58,18 +393,154 @@ int main(int argc, char *argv[])
         << "minCos :" << minCos << endl
         << endl;
 
-    polyDualMesh dualMesh(mesh, minCos);
+
+    const bool splitAllFaces = args.optionFound("splitAllFaces");
+    if (splitAllFaces)
+    {
+        Info<< "Splitting all internal faces to create multiple faces"
+            << " between two cells." << nl
+            << endl;
+    }
+
+    const bool overwrite = args.optionFound("overwrite");
+    const bool doNotPreserveFaceZones = args.optionFound
+    (
+        "doNotPreserveFaceZones"
+    );
+    const bool concaveMultiCells = args.optionFound("concaveMultiCells");
+    if (concaveMultiCells)
+    {
+        Info<< "Generating multiple cells for points on concave feature edges."
+            << nl << endl;
+    }
+
+
+    // Face(centre)s that need inclusion in the dual mesh
+    labelList featureFaces;
+    // Edge(centre)s  ,,
+    labelList featureEdges;
+    // Points (that become a single cell) that need inclusion in the dual mesh
+    labelList singleCellFeaturePoints;
+    // Points (that become a multiple cells)        ,,
+    labelList multiCellFeaturePoints;
+
+    // Sample implementation of feature detection.
+    simpleMarkFeatures
+    (
+        mesh,
+        isBoundaryEdge,
+        featureAngle,
+        concaveMultiCells,
+        doNotPreserveFaceZones,
+
+        featureFaces,
+        featureEdges,
+        singleCellFeaturePoints,
+        multiCellFeaturePoints
+    );
+
+    // If we want to split all polyMesh faces into one dualface per cell
+    // we are passing through we also need a point
+    // at the polyMesh facecentre and edgemid of the faces we want to
+    // split.
+    if (splitAllFaces)
+    {
+        featureEdges = identity(mesh.nEdges());
+        featureFaces = identity(mesh.nFaces());
+    }
+
+    // Write obj files for debugging
+    dumpFeatures
+    (
+        mesh,
+        featureFaces,
+        featureEdges,
+        singleCellFeaturePoints,
+        multiCellFeaturePoints
+    );
+
+
+
+    // Read objects in time directory
+    IOobjectList objects(mesh, runTime.timeName());
+
+    // Read vol fields.
+    PtrList<volScalarField> vsFlds;
+    ReadFields(mesh, objects, vsFlds);
+
+    PtrList<volVectorField> vvFlds;
+    ReadFields(mesh, objects, vvFlds);
+
+    PtrList<volSphericalTensorField> vstFlds;
+    ReadFields(mesh, objects, vstFlds);
+
+    PtrList<volSymmTensorField> vsymtFlds;
+    ReadFields(mesh, objects, vsymtFlds);
+
+    PtrList<volTensorField> vtFlds;
+    ReadFields(mesh, objects, vtFlds);
+
+    // Read surface fields.
+    PtrList<surfaceScalarField> ssFlds;
+    ReadFields(mesh, objects, ssFlds);
+
+    PtrList<surfaceVectorField> svFlds;
+    ReadFields(mesh, objects, svFlds);
+
+    PtrList<surfaceSphericalTensorField> sstFlds;
+    ReadFields(mesh, objects, sstFlds);
+
+    PtrList<surfaceSymmTensorField> ssymtFlds;
+    ReadFields(mesh, objects, ssymtFlds);
+
+    PtrList<surfaceTensorField> stFlds;
+    ReadFields(mesh, objects, stFlds);
+
+
+    // Topo change container
+    polyTopoChange meshMod(mesh.boundaryMesh().size());
+
+    // Mesh dualiser engine
+    meshDualiser dualMaker(mesh);
+
+    // Insert all commands into polyTopoChange to create dual of mesh. This does
+    // all the hard work.
+    dualMaker.setRefinement
+    (
+        splitAllFaces,
+        featureFaces,
+        featureEdges,
+        singleCellFeaturePoints,
+        multiCellFeaturePoints,
+        meshMod
+    );
+
+    // Create mesh, return map from old to new mesh.
+    autoPtr<mapPolyMesh> map = meshMod.changeMesh(mesh, false);
+
+    // Update fields
+    mesh.updateMesh(map);
+
+    // Optionally inflate mesh
+    if (map().hasMotionPoints())
+    {
+        mesh.movePoints(map().preMotionPoints());
+    }
 
     if (!overwrite)
     {
         runTime++;
     }
+    else
+    {
+        mesh.setInstance(oldInstance);
+    }
 
-    Pout<< "Writing dualMesh to " << runTime.timeName() << endl;
+    Info<< "Writing dual mesh to " << runTime.timeName() << endl;
 
-    dualMesh.write();
+    mesh.write();
 
-    Info << "End\n" << endl;
+    Info<< "End\n" << endl;
 
     return 0;
 }

applications/utilities/mesh/conversion/sammToFoam/readCouples.C

@@ -136,7 +136,7 @@ void sammMesh::readCouples()
 
             forAll (curFaces, faceI)
             {
-                if (curFaces[faceI].size() == 0)
+                if (curFaces[faceI].empty())
                 {
                     zeroSizeFound++;
                 }
@@ -153,7 +153,7 @@ void sammMesh::readCouples()
 
                 forAll (oldFaces, faceI)
                 {
-                    if (oldFaces[faceI].size() > 0)
+                    if (oldFaces[faceI].size())
                     {
                         curFaces[nFaces] = oldFaces[faceI];
 

applications/utilities/mesh/conversion/sammToFoam/sammMesh.C

@@ -90,13 +90,13 @@ const label sammMesh::shapeFaceLookup[19][9] =
 List<const cellModel*> sammMesh::sammShapeLookup
 (
     256,
-    reinterpret_cast<cellModel*>(NULL)
+    reinterpret_cast<cellModel*>(0)
 );
 
 List<const label*> sammMesh::sammAddressingTable
 (
     256,
-    reinterpret_cast<label*>(NULL)
+    reinterpret_cast<label*>(0)
 );
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //

applications/utilities/mesh/conversion/sammToFoam/sammToFoam.C

@@ -51,10 +51,7 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
 #   include "createTime.H"
 
@@ -69,7 +66,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "End" << nl << endl;
 
-    return(0);
+    return 0;
 }
 
 

applications/utilities/mesh/conversion/starToFoam/createCoupleMatches.C

@@ -45,12 +45,11 @@ void starMesh::createCoupleMatches()
     // existing points list
 
     // Estimate the number of cells affected by couple matches
-    const label cellMapSize =
+    const label cellMapSize = min
-        min
+    (
-        (
+        cellShapes_.size()/10,
-            cellShapes_.size()/10,
+        couples_.size()*2
-            couples_.size()*2
+    );
-        );
 
     // Store newly created faces for each cell
     Map<SLList<face> > cellAddedFaces(cellMapSize);
@@ -322,7 +321,7 @@ void starMesh::createCoupleMatches()
 
                                     // A new point is created. Warning:
                                     // using original edge for accuracy.
-                                    // 
+                                    //
                                     coupleFacePoints.append
                                         (P + alpha*curMasterEdge.vec(points_));
                                 }
@@ -338,7 +337,7 @@ void starMesh::createCoupleMatches()
                         // master edge and vice versa. The problem is that
                         // no symmetry exists, i.e. both operations needs
                         // to be done separately for both master and slave
-                        // side. 
+                        // side.
 
                         // Master side
                         // check if the first or second point of slave edge is
@@ -625,11 +624,11 @@ void starMesh::createCoupleMatches()
 
             // Eliminate all zero-length edges
             face newMasterFace(labelList(tmpMasterFace.size(), labelMax));
-          
+
             // insert first point by hand. Careful: the first one is
             // used for comparison to allow the edge collapse across
             // point zero.
-            // 
+            //
             newMasterFace[0] = tmpMasterFace[0];
             label nMaster = 0;
 
@@ -823,7 +822,7 @@ void starMesh::createCoupleMatches()
             // insert first point by hand. Careful: the first one is
             // used for comparison to allow the edge collapse across
             // point zero.
-            // 
+            //
             newSlaveFace[0] = tmpSlaveFace[0];
             label nSlave = 0;
 
@@ -885,7 +884,7 @@ void starMesh::createCoupleMatches()
                 << "newSlaveEdges: " << newSlaveEdges << endl;
 #           endif
 
-            edge startEdge;
+            edge startEdge(-1, -1);
 
             // Remember where the start edge was found:
             // 0 for not found
@@ -1097,7 +1096,7 @@ void starMesh::createCoupleMatches()
                         << "edges to consider: " << edgesToConsider << endl;
 #                   endif
 
-                    if (edgesToConsider.size() == 0)
+                    if (edgesToConsider.empty())
                     {
                         FatalErrorIn("void starMesh::createCoupleMatches()")
                             << setprecision(12)
@@ -1420,7 +1419,7 @@ void starMesh::createCoupleMatches()
         } // end of arbitrary match
     }
 
-    if (couples_.size() > 0)
+    if (couples_.size())
     {
         // Loop through all cells and reset faces for removal to zero size
         const labelList crfToc = cellRemovedFaces.toc();
@@ -1442,7 +1441,7 @@ void starMesh::createCoupleMatches()
                 cellFaces_[curCell][curRemovedFacesIter()].setSize(0);
             }
 
-            if (curRemovedFaces.size() > 0)
+            if (curRemovedFaces.size())
             {
                 // reset the shape pointer to unknown
                 cellShapes_[curCell] = cellShape(*unknownPtr_, labelList(0));
@@ -1468,7 +1467,7 @@ void starMesh::createCoupleMatches()
             // copy original faces that have not been removed
             forAll (oldFaces, faceI)
             {
-                if (oldFaces[faceI].size() > 0)
+                if (oldFaces[faceI].size())
                 {
                     newFaces[nNewFaces] = oldFaces[faceI];
                     nNewFaces++;
@@ -1491,7 +1490,7 @@ void starMesh::createCoupleMatches()
             // reset the size of the face list
             newFaces.setSize(nNewFaces);
 
-            if (curAddedFaces.size() > 0)
+            if (curAddedFaces.size())
             {
                 // reset the shape pointer to unknown
                 cellShapes_[curCell] = cellShape(*unknownPtr_, labelList(0));

applications/utilities/mesh/conversion/starToFoam/readCells.C

@@ -48,7 +48,7 @@ void starMesh::addRegularCell
     label regularTypeFlag = -1;
 
     // grab the shape from the table
-    const cellModel* curModelPtr = reinterpret_cast<cellModel*>(NULL);
+    const cellModel* curModelPtr = reinterpret_cast<cellModel*>(0);
 
     if      // Tetrahedron
     (
@@ -130,7 +130,7 @@ void starMesh::addSAMMcell
 
     // grab the shape from the table
     label sammTypeFlag = -1;
-    const cellModel* curModelPtr = reinterpret_cast<cellModel*>(NULL);
+    const cellModel* curModelPtr = reinterpret_cast<cellModel*>(0);
 
     switch (typeFlag)
     {

applications/utilities/mesh/conversion/starToFoam/starMesh.C

@@ -264,7 +264,7 @@ starMesh::starMesh
 
     readCouples();
 
-    if (couples_.size() > 0)
+    if (couples_.size())
     {
         createCoupleMatches();
     }

applications/utilities/mesh/conversion/starToFoam/starToFoam.C

@@ -51,10 +51,7 @@ int main(int argc, char *argv[])
     }
 
     scalar scaleFactor = 1.0;
-    if (args.options().found("scale"))
+    args.optionReadIfPresent("scale", scaleFactor);
-    {
-        scaleFactor = atof(args.options()["scale"].c_str());
-    }
 
 #   include "createTime.H"
 
@@ -69,7 +66,7 @@ int main(int argc, char *argv[])
 
     Info<< nl << "End" << nl << endl;
 
-    return(0);
+    return 0;
 }
 
 

applications/utilities/mesh/conversion/tetgenToFoam/beam.1.ele

@@ -0,0 +1,726 @@
+724  4  0
+    1      48   170    84   171
+    2      78   202   171   213
+    3      16    48    45   171
+    4     128   159   108   191
+    5     167   168    77   200
+    6      72   166    25   199
+    7       8   197    44   198
+    8     162   166    72   199
+    9      50    84    83   196
+   10      67   126    17   172
+   11      48   125    45   171
+   12     103   150    63   210
+   13     102   177    59   194
+   14     119   172    75   213
+   15      10   157    69   208
+   16     126   167   119   172
+   17      30   157   107   190
+   18      52   182   180   209
+   19      88   192   105   205
+   20     152   194   104   203
+   21     107   187   150   190
+   22      23   141    86   192
+   23      97    99   140   184
+   24      55   189   133   207
+   25      97   138    31   151
+   26      35   142    60   194
+   27      27   118    74   164
+   28     101   127    21   152
+   29     126   171   167   200
+   30      90   109    55   133
+   31      21   178   152   203
+   32     134   173    93   174
+   33      27    83    50    84
+   34      85   127    29   211
+   35     164   176   111   202
+   36      65   153   105   156
+   37     149   186    59   203
+   38      88    87   129   130
+   39      23   141    97   151
+   40     177   178   136   203
+   41      76   164    43   198
+   42      84   176   126   202
+   43      89   116    90   133
+   44      40   112    71   113
+   45      40    70    71   112
+   46     125   126    45   171
+   47     133   161    66   176
+   48      65   105    14   156
+   49      66   189   187   207
+   50      67    68    38   110
+   51      60   144    62    61
+   52     124   165    33   204
+   53      52   128   108   191
+   54      26    90    89   116
+   55     114   164    76   198
+   56     150   190   104   192
+   57      59   186   102   194
+   58      69   157   103   190
+   59     120   170   196   122
+   60     116   164   117   197
+   61       5   112    41   113
+   62      37   110   107   157
+   63     132   181    32   189
+   64     121   122    18   196
+   65      84   123    27   202
+   66      73   195   163   199
+   67     182   204   137   209
+   68     140    97    23    99
+   69      96   136   135   178
+   70      28    80    57    81
+   71      23    99    97   141
+   72     153   156    63   193
+   73     100   152    21   178
+   74     148   151   146   190
+   75     115    43    15   213
+   76     138   186   139   188
+   77      48   125    84   170
+   78     105   153    65   155
+   79     108   204   182   209
+   80     104   193   192   205
+   81      18    83    40   121
+   82      32   111    89   133
+   83      59    95    94   149
+   84     135   136    34   178
+   85      95   137   132   189
+   86      57    80    52   108
+   87     104   151   149   186
+   88     186   194    59   203
+   89     152   191   150   193
+   90     115   197     8   198
+   91     170   125   201    48
+   92     140   183     7   184
+   93       9   108    52   128
+   94      70     5    71   112
+   95      44   116    26   117
+   96      84   126   125   171
+   97      66   159   126   161
+   98      52   191   108   209
+   99      41   112    72   113
+  100     108   191   159   209
+  101     125   170   201   160
+  102      77   168   167   169
+  103     103   157    30   190
+  104      52     9    57   108
+  105     127   152   101   193
+  106      38    68    37   110
+  107     133   189    66   207
+  108       8    76   115   198
+  109      65   153   143   154
+  110      31   151   138   206
+  111      62   144     6    61
+  112     192   193   105   205
+  113     153   154   101   211
+  114      72   163   111   199
+  115      13   101   100   212
+  116     104   187   150   191
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+# Generated by tetgen -qfa0.005 beam.poly 

applications/utilities/mesh/conversion/tetgenToFoam/beam.1.node

@@ -0,0 +1,215 @@
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+  16    0  0.49964989999999998  0
+  17    0.62483357601847556  1  0.49991643678795222
+  18    0  0  0.5
+  19    0  0.5  1
+  20    0.62494657145582122  0.49985790875808178  0
+  21    1.375120204581187  0  0.4997949845615941
+  22    2  0.5  1
+  23    2  1  0.5
+  24    0.499834  1  0
+  25    0.50029699999999999  0  1
+  26    0.49972250000000001  1  1
+  27    0  0.50000006130646835  0.49999993869353165
+  28    0.50002349999999995  0  0
+  29    1.5000235  0  0
+  30    1.1458145624989733  0.5000553177266871  0
+  31    1.3748336567109987  1  0.5000836868059465
+  32    0.75044549999999999  0.49971323947400004  1
+  33    0.75044549999999999  0  0.50013668162500002
+  34    1.500297  0  1
+  35    2  0.49999999206099965  0.49999999206099965
+  36    1.4997225000000001  1  1
+  37    0.88530655619767451  0.69523571541331353  0
+  38    0.74975100000000006  1  0
+  39    0.99985800700011418  1  0.39062501526316751
+  40    0  0.2500000613064608  0.7499999386935392
+  41    0.2501485  0  1
+  42    0.37527044007359472  0.62466041202689604  1
+  43    0  0.7497720581817594  0.74999999997204392
+  44    0.24986125000000001  1  1
+  45    0.31241083060970776  0.68739558038665782  0
+  46    0  1  0.25022814999999998
+  47    0  0.74982495000000005  0
+  48    0.3125356465289606  0.31239559711921033  0
+  49    0.37524548555134551  0  0.37523962153691648
+  50    0  0.25000000002145584  0.25017492745143088
+  51    1.2500352499999998  0  0
+  52    1.0626973305232652  0  0.34361890927552119
+  53    1.4998339999999999  1  0
+  54    0.74958374999999999  1  1
+  55    0.88519156134454835  1  0.69523493182271912
+  56    0.75044549999999999  0  1
+  57    0.75003524999999993  0  0
+  58    0.88545457775712011  0.3046775110714553  0
+  59    1.4999999173907641  0.49999999435116604  1
+  60    2  0.25010760364761792  0.74999999999829137
+  61    2  0.25  1
+  62    2  0  0.75010765000000001
+  63    1.5729133203896351  0.4271084905205621  0
+  64    2  0  0.25010765000000001
+  65    2  0.25006299999999998  0
+  66    0.81619988117037301  0.51616065956439328  0.48387527405505287
+  67    0.62479250000000008  1  0.23434098330631092
+  68    0.62479250000000008  0.7655391212272894  0
+  69    1.2497509999999998  1  0
+  70    0  0.25  1
+  71    0  0  0.75
+  72    0.37522274999999999  0.29980854989635936  1
+  73    0.37522274999999999  0  0.70013946473134281
+  74    0  0.49988605975809192  0.74988593714516283
+  75    0.31255174452459605  1  0.65638401293888804
+  76    0  0.75  1
+  77    0.249917  1  0
+  78    0  0.70831779089254521  0.29167340665919461
+  79    0.25001174999999998  0  0
+  80    0.62526649037406934  0  0.25017085386153537
+  81    0.625029375  0.23429805042184107  0
+  82    0  0.24982494999999999  0
+  83    0  0.25008755567468249  0.50008743306175329
+  84    0.33552291795286748  0.37713361953826796  0.37295234921245662
+  85    1.3275022682494733  0.27703395451399626  0
+  86    1.6873917295541676  1  0.31254602883562033
+  87    1.7393002110516891  0.73944000928409781  0
+  88    2  0.7499999999989998  0.25006298412499983
+  89    0.62528740222670842  0.74964177558619371  1
+  90    0.62465312500000003  1  0.76556323888302447
+  91    0.87551975000000004  0.24985661973700002  1
+  92    0.87551975000000004  0  0.75006834081249996
+  93    1.1922864636768418  1  0.75390684273024755
+  94    1.24958375  0.74986113453803516  1
+  95    1.1698804466514103  0.41956399899988917  1
+  96    1.187959730551635  0  0.74997433471920583
+  97    1.6874419282782818  1  0.68754603555472626
+  98    1.7498612499999999  1  1
+  99    2  0.74999999206099988  0.74999999206099988
+ 100    1.6597700161872737  0  0.69432640578660343
+ 101    1.6597808229817657  0  0.30542952755181008
+ 102    1.7499999601075902  0.375  1
+ 103    1.3990667318832528  0.69603906683685635  0
+ 104    1.4950021306707608  0.49065317884606224  0.49500212996719484
+ 105    2  0.37509449999999989  0.24996850198475024
+ 106    0.82837583873678577  0.49993500845038119  0
+ 107    1.0695558475797649  0.66971322958604163  0.29687786818700823
+ 108    0.85307867962811157  0.24362257622712302  0.31516017245746403
+ 109    0.82827226523186892  1  0.49992109713449329
+ 110    0.85617934854666022  1  0.20723770847200895
+ 111    0.52956259724790877  0.46221182650782827  0.70815142735106607
+ 112    0.197844687328108  0.19781366296788089  1
+ 113    0.19785716305721113  0  0.8021738538924329
+ 114    0.2208783106844166  0.46225714309073845  1
+ 115    0  1  0.75022814999999998
+ 116    0.43264896150206789  1  0.81375076634557386
+ 117    0.374791875  0.83312128766119486  1
+ 118    0  0.72915434172921567  0.52082680685839422
+ 119    0.25758862433333551  1  0.37534222499999997
+ 120    0  0  0.25
+ 121    0.22089000562634489  0  0.53767874257955828
+ 122    0.21890193241166289  0  0.21890047052636122
+ 123    0  0.48262354769989868  0.23265983080935737
+ 124    0.52955330709238257  0  0.53770034194467331
+ 125    0.49219718763882514  0.367036574432759  0
+ 126    0.5505556528350013  0.63265541955504201  0.30493806376468496
+ 127    1.4081582558189005  0  0.24254676799800692
+ 128    1.1015512434437607  0.21206527974784434  0
+ 129    1.7499169999999999  1  0
+ 130    2  0.75006299999999992  0
+ 131    2  1  0.25
+ 132    0.99401036538229792  0.63676792199224752  1
+ 133    0.75067050430146165  0.71769786903092825  0.71464771158468776
+ 134    1.24958375  1  1
+ 135    1.2504455000000001  0  1
+ 136    1.3860715978416591  0.24993221667186555  1
+ 137    1.0317202752404047  0.31469238410894046  0.6853270709080328
+ 138    1.4426349216014702  1  0.74140038799848562
+ 139    1.6247918750000001  0.75006931305374525  1
+ 140    2  1  0.75
+ 141    2  0.74996849602949978  0.50003148809249964
+ 142    2  0.24999994966813449  0.49999998078418173
+ 143    1.7500117500000001  0  0
+ 144    1.7501484999999999  0  1
+ 145    2  0.5000537978534545  0.74994618626854503
+ 146    1.3747924999999996  1  0.23440908488585499
+ 147    1.5571177737167572  0.81232629338982021  0
+ 148    1.5545253193695066  1  0.17972930755262501
+ 149    1.3104200347998118  0.56041577372755713  0.74814782862252316
+ 150    1.3685266838244452  0.48564116582667954  0.21802764397288932
+ 151    1.5873602781685263  0.78126669962189421  0.50005942609143139
+ 152    1.5838618227448735  0.20899413185535243  0.49987585715718413
+ 153    1.7498120256325995  0.25018792583716926  0
+ 154    1.8148371462917434  0  0.18519382949207305
+ 155    2  0.18752406345187056  0.18753523208397008
+ 156    1.7770110643184227  0.51886547556217666  0
+ 157    1.1389013076817112  0.76226887437066193  0
+ 158    1.1602175406966813  1  0.53828850106094039
+ 159    0.90095306490776128  0.48470516503498373  0.2446998657917499
+ 160    0.57742475390278236  0.27551969863450299  0.27345305390889807
+ 161    0.81036655925196366  0.7630643710333207  0.35054165377955776
+ 162    0.52956259724790877  0.46221182650782827  1
+ 163    0.29250079461431827  0.2842960350422109  0.71570127112180726
+ 164    0.27385619515889037  0.6248453002643185  0.71436194557321087
+ 165    0.62168045737651678  0  0.77560610491729931
+ 166    0.62537124999999993  0.2188435803315899  1
+ 167    0.40196038774740384  1  0.20267603513549107
+ 168    0.17704223351222992  0.82288246470050785  0
+ 169    0.18892018646284411  1  0.18899622733072144
+ 170    0.23373058746113159  0.23679172957531613  0.21078402860060638
+ 171    0.24428427259573549  0.59937304517793366  0.24724219230200442
+ 172    0.42388190576270124  1  0.4887158204143946
+ 173    1.0208555875954755  1  0.81817459887813815
+ 174    1.0669175695053206  0.81733378836053194  1
+ 175    0.8464712840664248  0.80134170756139955  1
+ 176    0.60552202714220704  0.62419153018194229  0.54239960836207701
+ 177    1.606777848712118  0.19973253606683206  1
+ 178    1.4250560553222698  0  0.732249791887851
+ 179    1.12551975  0.19352873225326209  1
+ 180    1.1620342234529084  0  0.53548179044497457
+ 181    0.77419059143108437  0.35536625456813642  0.76865650139332142
+ 182    0.95600842566592681  0  0.52050427577014857
+ 183    2  0.75  1
+ 184    1.8229055680968635  1  0.82294606919028224
+ 185    1.8124074661770861  0.8124421408239394  1
+ 186    1.6847465495324894  0.55699324455967203  0.74450659675858755
+ 187    1.1945125727535346  0.47020737648361044  0.48501348343009743
+ 188    1.4371531545555845  0.81243056656291324  1
+ 189    1.0230031981183827  0.60745624022002409  0.70905352953001077
+ 190    1.3178218537541635  0.74283221838842173  0.24644567916733129
+ 191    1.2298563370114035  0.23209604059822986  0.27403980288191482
+ 192    1.7289412043422971  0.73378563235104455  0.27218740896208421
+ 193    1.6944192651948711  0.39497422853539144  0.28096087015676863
+ 194    1.719021973042385  0.27206088666699435  0.73925099693622187
+ 195    0.51628118103442489  0.26487001488387318  0.53136856951372224
+ 196    0.22693818747394334  0.22584860839480125  0.50499300132112901
+ 197    0.18870598201308805  1  0.81131589108741564
+ 198    0.18140974929389231  0.81855222162009078  1
+ 199    0.52377345173705003  0.22575111801259504  0.77599180569982884
+ 200    0.44512574719134834  0.82031319413422632  0
+ 201    0.43769402753141229  0  0.18763960779463965
+ 202    0.23194582827732274  0.56348972010969589  0.48517047319960538
+ 203    1.404605953982319  0.2885118284317002  0.71332319773860509
+ 204    0.83285106746651061  0.22679389369216291  0.56316489552371896
+ 205    1.746191712341544  0.57096666984982924  0.48834249131610469
+ 206    1.2698479063322867  0.73902081556323673  0.53223169180184582
+ 207    1.0027339377070847  0.7783240018776667  0.51915438810718473
+ 208    1.1247094999999998  1  0.19525173141898322
+ 209    1.0585177272595161  0.22306568484158776  0.45497453797743681
+ 210    1.5766743500280587  0.62019545180903912  0
+ 211    1.5362846212581589  0.2135856104587727  0
+ 212    1.7956396187713533  0.19223457391785517  0.37621602432494938
+ 213    0.2338562054207384  0.80644498148268706  0.52587899633894741
+# Generated by tetgen -qfa0.005 beam.poly 

applications/utilities/mesh/conversion/tetgenToFoam/tetgenToFoam.C

@@ -23,7 +23,7 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Reads .ele and .node and .face files as written by tetgen.
+    Converts .ele and .node and .face files, written by tetgen.
 
     Make sure to use add boundary attributes to the smesh file
     (5 fifth column in the element section)
@@ -54,8 +54,9 @@ Description
 NOTE:
 - for some reason boundary faces point inwards. I just reverse them
 always. Might use some geometric check instead.
-- marked faces might not actually be boundary faces of mesh. This is not handled
+- marked faces might not actually be boundary faces of mesh.
-and you'll have to run without face file (-noFaceFile option)
+This is hopefully handled now by first constructing without boundaries
+and then reconstructing with boundary faces.
 
 \*---------------------------------------------------------------------------*/
 
@@ -69,20 +70,40 @@ using namespace Foam;
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+// Find label of face.
+label findFace(const primitiveMesh& mesh, const face& f)
+{
+    const labelList& pFaces = mesh.pointFaces()[f[0]];
+
+    forAll(pFaces, i)
+    {
+        label faceI = pFaces[i];
+
+        if (mesh.faces()[faceI] == f)
+        {
+            return faceI;
+        }
+    }
+
+    FatalErrorIn("findFace(const primitiveMesh&, const face&)")
+        << "Cannot find face " << f << " in mesh." << abort(FatalError);
+
+    return -1;
+}
+
+
 // Main program:
 
 int main(int argc, char *argv[])
 {
     argList::validArgs.append("file prefix");
     argList::validOptions.insert("noFaceFile", "");
-    argList::validOptions.insert("overwrite", "");
 
 #   include "setRootCase.H"
 #   include "createTime.H"
 
 
-    bool readFaceFile = !args.options().found("noFaceFile");
+    bool readFaceFile = !args.optionFound("noFaceFile");
-    bool overwrite = args.options().found("overwrite");
 
     fileName prefix(args.additionalArgs()[0]);
 
@@ -108,14 +129,14 @@ int main(int argc, char *argv[])
         Info<< "Reading .face file for boundary information" << nl << endl;
     }
 
-    if (!exists(nodeFile) || !exists(eleFile))
+    if (!isFile(nodeFile) || !isFile(eleFile))
     {
         FatalErrorIn(args.executable())
             << "Cannot read " << nodeFile << " or " << eleFile
             << exit(FatalError);
     }
 
-    if (readFaceFile && !exists(faceFile))
+    if (readFaceFile && !isFile(faceFile))
     {
         FatalErrorIn(args.executable())
             << "Cannot read " << faceFile << endl
@@ -139,7 +160,7 @@ int main(int argc, char *argv[])
     {
         nodeStream.getLine(line);
     }
-    while((line.size() > 0) && (line[0] == '#'));
+    while (line.size() && line[0] == '#');
 
     IStringStream nodeLine(line);
 
@@ -172,7 +193,7 @@ int main(int argc, char *argv[])
         {
             nodeStream.getLine(line);
 
-            if ((line.size() > 0) && (line[0] != '#'))
+            if (line.size() && line[0] != '#')
             {
                 IStringStream nodeLine(line);
 
@@ -216,7 +237,7 @@ int main(int argc, char *argv[])
     {
         eleStream.getLine(line);
     }
-    while((line.size() > 0) && (line[0] == '#'));
+    while (line.size() && line[0] == '#');
 
     IStringStream eleLine(line);
 
@@ -260,7 +281,7 @@ int main(int argc, char *argv[])
     {
         eleStream.getLine(line);
 
-        if ((line.size() > 0) && (line[0] != '#'))
+        if (line.size() && line[0] != '#')
         {
             IStringStream eleLine(line);
 
@@ -287,16 +308,44 @@ int main(int argc, char *argv[])
     }
 
 
-    label nPatches = 0;
+    //
+    // Construct mesh with default boundary only
+    //
+
+    autoPtr<polyMesh> meshPtr
+    (
+        new polyMesh
+        (
+            IOobject
+            (
+                polyMesh::defaultRegion,
+                runTime.constant(),
+                runTime
+            ),
+            xferCopy(points),
+            cells,
+            faceListList(0),
+            wordList(0),    // boundaryPatchNames
+            wordList(0),    // boundaryPatchTypes
+            "defaultFaces",
+            polyPatch::typeName,
+            wordList(0)
+        )
+    );
+    const polyMesh& mesh = meshPtr;
 
-    // List of Foam vertices per boundary face
-    faceList boundaryFaces;
 
-    // For each boundary faces the Foam patchID
-    labelList boundaryPatch;
 
     if (readFaceFile)
     {
+        label nPatches = 0;
+
+        // List of Foam vertices per boundary face
+        faceList boundaryFaces;
+
+        // For each boundary faces the Foam patchID
+        labelList boundaryPatch;
+
         //
         // read boundary faces
         //
@@ -307,7 +356,7 @@ int main(int argc, char *argv[])
         {
             faceStream.getLine(line);
         }
-        while((line.size() > 0) && (line[0] == '#'));
+        while (line.size() && line[0] == '#');
 
         IStringStream faceLine(line);
 
@@ -349,7 +398,7 @@ int main(int argc, char *argv[])
         {
             faceStream.getLine(line);
 
-            if ((line.size() > 0) && (line[0] != '#'))
+            if (line.size() && line[0] != '#')
             {
                 IStringStream faceLine(line);
 
@@ -366,48 +415,59 @@ int main(int argc, char *argv[])
                     f[2-i] = nodeToPoint[nodeI];
                 }
 
-                boundaryFaces[faceI] = f;
 
-                if (nFaceAttr > 0)
+                if (findFace(mesh, f) >= mesh.nInternalFaces())
                 {
-                    // First attribute is the region number
+                    boundaryFaces[faceI] = f;
-                    faceLine >> region;
 
-
+                    if (nFaceAttr > 0)
-                    // Get Foam patchID and update region->patch table.
-                    label patchI = 0;
-
-                    Map<label>::iterator patchFind = regionToPatch.find(region);
-
-                    if (patchFind == regionToPatch.end())
                     {
-                        patchI = nPatches;
+                        // First attribute is the region number
+                        faceLine >> region;
 
-                        Info<< "Mapping tetgen region " << region
-                            << " to Foam patch "
-                            << patchI << endl;
 
-                        regionToPatch.insert(region, nPatches++);
+                        // Get Foam patchID and update region->patch table.
-                    }
+                        label patchI = 0;
-                    else
+
-                    {
+                        Map<label>::iterator patchFind =
-                        patchI = patchFind();
+                            regionToPatch.find(region);
+
+                        if (patchFind == regionToPatch.end())
+                        {
+                            patchI = nPatches;
+
+                            Info<< "Mapping tetgen region " << region
+                                << " to Foam patch "
+                                << patchI << endl;
+
+                            regionToPatch.insert(region, nPatches++);
+                        }
+                        else
+                        {
+                            patchI = patchFind();
+                        }
+
+                        boundaryPatch[faceI] = patchI;
+
+                        // Skip remaining attributes
+                        for (label i = 1; i < nFaceAttr; i++)
+                        {
+                            faceLine >> dummy;
+                        }
                     }
 
-                    boundaryPatch[faceI] = patchI;
+                    faceI++;
-
-                    // Skip remaining attributes
-                    for (label i = 1; i < nFaceAttr; i++)
-                    {
-                        faceLine >> dummy;
-                    }
                 }
-
-                faceI++;
             }
         }
 
-        // Print region to patch mapping
+
+        // Trim
+        boundaryFaces.setSize(faceI);
+        boundaryPatch.setSize(faceI);
+
+
+         // Print region to patch mapping
         Info<< "Regions:" << endl;
 
         for
@@ -421,28 +481,23 @@ int main(int argc, char *argv[])
                 << iter() << endl;
         }
         Info<< endl;
-    }
 
 
-    // Storage for boundary faces
+        // Storage for boundary faces
+        faceListList patchFaces(nPatches);
+        wordList patchNames(nPatches);
 
-    faceListList patchFaces(nPatches);
+        forAll(patchNames, patchI)
+        {
+            patchNames[patchI] = word("patch") + name(patchI);
+        }
 
-    wordList patchNames(nPatches);
+        wordList patchTypes(nPatches, polyPatch::typeName);
-
+        word defaultFacesName = "defaultFaces";
-    forAll(patchNames, patchI)
+        word defaultFacesType = polyPatch::typeName;
-    {
+        wordList patchPhysicalTypes(nPatches, polyPatch::typeName);
-        patchNames[patchI] = word("patch") + name(patchI);
-    }
-
-    wordList patchTypes(nPatches, polyPatch::typeName);
-    word defaultFacesName = "defaultFaces";
-    word defaultFacesType = polyPatch::typeName;
-    wordList patchPhysicalTypes(nPatches, polyPatch::typeName);
 
 
-    if (readFaceFile)
-    {
         // Sort boundaryFaces by patch using boundaryPatch.
         List<DynamicList<face> > allPatchFaces(nPatches);
 
@@ -460,39 +515,38 @@ int main(int argc, char *argv[])
             Info<< "    " << patchNames[patchI] << " : "
                 << allPatchFaces[patchI].size() << endl;
 
-            patchFaces[patchI].transfer(allPatchFaces[patchI].shrink());
+            patchFaces[patchI].transfer(allPatchFaces[patchI]);
         }
 
         Info<< endl;
-    }
 
-    if (!overwrite)
-    {
-        runTime++;
-    }
 
-    polyMesh mesh
+        meshPtr.reset
-    (
-        IOobject
         (
-            polyMesh::defaultRegion,
+            new polyMesh
-            runTime.constant(),
+            (
-            runTime
+                IOobject
-        ),
+                (
-        points,
+                    polyMesh::defaultRegion,
-        cells,
+                    runTime.constant(),
-        patchFaces,
+                    runTime
-        patchNames,
+                ),
-        patchTypes,
+                xferMove(points),
-        defaultFacesName,
+                cells,
-        defaultFacesType,
+                patchFaces,
-        patchPhysicalTypes
+                patchNames,
-    );
+                patchTypes,
+                defaultFacesName,
+                defaultFacesType,
+                patchPhysicalTypes
+            )
+        );
+    }
+
 
     Info<< "Writing mesh to " << runTime.constant() << endl << endl;
 
-    mesh.write();
+    meshPtr().write();
-
 
     Info<< "End\n" << endl;
 

applications/utilities/mesh/conversion/writeMeshObj/writeMeshObj.C

@@ -32,11 +32,13 @@ Description
 
     patch_YYY_XXX.obj : all face centres of patch YYY
 
-    Optional: patch faces (as polygons) : patchFaces_YYY_XXX.obj
+    Optional: - patch faces (as polygons) : patchFaces_YYY_XXX.obj
+              - non-manifold edges : patchEdges_YYY_XXX.obj
 
 \*---------------------------------------------------------------------------*/
 
 #include "argList.H"
+#include "timeSelector.H"
 #include "Time.H"
 #include "polyMesh.H"
 #include "OFstream.H"
@@ -50,7 +52,7 @@ using namespace Foam;
 
 void writeOBJ(const point& pt, Ostream& os)
 {
-    os << "v " << pt.x() << ' ' << pt.y() << ' ' << pt.z() << endl;
+    os << "v " << pt.x() << ' ' << pt.y() << ' ' << pt.z() << nl;
 }
 
 // All edges of mesh
@@ -74,8 +76,7 @@ void writePoints(const polyMesh& mesh, const fileName& timeName)
     {
         const edge& e = mesh.edges()[edgeI];
 
-        pointStream << "l " << e.start() + 1 << ' ' << e.end() + 1
+        pointStream << "l " << e.start() + 1 << ' ' << e.end() + 1 << nl;
-            << endl;
     }
 }
 
@@ -276,7 +277,47 @@ void writePatchFaces
             {
                 patchFaceStream << ' ' << f[fp]+1;
             }
-            patchFaceStream << endl;
+            patchFaceStream << nl;
+        }
+    }
+}
+
+
+void writePatchBoundaryEdges
+(
+    const polyMesh& mesh,
+    const fileName& timeName
+)
+{
+    const polyBoundaryMesh& patches = mesh.boundaryMesh();
+
+    forAll(patches, patchI)
+    {
+        const polyPatch& pp = patches[patchI];
+
+        fileName edgeFile
+        (
+            mesh.time().path()
+          / "patchEdges_" + pp.name() + '_' + timeName + ".obj"
+        );
+
+        Info << "Writing patch edges to " << edgeFile << endl;
+
+        OFstream patchEdgeStream(edgeFile);
+
+        forAll(pp.localPoints(), pointI)
+        {
+            writeOBJ(pp.localPoints()[pointI], patchEdgeStream);
+        }
+
+        for (label edgeI = pp.nInternalEdges(); edgeI < pp.nEdges(); edgeI++)
+        {
+            if (pp.edgeFaces()[edgeI].size() == 1)
+            {
+                const edge& e = pp.edges()[edgeI];
+
+                patchEdgeStream<< "l " << e[0]+1 << ' ' << e[1]+1 << nl;
+            }
         }
     }
 }
@@ -336,23 +377,27 @@ void writePointCells
 
 int main(int argc, char *argv[])
 {
+    timeSelector::addOptions();
     argList::validOptions.insert("patchFaces", "");
+    argList::validOptions.insert("patchEdges", "");
     argList::validOptions.insert("cell", "cellI");
     argList::validOptions.insert("face", "faceI");
     argList::validOptions.insert("point", "pointI");
     argList::validOptions.insert("cellSet", "setName");
     argList::validOptions.insert("faceSet", "setName");
+#   include "addRegionOption.H"
 
-#   include "addTimeOptions.H"
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 
-    bool patchFaces = args.options().found("patchFaces");
+    bool patchFaces = args.optionFound("patchFaces");
-    bool doCell = args.options().found("cell");
+    bool patchEdges = args.optionFound("patchEdges");
-    bool doPoint = args.options().found("point");
+    bool doCell     = args.optionFound("cell");
-    bool doFace = args.options().found("face");
+    bool doPoint    = args.optionFound("point");
-    bool doCellSet = args.options().found("cellSet");
+    bool doFace     = args.optionFound("face");
-    bool doFaceSet = args.options().found("faceSet");
+    bool doCellSet  = args.optionFound("cellSet");
+    bool doFaceSet  = args.optionFound("faceSet");
 
 
     Info<< "Writing mesh objects as .obj files such that the object"
@@ -360,50 +405,43 @@ int main(int argc, char *argv[])
         << "(for points, faces, cells) is consistent with"
         << " Foam numbering (starting from 0)." << endl << endl;
 
-    // Get times list
+    instantList timeDirs = timeSelector::select0(runTime, args);
-    instantList Times = runTime.times();
 
-#   include "checkTimeOptions.H"
+#   include "createNamedPolyMesh.H"
 
-    runTime.setTime(Times[startTime], startTime);
+    forAll(timeDirs, timeI)
-
-#   include "createPolyMesh.H"
-
-    bool firstCheck = true;
-
-    for (label i=startTime; i<endTime; i++)
     {
-        runTime.setTime(Times[i], i);
+        runTime.setTime(timeDirs[timeI], timeI);
 
         Info<< "Time = " << runTime.timeName() << endl;
 
         polyMesh::readUpdateState state = mesh.readUpdate();
 
-        if (firstCheck || state != polyMesh::UNCHANGED)
+        if (!timeI || state != polyMesh::UNCHANGED)
         {
             if (patchFaces)
             {
                 writePatchFaces(mesh, runTime.timeName());
-
             }
-            else if (doCell)
+            if (patchEdges)
             {
-                label cellI =
+                writePatchBoundaryEdges(mesh, runTime.timeName());
-                    readLabel(IStringStream(args.options()["cell"])());
+            }
+            if (doCell)
+            {
+                label cellI = args.optionRead<label>("cell");
 
                 writePoints(mesh, cellI, runTime.timeName());
             }
-            else if (doPoint)
+            if (doPoint)
             {
-                label pointI =
+                label pointI = args.optionRead<label>("point");
-                    readLabel(IStringStream(args.options()["point"])());
 
                 writePointCells(mesh, pointI, runTime.timeName());
             }
-            else if (doFace)
+            if (doFace)
             {
-                label faceI =
+                label faceI = args.optionRead<label>("face");
-                    readLabel(IStringStream(args.options()["face"])());
 
                 fileName fName
                 (
@@ -423,9 +461,9 @@ int main(int argc, char *argv[])
 
                 meshTools::writeOBJ(str, faceList(1, f), mesh.points());
             }
-            else if (doCellSet)
+            if (doCellSet)
             {
-                word setName(args.options()["cellSet"]);
+                word setName(args.option("cellSet"));
 
                 cellSet cells(mesh, setName);
 
@@ -435,9 +473,9 @@ int main(int argc, char *argv[])
                 writePoints(mesh, cells.toc(), runTime.timeName());
 
             }
-            else if (doFaceSet)
+            if (doFaceSet)
             {
-                word setName(args.options()["faceSet"]);
+                word setName(args.option("faceSet"));
 
                 faceSet faces(mesh, setName);
 
@@ -466,7 +504,16 @@ int main(int argc, char *argv[])
                     faces.toc()
                 );
             }
-            else
+            else if
+            (
+                !patchFaces 
+             && !patchEdges
+             && !doCell
+             && !doPoint
+             && !doFace
+             && !doCellSet
+             && !doFaceSet
+            )
             {
                 // points & edges
                 writePoints(mesh, runTime.timeName());
@@ -486,9 +533,7 @@ int main(int argc, char *argv[])
             Info << "No mesh." << endl;
         }
 
-        firstCheck = false;
+        Info << nl << endl;
-
-        Info << endl << endl;
     }
 
 

applications/utilities/mesh/generation/blockMesh/Make/files

@@ -6,11 +6,10 @@ $(curvedEdges)/polyLine.C
 $(curvedEdges)/polyLineEdge.C
 $(curvedEdges)/arcEdge.C
 $(curvedEdges)/ellipseEdge.C
-$(curvedEdges)/spline.C
 $(curvedEdges)/BSpline.C
-$(curvedEdges)/simpleSplineEdge.C
-$(curvedEdges)/polySplineEdge.C
 $(curvedEdges)/lineDivide.C
+$(curvedEdges)/CatmullRomSpline.C
+$(curvedEdges)/splineEdge.C
 
 blockMesh.C
 blockDescriptor.C
@@ -27,6 +26,6 @@ blockPoints.C
 blockCells.C
 blockBoundary.C
 
-genBlockMesh.C
+blockMeshApp.C
 
 EXE = $(FOAM_APPBIN)/blockMesh

applications/utilities/mesh/generation/blockMesh/addOptions.H

@@ -1,3 +0,0 @@
-    argList::noParallel();
-    argList::validOptions.insert("blockTopology", "");
-#   include "addRegionOption.H"

applications/utilities/mesh/generation/blockMesh/block.C

@@ -27,7 +27,6 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "block.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //

applications/utilities/mesh/generation/blockMesh/blockBoundary.C

@@ -28,18 +28,12 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "block.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-
+void Foam::block::blockBoundary()
-void block::blockBoundary()
 {
     label ni = blockDef_.n().x();
     label nj = blockDef_.n().y();
@@ -212,9 +206,4 @@ void block::blockBoundary()
     }
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/blockCells.C

@@ -28,18 +28,11 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "block.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-
+void Foam::block::blockCells()
-void block::blockCells()
 {
     label ni = blockDef_.n().x();
     label nj = blockDef_.n().y();
@@ -69,9 +62,4 @@ void block::blockCells()
     }
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/blockMesh.C

@@ -32,21 +32,16 @@ Description
 
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
 // Construct from IOdictionary
-blockMesh::blockMesh(IOdictionary& meshDescription)
+Foam::blockMesh::blockMesh(IOdictionary& meshDescription)
 :
     topologyPtr_(createTopology(meshDescription)),
-    scale_(readScalar(meshDescription.lookup("convertToMeters"))),
     blockOffsets_(createBlockOffsets()),
     mergeList_(createMergeList()),
-    points_(createPoints()),
+    points_(createPoints(meshDescription)),
     cells_(createCells()),
     patches_(createPatches())
 {}
@@ -54,7 +49,7 @@ blockMesh::blockMesh(IOdictionary& meshDescription)
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
 
-blockMesh::~blockMesh()
+Foam::blockMesh::~blockMesh()
 {
     delete topologyPtr_;
 }
@@ -62,7 +57,7 @@ blockMesh::~blockMesh()
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-const polyMesh& blockMesh::topology() const
+const Foam::polyMesh& Foam::blockMesh::topology() const
 {
     if (!topologyPtr_)
     {
@@ -75,13 +70,7 @@ const polyMesh& blockMesh::topology() const
 }
 
 
-const curvedEdgeList& blockMesh::edges() const
+Foam::wordList Foam::blockMesh::patchNames() const
-{
-    return edges_;
-}
-
-
-wordList blockMesh::patchNames() const
 {
     const polyPatchList& patchTopologies = topology().boundaryMesh();
     wordList names(patchTopologies.size());
@@ -95,7 +84,7 @@ wordList blockMesh::patchNames() const
 }
 
 
-wordList blockMesh::patchTypes() const
+Foam::wordList Foam::blockMesh::patchTypes() const
 {
     const polyPatchList& patchTopologies = topology().boundaryMesh();
     wordList types(patchTopologies.size());
@@ -109,7 +98,7 @@ wordList blockMesh::patchTypes() const
 }
 
 
-wordList blockMesh::patchPhysicalTypes() const
+Foam::wordList Foam::blockMesh::patchPhysicalTypes() const
 {
     const polyPatchList& patchTopologies = topology().boundaryMesh();
     wordList physicalTypes(patchTopologies.size());
@@ -123,13 +112,13 @@ wordList blockMesh::patchPhysicalTypes() const
 }
 
 
-label blockMesh::numZonedBlocks() const
+Foam::label Foam::blockMesh::numZonedBlocks() const
 {
     label num = 0;
 
     forAll(*this, blockI)
     {
-        if (operator[](blockI).blockDef().zoneName().size() > 0)
+        if (operator[](blockI).blockDef().zoneName().size())
         {
             num++;
         }
@@ -139,7 +128,7 @@ label blockMesh::numZonedBlocks() const
 }
 
 
-void blockMesh::writeTopology(Ostream& os) const
+void Foam::blockMesh::writeTopology(Ostream& os) const
 {
     const pointField& pts = topology().points();
 
@@ -160,9 +149,4 @@ void blockMesh::writeTopology(Ostream& os) const
     }
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/blockMesh.H

@@ -62,8 +62,6 @@ class blockMesh
 
         polyMesh* topologyPtr_;
 
-        scalar scale_;
-
         labelList blockOffsets_;
         labelList mergeList_;
 
@@ -94,7 +92,7 @@ class blockMesh
         labelList createBlockOffsets();
         labelList createMergeList();
 
-        pointField createPoints();
+        pointField createPoints(const dictionary&);
         cellShapeList createCells();
 
         faceList createPatchFaces(const polyPatch& patchTopologyFaces);
@@ -123,7 +121,10 @@ public:
 
             const polyMesh& topology() const;
 
-            const curvedEdgeList& edges() const;
+            const curvedEdgeList& edges() const
+            {
+                return edges_;
+            }
 
             const pointField& points() const
             {

applications/utilities/mesh/generation/blockMesh/blockMeshApp.C

@@ -22,9 +22,29 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
+Application
+    blockMesh
+
 Description
     A multi-block mesh generator.
 
+    Uses the block mesh description found in
+    @a constant/polyMesh/blockMeshDict
+    (or @a constant/\<region\>/polyMesh/blockMeshDict).
+
+Usage
+
+    - blockMesh [OPTION]
+
+    @param -blockTopology \n
+    Write the topology as a set of edges in OBJ format.
+
+    @param -region \<name\> \n
+    Specify an alternative mesh region.
+
+    @param -dict \<dictionary\> \n
+    Specify an alternative dictionary for the block mesh description.
+
 \*---------------------------------------------------------------------------*/
 
 #include "Time.H"
@@ -53,58 +73,88 @@ using namespace Foam;
 int main(int argc, char *argv[])
 {
     argList::noParallel();
-
+    argList::validOptions.insert("blockTopology", "");
-#   include "addOptions.H"
+    argList::validOptions.insert("dict", "dictionary");
+#   include "addRegionOption.H"
 #   include "setRootCase.H"
 #   include "createTime.H"
-#   include "checkOptions.H"
+
+    const word dictName("blockMeshDict");
 
     word regionName;
     fileName polyMeshDir;
 
-    if (args.options().found("region"))
+    if (args.optionFound("region"))
     {
-        regionName = args.options()["region"];
+        // constant/<region>/polyMesh/blockMeshDict
+        regionName  = args.option("region");
         polyMeshDir = regionName/polyMesh::meshSubDir;
 
         Info<< nl << "Generating mesh for region " << regionName << endl;
     }
     else
     {
-        regionName = polyMesh::defaultRegion;
+        // constant/polyMesh/blockMeshDict
+        regionName  = polyMesh::defaultRegion;
         polyMeshDir = polyMesh::meshSubDir;
     }
 
+    autoPtr<IOobject> meshDictIoPtr;
 
-    Info<< nl << "Reading block mesh description dictionary" << endl;
+    if (args.optionFound("dict"))
+    {
+        fileName dictPath(args.option("dict"));
 
-    IOobject meshDescriptionIOobject
+        meshDictIoPtr.set
-    (
+        (
-        "blockMeshDict",
+            new IOobject
-        runTime.constant(),
+            (
-        polyMeshDir,
+                (
-        runTime,
+                    isDir(dictPath)
-        IOobject::MUST_READ,
+                  ? dictPath/dictName
-        IOobject::NO_WRITE,
+                  : dictPath
-        false
+                ),
-    );
+                runTime,
+                IOobject::MUST_READ,
+                IOobject::NO_WRITE,
+                false
+            )
+        );
+    }
+    else
+    {
+        meshDictIoPtr.set
+        (
+            new IOobject
+            (
+                dictName,
+                runTime.constant(),
+                polyMeshDir,
+                runTime,
+                IOobject::MUST_READ,
+                IOobject::NO_WRITE,
+                false
+            )
+        );
+    }
 
-    if (!meshDescriptionIOobject.headerOk())
+    if (!meshDictIoPtr->headerOk())
     {
         FatalErrorIn(args.executable())
-            << "Cannot open mesh description file " << nl
+            << "Cannot open mesh description file\n    "
-            << runTime.constant()/polyMeshDir/"blockMeshDict" << nl
+            << meshDictIoPtr->objectPath()
+            << nl
             << exit(FatalError);
     }
 
-    IOdictionary meshDescription(meshDescriptionIOobject);
+    Info<< nl << "Creating block mesh from\n    "
+        << meshDictIoPtr->objectPath() << nl << endl;
 
-    Info<< nl << "Creating block mesh" << endl;
+    IOdictionary meshDict(meshDictIoPtr());
-
+    blockMesh blocks(meshDict);
-    blockMesh blocks(meshDescription);
 
 
-    if (writeTopo)
+    if (args.optionFound("blockTopology"))
     {
         // Write mesh as edges.
         {
@@ -159,7 +209,7 @@ int main(int argc, char *argv[])
     (
         runTime,
         runTime.constant(),
-        polyMeshDir,            //polyMesh::meshSubDir
+        polyMeshDir,
         patchNames,
         patchTypes,
         defaultFacesName,
@@ -187,13 +237,11 @@ int main(int argc, char *argv[])
 
 
     // Read in a list of dictionaries for the merge patch pairs
-    if (meshDescription.found("mergePatchPairs"))
+    if (meshDict.found("mergePatchPairs"))
     {
-        Info<< nl << "Creating merge patch pairs" << nl << endl;
-
         List<Pair<word> > mergePatchPairs
         (
-            meshDescription.lookup("mergePatchPairs")
+            meshDict.lookup("mergePatchPairs")
         );
 
         if (mergePatchPairs.size() > 0)
@@ -354,7 +402,7 @@ int main(int argc, char *argv[])
             const labelListList& blockCells = b.cells();
             const word& zoneName = b.blockDef().zoneName();
 
-            if (zoneName.size() > 0)
+            if (zoneName.size())
             {
                 HashTable<label>::const_iterator iter = zoneMap.find(zoneName);
 
@@ -421,8 +469,7 @@ int main(int argc, char *argv[])
     IOstream::defaultPrecision(10);
 
     Info << nl << "Writing polyMesh" << endl;
-    mesh.removeFiles(mesh.instance());
+    mesh.removeFiles();
-
     if (!mesh.write())
     {
         FatalErrorIn(args.executable())
@@ -430,7 +477,8 @@ int main(int argc, char *argv[])
             << exit(FatalError);
     }
 
-    Info<< nl << "end" << endl;
+    Info<< nl << "End" << endl;
+
     return 0;
 }
 

applications/utilities/mesh/generation/blockMesh/blockPoints.C

@@ -28,7 +28,6 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "block.H"
 
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //

applications/utilities/mesh/generation/blockMesh/checkBlockMesh.C

@@ -28,16 +28,10 @@ Description
 
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
 // Check the blockMesh topology
-
+void Foam::blockMesh::checkBlockMesh(const polyMesh& bm)
-void blockMesh::checkBlockMesh(const polyMesh& bm)
 {
     Info<< nl << "Check block mesh topology" << endl;
 
@@ -148,9 +142,4 @@ void blockMesh::checkBlockMesh(const polyMesh& bm)
     }
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/checkOptions.H

@@ -1 +0,0 @@
-    bool writeTopo = args.options().found("blockTopology");

applications/utilities/mesh/generation/blockMesh/createBlockOffsets.C

@@ -27,17 +27,11 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-labelList blockMesh::createBlockOffsets()
+Foam::labelList Foam::blockMesh::createBlockOffsets()
 {
     Info<< nl << "Creating block offsets" << endl;
 
@@ -63,10 +57,4 @@ labelList blockMesh::createBlockOffsets()
     return BlockOffsets;
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //
-

applications/utilities/mesh/generation/blockMesh/createCells.C

@@ -29,14 +29,9 @@ License
 #include "blockMesh.H"
 #include "cellModeller.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-cellShapeList blockMesh::createCells()
+Foam::cellShapeList Foam::blockMesh::createCells()
 {
     Info<< nl << "Creating cells" << endl;
 
@@ -76,10 +71,4 @@ cellShapeList blockMesh::createCells()
     return cells;
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //
-

applications/utilities/mesh/generation/blockMesh/createMergeList.C

@@ -26,14 +26,9 @@ License
 
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-labelList blockMesh::createMergeList()
+Foam::labelList Foam::blockMesh::createMergeList()
 {
     Info<< nl << "Creating merge list " << flush;
 
@@ -98,7 +93,7 @@ labelList blockMesh::createMergeList()
         // the size of the block.
 
         boundBox bb(blockCells[blockPlabel].points(blockFaces, blockPoints));
-        const scalar mergeSqrDist = SMALL*magSqr(bb.max() - bb.min());
+        const scalar mergeSqrDist = SMALL*magSqr(bb.span());
 
         // This is an N^2 algorithm
 
@@ -277,7 +272,7 @@ labelList blockMesh::createMergeList()
                 if (cp[blockPfaceFacePointLabel] == -1)
                 {
                     FatalErrorIn("blockMesh::createMergeList()")
-                        << "Inconsistent point locations between block pair " 
+                        << "Inconsistent point locations between block pair "
                         << blockPlabel << " and " << blockNlabel << nl
                         << "    probably due to inconsistent grading."
                         << exit(FatalError);
@@ -561,9 +556,4 @@ labelList blockMesh::createMergeList()
     return MergeList;
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/createPatches.C

@@ -29,14 +29,9 @@ Description
 
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-faceList blockMesh::createPatchFaces
+Foam::faceList Foam::blockMesh::createPatchFaces
 (
     const polyPatch& patchTopologyFaces
 )
@@ -157,7 +152,7 @@ faceList blockMesh::createPatchFaces
 }
 
 
-faceListList blockMesh::createPatches()
+Foam::faceListList Foam::blockMesh::createPatches()
 {
     Info<< "\nCreating patches\n";
 
@@ -173,9 +168,4 @@ faceListList blockMesh::createPatches()
     return patches;
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/createPoints.C

@@ -28,24 +28,26 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "blockMesh.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-pointField blockMesh::createPoints()
+Foam::pointField Foam::blockMesh::createPoints(const dictionary& dict)
 {
-    Info<< nl << "Creating points" << endl;
+    blockMesh& blocks = *this;
+
+    scalar scaleFactor = 1.0;
+
+    // optional 'convertToMeters' (or 'scale'?)
+    if (!dict.readIfPresent("convertToMeters", scaleFactor))
+    {
+        dict.readIfPresent("scale", scaleFactor);
+    }
+
+    Info<< nl << "Creating points with scale " << scaleFactor << endl;
 
     pointField points(nPoints_);
 
-    blockMesh& blocks = *this;
-
     forAll(blocks, blockLabel)
     {
         const pointField& blockPoints = blocks[blockLabel].points();
@@ -59,17 +61,11 @@ pointField blockMesh::createPoints()
                     blockPointLabel
                   + blockOffsets_[blockLabel]
                 ]
-            ] = scale_*blockPoints[blockPointLabel];
+            ] = scaleFactor * blockPoints[blockPointLabel];
         }
     }
 
     return points;
 }
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //
-

applications/utilities/mesh/generation/blockMesh/createTopology.C

@@ -40,9 +40,9 @@ bool Foam::blockMesh::blockLabelsOK
 {
     bool ok = true;
 
-    for (int i=0; i<blockShape.size(); i++)
+    forAll(blockShape, blockI)
     {
-        if (blockShape[i] < 0)
+        if (blockShape[blockI] < 0)
         {
             ok = false;
 
@@ -52,10 +52,10 @@ bool Foam::blockMesh::blockLabelsOK
                 "(const label blockLabel, const pointField& points, "
                 "const cellShape& blockShape)"
             )   << "block " << blockLabel
-                << " point label " << blockShape[i]
+                << " point label " << blockShape[blockI]
                 << " less than zero" << endl;
         }
-        else if (blockShape[i] >= points.size())
+        else if (blockShape[blockI] >= points.size())
         {
             ok = false;
 
@@ -65,7 +65,7 @@ bool Foam::blockMesh::blockLabelsOK
                 "(const label blockLabel, const pointField& points, "
                 "const cellShape& blockShape)"
             )   << "block " << blockLabel
-                << " point label " << blockShape[i]
+                << " point label " << blockShape[blockI]
                 << " larger than " << points.size() - 1
                 << " the largest defined point label" << endl;
         }
@@ -84,38 +84,34 @@ bool Foam::blockMesh::patchLabelsOK
 {
     bool ok = true;
 
-    for (label facei=0; facei<patchFaces.size(); facei++)
+    forAll(patchFaces, faceI)
     {
-        const labelList& labels = patchFaces[facei];
+        const labelList& f = patchFaces[faceI];
 
-        for (int i=0; i<labels.size(); i++)
+        forAll(f, fp)
         {
-            if (labels[i] < 0)
+            if (f[fp] < 0)
             {
                 ok = false;
 
                 WarningIn
                 (
-                    "bool Foam::blockMesh::patchLabelsOK"
+                    "bool Foam::blockMesh::patchLabelsOK(...)"
-                    "(const label patchLabel, const pointField& points, "
-                    "const faceList& patchFaces)"
                 )   << "patch " << patchLabel
-                    << " face " << facei
+                    << " face " << faceI
-                    << " point label " << labels[i]
+                    << " point label " << f[fp]
                     << " less than zero" << endl;
             }
-            else if (labels[i] >= points.size())
+            else if (f[fp] >= points.size())
             {
                 ok = false;
 
                 WarningIn
                 (
-                    "bool Foam::blockMesh::patchLabelsOK"
+                    "bool Foam::blockMesh::patchLabelsOK(...)"
-                    "(const label patchLabel, const pointField& points, "
-                    "const faceList& patchFaces)"
                 )   << "patch " << patchLabel
-                    << " face " << facei
+                    << " face " << faceI
-                    << " point label " << labels[i]
+                    << " point label " << f[fp]
                     << " larger than " << points.size() - 1
                     << " the largest defined point label" << endl;
             }
@@ -137,23 +133,13 @@ Foam::polyMesh* Foam::blockMesh::createTopology(IOdictionary& meshDescription)
     word defaultPatchName = "defaultFaces";
     word defaultPatchType = emptyPolyPatch::typeName;
 
-    // get names and types for the unassigned patch faces
+    // get names/types for the unassigned patch faces
-    if (meshDescription.found("defaultPatch"))
+    // this is a bit heavy handed (and ugly), but there is currently
+    // no easy way to rename polyMesh patches subsequently
+    if (const dictionary* dictPtr = meshDescription.subDictPtr("defaultPatch"))
     {
-        const dictionary& defaultPatch =
+        dictPtr->readIfPresent("name", defaultPatchName);
-            meshDescription.subDict("defaultPatch");
+        dictPtr->readIfPresent("type", defaultPatchType);
-
-        // this is a bit heavy handed (and ugly), but there is currently
-        // no easy way to rename polyMesh patches subsequently
-        if (defaultPatch.found("name"))
-        {
-            defaultPatch.lookup("name") >> defaultPatchName;
-        }
-
-        if (defaultPatch.found("type"))
-        {
-            defaultPatch.lookup("type") >> defaultPatchType;
-        }
     }
 
     Info<< nl << "Creating blockCorners" << endl;
@@ -456,4 +442,3 @@ Foam::polyMesh* Foam::blockMesh::createTopology(IOdictionary& meshDescription)
 
 
 // ************************************************************************* //
-

applications/utilities/mesh/generation/blockMesh/curvedEdges/BSpline.C

@@ -22,137 +22,120 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    BSpline : cubic spline going through all the knots
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "BSpline.H"
-#include "simpleMatrix.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-pointField BSpline::findKnots
-(
-    const pointField& allknots,
-    const vector& fstend,
-    const vector& sndend
-)
-{
-    label newnKnots(allknots.size() + 2);
-    label NKnots(allknots.size());
-    pointField newknots(newnKnots);
-
-    // set up 1/6 and 2/3 which are the matrix elements throughout most
-    // of the matrix
-
-    register scalar oneSixth = 1.0/6.0;
-    register scalar twoThird = 2.0/3.0;
-
-    simpleMatrix<vector> M(newnKnots);
-
-    // set up the matrix
-
-    M[0][0] = -0.5*scalar(NKnots - 1);
-    M[0][2] =  0.5*scalar(NKnots - 1);
-
-    for (register label i=1; i<newnKnots-1; i++)
-    {
-        M[i][i-1] = oneSixth;
-        M[i][i] = twoThird;
-        M[i][i+1] = oneSixth;
-    }
-
-    M[newnKnots - 1][newnKnots - 3] = -0.5*scalar(NKnots - 1);
-    M[newnKnots - 1][newnKnots - 1] =  0.5*scalar(NKnots - 1);
-
-    // set up the vector
-
-    for (label i=1; i<=NKnots; i++)
-    {
-        M.source()[i] = allknots[i-1];
-    }
-
-    // set the gradients at the two ends
-
-    if (mag(fstend)<1e-8)
-    {
-        // set to the default : forward differences on the end knots
-        M.source()[0] = allknots[1] - allknots[0];
-        M.source()[0] /= mag(M.source()[0]);
-
-        M.source()[NKnots+1] = M.source()[NKnots-1] - M.source()[NKnots];
-        M.source()[NKnots+1] /= mag(M.source()[NKnots+1]);
-    }
-    else
-    {
-        // set to the gradient vectors provided
-        M.source()[0] = fstend/mag(fstend);
-        M.source()[NKnots+1] = sndend/mag(sndend);
-    }
-
-    // invert the equation to find the control knots
-
-    newknots = M.solve();
-
-    return newknots;
-}
-
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::BSpline::BSpline
-BSpline::BSpline(const pointField& Knots)
-:
-    spline(findKnots(Knots))
-{}
-
-
-// Construct from components
-BSpline::BSpline
 (
-    const pointField& Knots,
+    const pointField& knots,
-    const vector& fstend,
+    const bool closed
-    const vector& sndend
 )
 :
-    spline(findKnots(Knots, fstend, sndend))
+    polyLine(knots, closed)
 {}
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-//- Return the real position of a point on the curve given by
+Foam::point Foam::BSpline::position(const scalar mu) const
-//  the parameter 0 <= lambda <= 1
-vector BSpline::realPosition(scalar mu)
 {
-    return spline::position(mu);
+    // endpoints
+    if (mu < SMALL)
+    {
+        return points_[0];
+    }
+    else if (mu > 1 - SMALL)
+    {
+        return points_[points_.size()-1];
+    }
+
+    scalar lambda = mu;
+    label segment = localParameter(lambda);
+    return position(segment, lambda);
 }
 
 
-//- Return the position of a point on the curve given by
+Foam::point Foam::BSpline::position
-//  the parameter 0 <= lambda <= 1
+(
-vector BSpline::position(const scalar mu) const
+    const label segment,
+    const scalar mu
+) const
 {
-    return spline::position((1.0/(nKnots() - 1))*(1.0 + mu*(nKnots() - 3)));
+    // out-of-bounds
+    if (segment < 0)
+    {
+        return points_[0];
+    }
+    else if (segment > nSegments())
+    {
+        return points_[points_.size()-1];
+    }
+
+    const point& p0 = points()[segment];
+    const point& p1 = points()[segment+1];
+
+    // special cases - no calculation needed
+    if (mu <= 0.0)
+    {
+        return p0;
+    }
+    else if (mu >= 1.0)
+    {
+        return p1;
+    }
+
+
+    // determine the end points
+    point e0;
+    point e1;
+
+    if (segment == 0)
+    {
+        // end: simple reflection
+        e0 = 2*p0 - p1;
+    }
+    else
+    {
+        e0 = points()[segment-1];
+    }
+
+    if (segment+1 == nSegments())
+    {
+        // end: simple reflection
+        e1 = 2*p1 - p0;
+    }
+    else
+    {
+        e1 = points()[segment+2];
+    }
+
+
+    return 1.0/6.0 *
+    (
+        ( e0 + 4*p0 + p1 )
+      + mu *
+        (
+            ( -3*e0 + 3*p1 )
+          + mu *
+            (
+                ( 3*e0 - 6*p0 + 3*p1 )
+              + mu *
+                ( -e0 + 3*p0 - 3*p1 + e1 )
+            )
+        )
+    );
 }
 
 
-//- Return the length of the curve
+Foam::scalar Foam::BSpline::length() const
-scalar BSpline::length() const
 {
     notImplemented("BSpline::length() const");
     return 1.0;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/BSpline.H

@@ -26,7 +26,33 @@ Class
     Foam::BSpline
 
 Description
-    BSpline : cubic spline going through all the knots
+    An implementation of B-splines.
+
+    In this implementation, the end tangents are created automatically
+    by reflection.
+
+    In matrix form, the @e local interpolation on the interval t=[0..1] is
+    described as follows:
+    @verbatim
+    P(t) = 1/6 * [ t^3 t^2 t 1 ] * [ -1  3 -3  1 ] * [ P-1 ]
+                                   [  3 -6  3  0 ]   [ P0 ]
+                                   [ -3  0  3  0 ]   [ P1 ]
+                                   [  1  4  1  0 ]   [ P2 ]
+    @endverbatim
+
+    Where P-1 and P2 represent the neighbouring points or the extrapolated
+    end points. Simple reflection is used to automatically create the end
+    points.
+
+    The spline is discretized based on the chord length of the individual
+    segments. In rare cases (sections with very high curvatures), the
+    resulting distribution may be sub-optimal.
+
+SeeAlso
+    CatmullRomSpline
+
+ToDo
+    A future implementation could also handle closed splines.
 
 SourceFiles
     BSpline.C
@@ -36,7 +62,7 @@ SourceFiles
 #ifndef BSpline_H
 #define BSpline_H
 
-#include "spline.H"
+#include "polyLine.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -49,45 +75,38 @@ namespace Foam
 
 class BSpline
 :
-    public spline
+    public polyLine
 {
-    // Private member functions
+    // Private Member Functions
 
-        scalar remap(const scalar&);
+        //- Disallow default bitwise copy construct
+        BSpline(const BSpline&);
 
-        pointField findKnots
+        //- Disallow default bitwise assignment
-        (
+        void operator=(const BSpline&);
-            const pointField&,
-            const vector& fstend = vector::zero,
-            const vector& sndend = vector::zero
-        );
 
 
 public:
 
     // Constructors
 
-        //- Construct from components
-        BSpline(const pointField& knots);
-
         //- Construct from components
         BSpline
         (
             const pointField& knots,
-            const vector& fstend,
+            const bool notImplementedClosed = false
-            const vector& sndend
         );
 
 
     // Member Functions
 
-        //- Return the real position of a point on the curve given by
+        //- Return the point position corresponding to the curve parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1
-        vector realPosition(scalar lambda);
+        point position(const scalar lambda) const;
 
-        //- Return the position of a point on the curve given by
+        //- Return the point position corresponding to the local parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1 on the given segment
-        vector position(const scalar lambda) const;
+        point position(const label segment, const scalar lambda) const;
 
         //- Return the length of the curve
         scalar length() const;

applications/utilities/mesh/generation/blockMesh/curvedEdges/CatmullRomSpline.C

@@ -0,0 +1,141 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "error.H"
+#include "CatmullRomSpline.H"
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+Foam::CatmullRomSpline::CatmullRomSpline
+(
+    const pointField& knots,
+    const bool closed
+)
+:
+    polyLine(knots, closed)
+{}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+Foam::point Foam::CatmullRomSpline::position(const scalar mu) const
+{
+    // endpoints
+    if (mu < SMALL)
+    {
+        return points()[0];
+    }
+    else if (mu > 1 - SMALL)
+    {
+        return points()[points().size()-1];
+    }
+
+    scalar lambda = mu;
+    label segment = localParameter(lambda);
+    return position(segment, lambda);
+}
+
+
+Foam::point Foam::CatmullRomSpline::position
+(
+    const label segment,
+    const scalar mu
+) const
+{
+    // out-of-bounds
+    if (segment < 0)
+    {
+        return points()[0];
+    }
+    else if (segment > nSegments())
+    {
+        return points()[points().size()-1];
+    }
+
+    const point& p0 = points()[segment];
+    const point& p1 = points()[segment+1];
+
+    // special cases - no calculation needed
+    if (mu <= 0.0)
+    {
+        return p0;
+    }
+    else if (mu >= 1.0)
+    {
+        return p1;
+    }
+
+
+    // determine the end points
+    point e0;
+    point e1;
+
+    if (segment == 0)
+    {
+        // end: simple reflection
+        e0 = 2*p0 - p1;
+    }
+    else
+    {
+        e0 = points()[segment-1];
+    }
+
+    if (segment+1 == nSegments())
+    {
+        // end: simple reflection
+        e1 = 2*p1 - p0;
+    }
+    else
+    {
+        e1 = points()[segment+2];
+    }
+
+
+    return 0.5 *
+    (
+        ( 2*p0 )
+      + mu *
+        (
+            ( -e0 + p1 )
+          + mu *
+            (
+                ( 2*e0 - 5*p0 + 4*p1 - e1 )
+              + mu *
+                ( -e0 + 3*p0 - 3*p1 + e1 )
+            )
+        )
+    );
+}
+
+
+Foam::scalar Foam::CatmullRomSpline::length() const
+{
+    notImplemented("CatmullRomSpline::length() const");
+    return 1.0;
+}
+
+
+// ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/CatmullRomSpline.H

@@ -0,0 +1,126 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    Foam::CatmullRomSpline
+
+Description
+    An implementation of Catmull-Rom splines
+    (sometimes known as Overhauser splines).
+
+    In this implementation, the end tangents are created automatically
+    by reflection.
+
+    In matrix form, the @e local interpolation on the interval t=[0..1] is
+    described as follows:
+    @verbatim
+    P(t) = 1/2 * [ t^3 t^2 t 1 ] * [ -1  3 -3  1 ] * [ P-1 ]
+                                   [  2 -5  4 -1 ]   [ P0 ]
+                                   [ -1  0  1  0 ]   [ P1 ]
+                                   [  0  2  0  0 ]   [ P2 ]
+    @endverbatim
+
+    Where P-1 and P2 represent the neighbouring points or the extrapolated
+    end points. Simple reflection is used to automatically create the end
+    points.
+
+    The spline is discretized based on the chord length of the individual
+    segments. In rare cases (sections with very high curvatures), the
+    resulting distribution may be sub-optimal.
+
+SeeAlso
+    http://www.algorithmist.net/catmullrom.html provides a nice
+    introduction
+
+ToDo
+    A future implementation could also handle closed splines.
+
+SourceFiles
+    CatmullRomSpline.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef CatmullRomSpline_H
+#define CatmullRomSpline_H
+
+#include "polyLine.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                      Class CatmullRomSpline Declaration
+\*---------------------------------------------------------------------------*/
+
+class CatmullRomSpline
+:
+    public polyLine
+{
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        CatmullRomSpline(const CatmullRomSpline&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const CatmullRomSpline&);
+
+
+public:
+
+    // Constructors
+
+        //- Construct from components
+        CatmullRomSpline
+        (
+            const pointField& knots,
+            const bool notImplementedClosed = false
+        );
+
+
+    // Member Functions
+
+        //- Return the point position corresponding to the curve parameter
+        //  0 <= lambda <= 1
+        point position(const scalar lambda) const;
+
+        //- Return the point position corresponding to the local parameter
+        //  0 <= lambda <= 1 on the given segment
+        point position(const label segment, const scalar lambda) const;
+
+        //- Return the length of the curve - not implemented
+        scalar length() const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/arcEdge.C

@@ -22,26 +22,18 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    arcEdge class : defines the arcEdge of a circle in terms of 3 points on its
-    circumference
-
 \*---------------------------------------------------------------------------*/
 
 #include "arcEdge.H"
 #include "mathematicalConstants.H"
-
+#include "addToRunTimeSelectionTable.H"
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
 namespace Foam
 {
     defineTypeNameAndDebug(arcEdge, 0);
-
+    addToRunTimeSelectionTable(curvedEdge, arcEdge, Istream);
-    // Add the curvedEdge constructor functions to the hash tables
-    curvedEdge::addIstreamConstructorToTable<arcEdge>
-        addArcEdgeIstreamConstructorToTable_;
 }
 
 
@@ -69,7 +61,7 @@ Foam::cylindricalCS Foam::arcEdge::calcAngle()
 
     scalar fact = 0.5*(bsqr - adotb)/denom;
 
-    vector centre = 0.5*a + fact*((a ^ b) ^ a);
+    point centre = 0.5*a + fact*((a ^ b) ^ a);
 
     centre += p1_;
 
@@ -79,19 +71,25 @@ Foam::cylindricalCS Foam::arcEdge::calcAngle()
     vector r3(p3_ - centre);
 
     // find angles
-    scalar tmp = (r3&r1)/(mag(r3)*mag(r1));
+    angle_ = (acos((r3 & r1)/(mag(r3) * mag(r1))))
-    angle_ = acos(tmp)*180.0/mathematicalConstant::pi;
+        * 180.0/mathematicalConstant::pi;
 
     // check if the vectors define an exterior or an interior arcEdge
-    if (((r1  ^ r2)&(r1 ^ r3)) < 0.0) angle_ = 360 - angle_;
+    if (((r1 ^ r2) & (r1 ^ r3)) < 0.0)
+    {
+        angle_ = 360.0 - angle_;
+    }
 
-    vector tempAxis(0.0,0.0,0.0);
+    vector tempAxis;
 
     if (angle_ <= 180.0)
     {
         tempAxis = r1 ^ r3;
 
-        if (mag(tempAxis)/(mag(r1)*mag(r3)) < 0.001) tempAxis = r1 ^ r2;
+        if (mag(tempAxis)/(mag(r1)*mag(r3)) < 0.001)
+        {
+            tempAxis = r1 ^ r2;
+        }
     }
     else
     {
@@ -101,30 +99,28 @@ Foam::cylindricalCS Foam::arcEdge::calcAngle()
     radius_ = mag(r3);
 
     // set up and return the local coordinate system
-    return cylindricalCS("tmpCS", centre, tempAxis, r1);
+    return cylindricalCS("arcEdgeCS", centre, tempAxis, r1);
 }
 
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
 Foam::arcEdge::arcEdge
 (
     const pointField& points,
     const label start,
     const label end,
-    const vector& P2
+    const point& pMid
 )
 :
     curvedEdge(points, start, end),
     p1_(points_[start_]),
-    p2_(P2),
+    p2_(pMid),
     p3_(points_[end_]),
     cs_(calcAngle())
 {}
 
 
-// Construct from Istream
 Foam::arcEdge::arcEdge(const pointField& points, Istream& is)
 :
     curvedEdge(points, is),
@@ -137,7 +133,7 @@ Foam::arcEdge::arcEdge(const pointField& points, Istream& is)
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-Foam::vector Foam::arcEdge::position(const scalar lambda) const
+Foam::point Foam::arcEdge::position(const scalar lambda) const
 {
     if (lambda < 0 || lambda > 1)
     {
@@ -150,7 +146,7 @@ Foam::vector Foam::arcEdge::position(const scalar lambda) const
     {
         return p1_;
     }
-    else if (lambda > 1-SMALL)
+    else if (lambda > 1 - SMALL)
     {
         return p3_;
     }
@@ -161,13 +157,10 @@ Foam::vector Foam::arcEdge::position(const scalar lambda) const
 }
 
 
-//- Return the length of the curve
 Foam::scalar Foam::arcEdge::length() const
 {
-    return angle_*radius_*mathematicalConstant::pi/180.0;
+    return (angle_ * radius_) * mathematicalConstant::pi/180.0;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/arcEdge.H

@@ -26,8 +26,7 @@ Class
     Foam::arcEdge
 
 Description
-    arcEdge class : defines the arcEdge of a circle in terms of 3 points on its
+    Defines the arcEdge of a circle in terms of 3 points on its circumference
-    circumference
 
 SourceFiles
     arcEdge.C
@@ -55,13 +54,22 @@ class arcEdge
 {
     // Private data
 
-        vector p1_, p2_, p3_;
+        point p1_, p2_, p3_;
+        cylindricalCS cs_;
         scalar angle_;
         scalar radius_;
-        cylindricalCS cs_;
 
+    // Private Member Functions
+
+        //- Calculate the coordinate system, angle and radius
         cylindricalCS calcAngle();
 
+        //- Disallow default bitwise copy construct
+        arcEdge(const arcEdge&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const arcEdge&);
+
 public:
 
     //- Runtime type information
@@ -75,7 +83,7 @@ public:
         (
             const pointField& points,
             const label start, const label end,
-            const vector&
+            const point& pMid
         );
 
         //- Construct from Istream setting pointsList
@@ -89,9 +97,9 @@ public:
 
     // Member Functions
 
-        //- Return the position of a point on the curve given by
+        //- Return the point position corresponding to the curve parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1
-        vector position(const scalar) const;
+        point position(const scalar) const;
 
         //- Return the length of the curve
         scalar length() const;

applications/utilities/mesh/generation/blockMesh/curvedEdges/curvedEdge.C

@@ -22,51 +22,24 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    library functions that will define a curvedEdge in space
-    parameterised for 0<lambda<1 from the beginning
-    point to the end point.
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "curvedEdge.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
 namespace Foam
 {
 
-// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
+    defineTypeNameAndDebug(curvedEdge, 0);
-
+    defineRunTimeSelectionTable(curvedEdge, Istream);
-defineTypeNameAndDebug(curvedEdge, 0);
-
-// Define the constructor function hash tables
-HashTable<curvedEdge::IstreamConstructorPtr_>*
-    curvedEdge::IstreamConstructorTablePtr_;
-
-
-// Hash table Constructor called from the table add functions.
-
-void curvedEdge::constructTables()
-{
-    static bool constructed = false;
-
-    if (!constructed)
-    {
-        curvedEdge::IstreamConstructorTablePtr_
-            = new HashTable<curvedEdge::IstreamConstructorPtr_>;
-
-        constructed = true;
-    }
 }
 
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::curvedEdge::curvedEdge
-curvedEdge::curvedEdge
 (
     const pointField& points,
     const label start,
@@ -79,8 +52,7 @@ curvedEdge::curvedEdge
 {}
 
 
-// Construct from Istream
+Foam::curvedEdge::curvedEdge(const pointField& points, Istream& is)
-curvedEdge::curvedEdge(const pointField& points, Istream& is)
 :
     points_(points),
     start_(readLabel(is)),
@@ -88,8 +60,7 @@ curvedEdge::curvedEdge(const pointField& points, Istream& is)
 {}
 
 
-// Copy construct
+Foam::curvedEdge::curvedEdge(const curvedEdge& c)
-curvedEdge::curvedEdge(const curvedEdge& c)
 :
     points_(c.points_),
     start_(c.start_),
@@ -97,16 +68,18 @@ curvedEdge::curvedEdge(const curvedEdge& c)
 {}
 
 
-//- Clone function
+Foam::autoPtr<Foam::curvedEdge> Foam::curvedEdge::clone() const
-autoPtr<curvedEdge> curvedEdge::clone() const
 {
     notImplemented("curvedEdge::clone() const");
     return autoPtr<curvedEdge>(NULL);
 }
 
 
-//- New function which constructs and returns pointer to a curvedEdge
+Foam::autoPtr<Foam::curvedEdge> Foam::curvedEdge::New
-autoPtr<curvedEdge> curvedEdge::New(const pointField& points, Istream& is)
+(
+    const pointField& points,
+    Istream& is
+)
 {
     if (debug)
     {
@@ -115,61 +88,59 @@ autoPtr<curvedEdge> curvedEdge::New(const pointField& points, Istream& is)
             << endl;
     }
 
-    word curvedEdgeType(is);
+    word edgeType(is);
 
-    HashTable<IstreamConstructorPtr_>::iterator curvedEdgeConstructorIter =
+    IstreamConstructorTable::iterator cstrIter =
-        IstreamConstructorTablePtr_->find(curvedEdgeType);
+        IstreamConstructorTablePtr_->find(edgeType);
 
-    if (curvedEdgeConstructorIter == IstreamConstructorTablePtr_->end())
+    if (cstrIter == IstreamConstructorTablePtr_->end())
     {
         FatalErrorIn("curvedEdge::New(const pointField&, Istream&)")
-            << "Unknown curvedEdge type " << curvedEdgeType << endl << endl
+            << "Unknown curvedEdge type " << edgeType << endl << endl
             << "Valid curvedEdge types are" << endl
             << IstreamConstructorTablePtr_->toc()
             << abort(FatalError);
     }
 
-    return autoPtr<curvedEdge>(curvedEdgeConstructorIter()(points, is));
+    return autoPtr<curvedEdge>(cstrIter()(points, is));
 }
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-//- Return the complete knotList by adding the start and end points to the
+Foam::pointField Foam::curvedEdge::appendEndPoints
-//  given list
-pointField knotlist
 (
     const pointField& points,
     const label start,
     const label end,
-    const pointField& otherknots
+    const pointField& otherKnots
 )
 {
-    label listsize(otherknots.size() + 2);
+    pointField allKnots(otherKnots.size() + 2);
-    pointField tmp(listsize);
 
-    tmp[0] = points[start];
+    // start/end knots
+    allKnots[0] = points[start];
+    allKnots[otherKnots.size() + 1] = points[end];
 
-    for (register label i=1; i<listsize-1; i++)
+    // intermediate knots
+    forAll(otherKnots, knotI)
     {
-        tmp[i] = otherknots[i-1];
+        allKnots[knotI+1] = otherKnots[knotI];
     }
 
-    tmp[listsize-1] = points[end];
+    return allKnots;
-
-    return tmp;
 }
 
 
 // * * * * * * * * * * * * * * * Member Operators  * * * * * * * * * * * * * //
 
-void curvedEdge::operator=(const curvedEdge&)
+void Foam::curvedEdge::operator=(const curvedEdge&)
 {
     notImplemented("void curvedEdge::operator=(const curvedEdge&)");
 }
 
 
-Ostream& operator<<(Ostream& os, const curvedEdge& p)
+Foam::Ostream& Foam::operator<<(Ostream& os, const curvedEdge& p)
 {
     os << p.start_ << tab << p.end_ << endl;
 
@@ -177,9 +148,4 @@ Ostream& operator<<(Ostream& os, const curvedEdge& p)
 }
 
 
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/curvedEdge.H

@@ -26,9 +26,8 @@ Class
     Foam::curvedEdge
 
 Description
-    curvedEdges : library functions that will define a curvedEdge in space
+    Define a curved edge that is parameterized for 0<lambda<1
-    parameterised for 0<lambda<1 from the beginning point to the end point.
+    between the start and end point.
-    This file contains the abstract base class curvedEdge.
 
 SourceFiles
     curvedEdge.C
@@ -38,6 +37,7 @@ SourceFiles
 #ifndef curvedEdges_H
 #define curvedEdges_H
 
+#include "edge.H"
 #include "pointField.H"
 #include "typeInfo.H"
 #include "HashTable.H"
@@ -49,7 +49,7 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class curvedEdge Declaration
+                         Class curvedEdge Declaration
 \*---------------------------------------------------------------------------*/
 
 class curvedEdge
@@ -59,55 +59,40 @@ protected:
     // Protected data
 
         const pointField& points_;
-        const label start_, end_;
+        const label start_;
+        const label end_;
+
+    // Protected Member Functions
+
+        //- Return a complete point field by appending the start/end points
+        //  to the given list
+        static pointField appendEndPoints
+        (
+            const pointField&,
+            const label start,
+            const label end,
+            const pointField& otherKnots
+        );
+
 
 public:
 
-    // Constructor Hash tables
+    //- Runtime type information
+    TypeName("curvedEdge");
 
-        //- Construct from Istream function pointer type
+    // Declare run-time constructor selection tables
-        typedef autoPtr<curvedEdge> (*IstreamConstructorPtr_)
-            (const pointField&, Istream&);
 
-        //- Construct from Istream function pointer table pointer
+        declareRunTimeSelectionTable
-        static HashTable<IstreamConstructorPtr_>*
+        (
-            IstreamConstructorTablePtr_;
+            autoPtr,
-
+            curvedEdge,
-
+            Istream,
-    // Hash table constructor classes and functions
-
-        //- Hash table Constructor.
-        //  Must be called from the table add functions below.
-        static void constructTables();
-
-
-        //- Class to add constructor from Istream to Hash table
-        template<class curvedEdgeType>
-        class addIstreamConstructorToTable
-        {
-        public:
-
-            static autoPtr<curvedEdge> New
             (
                 const pointField& points,
                 Istream& is
-            )
+            ),
-            {
+            (points, is)
-                return autoPtr<curvedEdge>(new curvedEdgeType(points, is));
+        );
-            }
-
-            addIstreamConstructorToTable()
-            {
-                curvedEdge::constructTables();
-
-                curvedEdge::IstreamConstructorTablePtr_
-                    ->insert(curvedEdgeType::typeName, New);
-            }
-        };
-
-
-    //- Runtime type information
-    TypeName("curvedEdge");
 
 
     // Constructors
@@ -141,34 +126,37 @@ public:
     // Member Functions
 
         //- Return label of start point
-        label start() const
+        inline label start() const;
-        {
-            return start_;
-        }
 
         //- Return label of end point
-        label end() const
+        inline label end() const;
-        {
-            return end_;
-        }
 
-        //- Compare the given start and end points with those of this curve
+        //- Compare the given start and end points with this curve
-        bool compare(const label start, const label end) const
+        //  -  0: different
-        {
+        //  - +1: identical
-            return
+        //  - -1: same edge, but different orientation
-            (
+        inline int compare(const curvedEdge&) const;
-                (start_ == start && end_ == end)
-             || (start_ == end && end_ == start)
-            );
-        }
 
-        //- Return the position of a point on the curve given by
+        //- Compare the given start and end points with this curve
-        //  the parameter 0 <= lambda <= 1
+        //  -  0: different
-        virtual vector position(const scalar) const = 0;
+        //  - +1: identical
+        //  - -1: same edge, but different orientation
+        inline int compare(const edge&) const;
+
+        //- Compare the given start and end points with this curve
+        //  -  0: different
+        //  - +1: identical
+        //  - -1: same edge, but different orientation
+        inline int compare(const label start, const label end) const;
+
+        //- Return the point position corresponding to the curve parameter
+        //  0 <= lambda <= 1
+        virtual point position(const scalar) const = 0;
 
         //- Return the length of the curve
         virtual scalar length() const = 0;
 
+
     // Member operators
 
         void operator=(const curvedEdge&);
@@ -179,23 +167,16 @@ public:
 };
 
 
-//- Return the complete knotList by adding the start and end points to the
-//  given list
-pointField knotlist
-(
-    const pointField& points,
-    const label start,
-    const label end,
-    const pointField& otherknots
-);
-
-
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 } // End namespace Foam
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
+#include "curvedEdgeI.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
 #endif
 
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/curvedEdgeI.H

@@ -24,75 +24,47 @@ License
 
 \*---------------------------------------------------------------------------*/
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-inline const List<word>& molConfig::molIdList() const
+inline Foam::label Foam::curvedEdge::start() const
 {
-    return idList_;
+    return start_;
 }
 
 
-inline const labelField& molConfig::id() const
+inline Foam::label Foam::curvedEdge::end() const
 {
-    return id_;
+    return end_;
 }
 
 
-inline const scalarField& molConfig::mass() const
+inline int Foam::curvedEdge::compare(const label start, const label end) const
 {
-    return mass_;
+    if (start_ == start && end_ == end)
+    {
+        return 1;
+    }
+    else if (start_ == end && end_ == start)
+    {
+        return -1;
+    }
+    else
+    {
+        return 0;
+    }
 }
 
 
-inline const vectorField& molConfig::positions() const
+inline int Foam::curvedEdge::compare(const curvedEdge& e) const
 {
-    return positions_;
+    return Foam::curvedEdge::compare(e.start(), e.end());
 }
 
 
-inline const labelField& molConfig::cells() const
+inline int Foam::curvedEdge::compare(const edge& e) const
 {
-    return cells_;
+    return Foam::curvedEdge::compare(e.start(), e.end());
 }
 
 
-inline const vectorField& molConfig::U() const
-{
-    return U_;
-}
-
-
-inline const vectorField& molConfig::A() const
-{
-    return A_;
-}
-
-
-inline const labelField& molConfig::tethered() const
-{
-    return tethered_;
-}
-
-
-inline const vectorField& molConfig::tetherPositions() const
-{
-    return tetherPositions_;
-}
-
-
-inline label molConfig::nMol() const
-{
-    return nMol_;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/curvedEdgeList.H

@@ -22,10 +22,11 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-InClass
+Typedef
     Foam::curvedEdgeList
 
 Description
+    A PtrList of curvedEdges
 
 \*---------------------------------------------------------------------------*/
 

applications/utilities/mesh/generation/blockMesh/curvedEdges/lineDivide.C

@@ -22,9 +22,6 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    lineDivide class : divides a line into segments
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
@@ -32,66 +29,58 @@ Description
 #include "lineDivide.H"
 #include "curvedEdge.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::lineDivide::lineDivide
-lineDivide::lineDivide(const curvedEdge& bc, const label n, const scalar xratio)
+(
+    const curvedEdge& cedge,
+    const label ndiv,
+    const scalar xratio
+)
 :
-    points_(n + 1),
+    points_(ndiv + 1),
-    divisions_(n + 1),
+    divisions_(ndiv + 1)
-    noPoints_(n)
 {
-    scalar np(n);
+    divisions_[0]    = 0.0;
-    scalar lambda(0.0);
+    divisions_[ndiv] = 1.0;
 
+    // calculate the spacing
     if (xratio == 1.0)
     {
-        scalar y(1.0/np);
+        for (label i=1; i < ndiv; i++)
-        for (label i=0; i<=noPoints_; i++)
         {
-            lambda = scalar(i)/np;
+            divisions_[i] = scalar(i)/ndiv;
-            points_[i] = bc.position(lambda);
-            divisions_[i] = y*i;
         }
     }
     else
     {
-        points_[0] = bc.position(0.0);
+        for (label i=1; i < ndiv; i++)
-        divisions_[0] = 0.0;
-        scalar xrpower = 1.0;
-
-        for (label i=1; i<=noPoints_; i++)
         {
-            lambda = (1.0 - pow(xratio, i))/(1.0 - pow(xratio, np));
+            divisions_[i] = (1.0 - pow(xratio, i))/(1.0 - pow(xratio, ndiv));
-            points_[i] = bc.position(lambda);
-            divisions_[i] = lambda;
-            xrpower *= xratio;
         }
     }
+
+    // calculate the points
+    for (label i=0; i <= ndiv; i++)
+    {
+        points_[i] = cedge.position(divisions_[i]);
+    }
 }
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-const pointField& lineDivide::points() const
+const Foam::pointField& Foam::lineDivide::points() const
 {
     return points_;
 }
 
 
-const scalarList& lineDivide::lambdaDivisions() const
+const Foam::scalarList& Foam::lineDivide::lambdaDivisions() const
 {
     return divisions_;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/lineDivide.H

@@ -26,7 +26,7 @@ Class
     Foam::lineDivide
 
 Description
-    lineDivide class : divides a line into segments
+    Divides a line into segments
 
 SourceFiles
     lineDivide.C
@@ -47,7 +47,7 @@ namespace Foam
 class curvedEdge;
 
 /*---------------------------------------------------------------------------*\
-                           Class lineDivide Declaration
+                         Class lineDivide Declaration
 \*---------------------------------------------------------------------------*/
 
 class lineDivide
@@ -55,16 +55,20 @@ class lineDivide
     // Private data
 
         pointField points_;
-        scalarList divisions_;
-        label noPoints_;
 
+        scalarList divisions_;
 
 public:
 
     // Constructors
 
-        //- Construct from components
+        //- Construct from components with discretization and expansion ratio
-        lineDivide(const curvedEdge&, const label, const scalar = 1.0);
+        lineDivide
+        (
+            const curvedEdge&,
+            const label ndiv,
+            const scalar xratio = 1.0
+        );
 
 
     // Member Functions

applications/utilities/mesh/generation/blockMesh/curvedEdges/lineEdge.C

@@ -22,58 +22,47 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    line class : defines a straight line between the start point and the
-    end point
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "lineEdge.H"
-
+#include "addToRunTimeSelectionTable.H"
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
-defineTypeNameAndDebug(lineEdge, 0);
+namespace Foam
-
+{
-// Add the curvedEdge constructor functions to the hash tables
+    defineTypeNameAndDebug(lineEdge, 0);
-curvedEdge::addIstreamConstructorToTable<lineEdge>
+    addToRunTimeSelectionTable(curvedEdge, lineEdge, Istream);
-    addLineEdgeIstreamConstructorToTable_;
+}
 
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::lineEdge::lineEdge
-lineEdge::lineEdge
 (
     const pointField& points,
     const label start,
     const label end
 )
 :
-    curvedEdge(points, start, end),
+    curvedEdge(points, start, end)
-    startPoint_(points_[start_]),
-    direction_(points_[end_] - points_[start_])
 {}
 
 
-// Construct from Istream
+Foam::lineEdge::lineEdge(const pointField& points, Istream& is)
-lineEdge::lineEdge(const pointField& points, Istream& is)
 :
-    curvedEdge(points, is),
+    curvedEdge(points, is)
-    startPoint_(points_[start_]),
-    direction_(points_[end_] - points_[start_])
 {}
 
+// * * * * * * * * * * * * * * * * Destructor * * * * * * * * * * * * * * * * //
+
+Foam::lineEdge::~lineEdge()
+{}
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-vector lineEdge::position(const scalar lambda) const
+Foam::point Foam::lineEdge::position(const scalar lambda) const
 {
     if (lambda < 0 || lambda > 1)
     {
@@ -82,19 +71,14 @@ vector lineEdge::position(const scalar lambda) const
             << abort(FatalError);
     }
 
-    return startPoint_ + lambda*direction_;
+    return points_[start_] + lambda * (points_[end_] - points_[start_]);
 }
 
 
-//- Return the length of the curve
+Foam::scalar Foam::lineEdge::length() const
-scalar lineEdge::length() const
 {
-    return mag(direction_);
+    return mag(points_[end_] - points_[start_]);
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/lineEdge.H

@@ -26,8 +26,7 @@ Class
     Foam::lineEdge
 
 Description
-    lineEdge class : defines a straight line between the start point and the
+    A straight edge between the start point and the end point.
-    end point
 
 SourceFiles
     lineEdge.C
@@ -45,7 +44,7 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class lineEdge Declaration
+                          Class lineEdge Declaration
 \*---------------------------------------------------------------------------*/
 
 
@@ -53,11 +52,13 @@ class lineEdge
 :
     public curvedEdge
 {
-    // Private data
+    // Private Member Functions
 
-        vector startPoint_;
+        //- Disallow default bitwise copy construct
-        vector direction_;
+        lineEdge(const lineEdge&);
 
+        //- Disallow default bitwise assignment
+        void operator=(const lineEdge&);
 
 public:
 
@@ -67,22 +68,21 @@ public:
     // Constructors
 
         //- Construct from components
-        lineEdge(const pointField& points, const label start, const label end);
+        lineEdge(const pointField&, const label start, const label end);
 
-        //- Construct from Istream setting pointsList
+        //- Construct from Istream with a pointField
-        lineEdge(const pointField& points, Istream&);
+        lineEdge(const pointField&, Istream&);
 
 
-    // Destructor
+        //- Destructor
-
+        virtual ~lineEdge();
-        virtual ~lineEdge(){}
 
 
     // Member Functions
 
-        //- Return the position of a point on the curve given by
+        //- Return the point position corresponding to the curve parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1
-        vector position(const scalar) const;
+        point position(const scalar) const;
 
         //- Return the length of the curve
         scalar length() const;

applications/utilities/mesh/generation/blockMesh/curvedEdges/polyLine.C

@@ -22,116 +22,162 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    polyLineEdge class : defines a curvedEdge in terms of a series of
-    straight line segments
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "polyLine.H"
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
-// calcDistances generates the distances_ lookup table (cumulative
+void Foam::polyLine::calcParam()
-// distance along the line) from the individual vectors to the points
-
-void polyLine::calcDistances()
 {
-    distances_[0] = 0.0;
+    param_.setSize(points_.size());
 
-    for (label i=1; i<distances_.size(); i++)
+    if (param_.size())
     {
-        distances_[i] =
+        param_[0] = 0.0;
-            mag(controlPoints_[i] - controlPoints_[i-1])
+
-          + distances_[i-1];
+        for (label i=1; i < param_.size(); i++)
+        {
+            param_[i] = param_[i-1] + mag(points_[i] - points_[i-1]);
+        }
+
+        // normalize on the interval 0-1
+        lineLength_ = param_[param_.size()-1];
+        for (label i=1; i < param_.size() - 1; i++)
+        {
+            param_[i] /= lineLength_;
+        }
+        param_[param_.size()-1] = 1.0;
     }
-
+    else
-    lineLength_ = distances_[distances_.size()-1];
-
-    for (label i=1; i<distances_.size(); i++)
     {
-        distances_[i] /= lineLength_;
+        lineLength_ = 0.0;
     }
 }
 
 
+
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-polyLine::polyLine(const pointField& ps)
+Foam::polyLine::polyLine(const pointField& ps, const bool)
 :
-    controlPoints_(ps),
+    points_(ps),
-    distances_(ps.size())
+    lineLength_(0.0),
+    param_(0)
 {
-    if (ps.size())
+    calcParam();
-    {
-        calcDistances();
-    }
 }
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-vector polyLine::position(const scalar lambda) const
+const Foam::pointField& Foam::polyLine::points() const
 {
-    // check range of lambda
+    return points_;
-
-    if (lambda < 0 || lambda > 1)
-    {
-        FatalErrorIn("polyLine::position(const scalar)")
-            << "Parameter out of range, "
-            << "lambda = " << lambda
-            << abort(FatalError);
-    }
-
-    // Quick calc of endpoints
-
-    if (lambda < SMALL)
-    {
-        return controlPoints_[0];
-    }
-    else if (lambda > 1 - SMALL)
-    {
-        return controlPoints_[controlPoints_.size()-1];
-    }
-
-
-    // search table of cumulative distance to find which linesegment we
-    // are on
-
-    label i(0);
-    do
-    {
-        i++;
-    } while (distances_[i] < lambda);
-
-    i--;               // we overshot!
-
-    // construct position vector
-    scalar offsetDist =
-        (lambda - distances_[i])
-       /(distances_[i+1] - distances_[i]);
-
-    vector offsetV = controlPoints_[i+1] - controlPoints_[i];
-
-    return controlPoints_[i] + offsetDist*offsetV;
 }
 
 
-scalar polyLine::length() const
+Foam::label Foam::polyLine::nSegments() const
+{
+    return points_.size()-1;
+}
+
+
+Foam::label Foam::polyLine::localParameter(scalar& lambda) const
+{
+    // check endpoints
+    if (lambda < SMALL)
+    {
+        lambda = 0;
+        return 0;
+    }
+    else if (lambda > 1 - SMALL)
+    {
+        lambda = 1;
+        return nSegments();
+    }
+
+    // search table of cumulative distances to find which line-segment
+    // we are on. Check the upper bound.
+
+    label segmentI = 1;
+    while (param_[segmentI] < lambda)
+    {
+        segmentI++;
+    }
+    segmentI--;   // we want the corresponding lower bound
+
+    // the local parameter [0-1] on this line segment
+    lambda =
+    (
+        ( lambda - param_[segmentI] )
+      / ( param_[segmentI+1] - param_[segmentI] )
+    );
+
+    return segmentI;
+}
+
+
+Foam::point Foam::polyLine::position(const scalar mu) const
+{
+    // check endpoints
+    if (mu < SMALL)
+    {
+        return points_[0];
+    }
+    else if (mu > 1 - SMALL)
+    {
+        return points_[points_.size()-1];
+    }
+
+
+    scalar lambda = mu;
+    label segment = localParameter(lambda);
+    return position(segment, lambda);
+}
+
+
+Foam::point Foam::polyLine::position
+(
+    const label segment,
+    const scalar mu
+) const
+{
+    // out-of-bounds
+    if (segment < 0)
+    {
+        return points_[0];
+    }
+    else if (segment > nSegments())
+    {
+        return points_[points_.size()-1];
+    }
+
+    const point& p0 = points()[segment];
+    const point& p1 = points()[segment+1];
+
+    // special cases - no calculation needed
+    if (mu <= 0.0)
+    {
+        return p0;
+    }
+    else if (mu >= 1.0)
+    {
+        return p1;
+    }
+    else
+    {
+        // linear interpolation
+        return points_[segment] + mu * (p1 - p0);
+    }
+}
+
+
+Foam::scalar Foam::polyLine::length() const
 {
     return lineLength_;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/polyLine.H

@@ -26,9 +26,11 @@ Class
     Foam::polyLine
 
 Description
-    polyLine class : defines a curvedEdge in terms of a series of straight
+    A series of straight line segments, which can also be interpreted as
-    line segments. This is the basic polyLine class which implements
+    a series of control points for splines, etc.
-   just the line (no topology : its not derived from curvedEdge)
+
+ToDo
+    A future implementation could also handle a closed polyLine.
 
 SourceFiles
     polyLine.C
@@ -47,39 +49,71 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class polyLine Declaration
+                          Class polyLine Declaration
 \*---------------------------------------------------------------------------*/
 
 
 class polyLine
 {
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        polyLine(const polyLine&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const polyLine&);
 
 protected:
 
     // Protected data
 
-        pointField controlPoints_;
+        //- The control points or ends of each segments
-        scalarList distances_;
+        pointField points_;
+
+        //- The real line length
         scalar lineLength_;
 
+        //- The rational (0-1) cumulative parameter value for each point
+        scalarList param_;
+
     // Protected member functions
 
-        void calcDistances();
+        //- Precalculate the rational cumulative parameter value
+        //  and the line-length
+        void calcParam();
 
 
+        //- Return the line segment and the local parameter [0..1]
+        //  corresponding to the global lambda [0..1]
+        label localParameter(scalar& lambda) const;
+
 public:
 
     // Constructors
 
         //- Construct from components
-        polyLine(const pointField& ps);
+        polyLine
+        (
+            const pointField&,
+            const bool notImplementedClosed = false
+        );
 
 
     // Member Functions
 
-        //- Return the position of a point on the curve given by
+        //- Return const-access to the control-points
-        //  the parameter 0 <= lambda <= 1
+        const pointField& points() const;
-        vector position(const scalar) const;
+
+        //- Return the number of line segments
+        label nSegments() const;
+
+        //- Return the point position corresponding to the curve parameter
+        //  0 <= lambda <= 1
+        point position(const scalar) const;
+
+        //- Return the point position corresponding to the local parameter
+        //  0 <= lambda <= 1 on the given segment
+        point position(const label segment, const scalar) const;
 
         //- Return the length of the curve
         scalar length() const;

applications/utilities/mesh/generation/blockMesh/curvedEdges/polyLineEdge.C

@@ -22,71 +22,61 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-
 \*---------------------------------------------------------------------------*/
 
 #include "error.H"
-
 #include "polyLineEdge.H"
-
+#include "addToRunTimeSelectionTable.H"
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
-defineTypeNameAndDebug(polyLineEdge, 0);
+namespace Foam
-
+{
-// Add the curvedEdge constructor functions to the hash tables
+    defineTypeNameAndDebug(polyLineEdge, 0);
-curvedEdge::addIstreamConstructorToTable<polyLineEdge>
+    addToRunTimeSelectionTable(curvedEdge, polyLineEdge, Istream);
-    addPolyLineEdgeIstreamConstructorToTable_;
+}
 
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::polyLineEdge::polyLineEdge
-polyLineEdge::polyLineEdge
 (
     const pointField& ps,
     const label start,
     const label end,
-    const pointField& otherpoints
+    const pointField& otherPoints
 )
 :
     curvedEdge(ps, start, end),
-    polyLine(knotlist(ps,start,end,otherpoints))
+    polyLine(appendEndPoints(ps, start_, end_, otherPoints))
 {}
 
 
-// Construct from Istream
+Foam::polyLineEdge::polyLineEdge(const pointField& ps, Istream& is)
-polyLineEdge::polyLineEdge(const pointField& ps, Istream& is)
 :
     curvedEdge(ps, is),
-    polyLine(knotlist(ps, start_, end_, pointField(is)))
+    polyLine(appendEndPoints(ps, start_, end_, pointField(is)))
+{}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::polyLineEdge::~polyLineEdge()
 {}
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-//- Return the position of a point on the curve given by
+Foam::point Foam::polyLineEdge::position(const scalar lambda) const
-//  the parameter 0 <= lambda <= 1
-vector polyLineEdge::position(const scalar lambda) const
 {
     return polyLine::position(lambda);
 }
 
 
-//- Return the length of the curve
+Foam::scalar Foam::polyLineEdge::length() const
-scalar polyLineEdge::length() const
 {
     return polyLine::lineLength_;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/polyLineEdge.H

@@ -26,8 +26,7 @@ Class
     Foam::polyLineEdge
 
 Description
-    polyLineEdge class : defines a curvedEdge in terms of a series of straight
+    A curvedEdge defined in terms of a series of straight line segments.
-    line segments. This is the public face of polyLine
 
 SourceFiles
     polyLineEdge.C
@@ -46,7 +45,7 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class polyLineEdge Declaration
+                        Class polyLineEdge Declaration
 \*---------------------------------------------------------------------------*/
 
 class polyLineEdge
@@ -54,6 +53,14 @@ class polyLineEdge
     public curvedEdge,
     public polyLine
 {
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        polyLineEdge(const polyLineEdge&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const polyLineEdge&);
+
 
 public:
 
@@ -66,26 +73,25 @@ public:
         //- Construct from components
         polyLineEdge
         (
-            const pointField& ps,
+            const pointField&,
             const label start,
             const label end,
-            const pointField& otherpoints
+            const pointField& otherPoints
         );
 
         //- Construct from Istream
-        polyLineEdge(const pointField& ps, Istream&);
+        polyLineEdge(const pointField&, Istream&);
 
 
-    // Destructor
+        //- Destructor
-
+        virtual ~polyLineEdge();
-        virtual ~polyLineEdge(){}
 
 
     // Member Functions
 
-        //- Return the position of a point on the curve given by
+        //- Return the point position corresponding to the curve parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1
-        vector position(const scalar lambda) const;
+        point position(const scalar lambda) const;
 
         //- Return the length of the curve
         scalar length() const;

applications/utilities/mesh/generation/blockMesh/curvedEdges/spline.C

@@ -1,117 +0,0 @@
-/*---------------------------------------------------------------------------*\
-  =========                 |
-  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
-   \\    /   O peration     |
-    \\  /    A nd           | Copyright held by original author
-     \\/     M anipulation  |
--------------------------------------------------------------------------------
-License
-    This file is part of OpenFOAM.
-
-    OpenFOAM is free software; you can redistribute it and/or modify it
-    under the terms of the GNU General Public License as published by the
-    Free Software Foundation; either version 2 of the License, or (at your
-    option) any later version.
-
-    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
-    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
-    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
-    for more details.
-
-    You should have received a copy of the GNU General Public License
-    along with OpenFOAM; if not, write to the Free Software Foundation,
-    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
-
-Description
-    spline class : define a basic spline on nKnots knots - this
-    does not go anywhere near these knots (will act as a base type for
-    various splines that will have real uses)
-
-\*---------------------------------------------------------------------------*/
-
-#include "spline.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
-
-// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
-
-// Construct from components
-spline::spline(const pointField& a)
-:
-    knots_(a)
-{}
-
-
-// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
-
-// function B : this is the blending function for constructing the
-// spline
-
-scalar spline::B(const scalar& tau) const
-{
-    scalar value = 0.0;
-
-    if (tau>=2.0 || tau<=-2.0)
-    {
-        value = 0.0;
-    }
-    else if (tau<=-1.0)
-    {
-        value = pow((2.0 + tau),3.0)/6.0;
-    }
-    else if (tau<=0.0)
-    {
-        value = (4.0 - 6.0*tau*tau - 3.0*tau*tau*tau)/6.0;
-    }
-    else if (tau<=1.0)
-    {
-        value = (4.0 - 6.0*tau*tau + 3.0*tau*tau*tau)/6.0;
-    }
-    else if (tau<=2.0)
-    {
-        value = pow((2.0 - tau),3.0)/6.0;
-    }
-    else
-    {
-        FatalErrorIn("spline::B(const scalar&)")
-            << "How the hell did we get here???, "
-            << "tau = " << tau
-            << abort(FatalError);
-    }
-
-    return value;
-}
-
-
-// position : returns the position along the spline corresponding to the
-// variable mu1
-
-vector spline::position(const scalar mu1) const
-{
-    vector tmp(vector::zero);
-
-    for (register label i=0; i<knots_.size(); i++)
-    {
-        tmp += B((knots_.size() - 1)*mu1 - i)*knots_[i];
-    }
-
-    return tmp;
-}
-
-
-//- Return the length of the spline curve
-scalar spline::length() const
-{
-    notImplemented("spline::length() const");
-    return 1.0;
-}
-
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
-// ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/splineEdge.C

@@ -22,88 +22,96 @@ License
     along with OpenFOAM; if not, write to the Free Software Foundation,
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
-Description
-    simpleSplineEdge : the actual access class for Bspline
-
 \*---------------------------------------------------------------------------*/
 
-#include "error.H"
+#include "splineEdge.H"
+#include "addToRunTimeSelectionTable.H"
 
-#include "simpleSplineEdge.H"
-
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-namespace Foam
-{
 
 // * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
 
-defineTypeNameAndDebug(simpleSplineEdge, 0);
+namespace Foam
+{
+    defineTypeNameAndDebug(splineEdge, 0);
+
+    addToRunTimeSelectionTable
+    (
+        curvedEdge,
+        splineEdge,
+        Istream
+    );
+
+    // compatibility with old names
+    addNamedToRunTimeSelectionTable
+    (
+        curvedEdge,
+        splineEdge,
+        Istream,
+        simpleSpline
+    );
+
+    // compatibility with old names
+    addNamedToRunTimeSelectionTable
+    (
+        curvedEdge,
+        splineEdge,
+        Istream,
+        polySpline
+    );
+
+}
 
-// Add the curvedEdge constructor functions to the hash tables
-curvedEdge::addIstreamConstructorToTable<simpleSplineEdge>
-    addSimpleSplineEdgeIstreamConstructorToTable_;
 
 // * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
 
-// Construct from components
+Foam::splineEdge::splineEdge
-simpleSplineEdge::simpleSplineEdge
 (
     const pointField& points,
     const label start,
     const label end,
-    const pointField& otherknots
+    const pointField& internalPoints
 )
 :
     curvedEdge(points, start, end),
-    BSpline(knotlist(points, start, end, otherknots))
+    CatmullRomSpline(appendEndPoints(points, start, end, internalPoints))
 {}
 
 
-// Construct from components
+Foam::splineEdge::splineEdge(const pointField& points, Istream& is)
-simpleSplineEdge::simpleSplineEdge
-(
-    const pointField& points,
-    const label start,
-    const label end,
-    const pointField& otherknots,
-    const vector& fstend,
-    const vector& sndend
-)
-:
-    curvedEdge(points, start, end),
-    BSpline(knotlist(points, start, end, otherknots), fstend, sndend)
-{}
-
-
-// Construct from Istream
-simpleSplineEdge::simpleSplineEdge(const pointField& points, Istream& is)
 :
     curvedEdge(points, is),
-    BSpline(knotlist(points, start_, end_, pointField(is)))
+    CatmullRomSpline(appendEndPoints(points, start_, end_, pointField(is)))
+{
+    token t(is);
+    is.putBack(t);
+
+    // compatibility - might also have start/end tangents - discard them
+    if (t == token::BEGIN_LIST)
+    {
+        vector tangent0Ignored(is);
+        vector tangent1Ignored(is);
+    }
+}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::splineEdge::~splineEdge()
 {}
 
 
 // * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
 
-//- Return the position of a point on the simple spline curve given by
+Foam::point Foam::splineEdge::position(const scalar mu) const
-//  the parameter 0 <= lambda <= 1
-vector simpleSplineEdge::position(const scalar mu) const
 {
-    return BSpline::position(mu);
+    return CatmullRomSpline::position(mu);
 }
 
 
-//- Return the length of the simple spline curve
+Foam::scalar Foam::splineEdge::length() const
-scalar simpleSplineEdge::length() const
 {
-    notImplemented("simpleSplineEdge::length() const");
+    return CatmullRomSpline::length();
-    return 1.0;
 }
 
 
-// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
-
-} // End namespace Foam
-
 // ************************************************************************* //

applications/utilities/mesh/generation/blockMesh/curvedEdges/splineEdge.H

@@ -23,21 +23,25 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Class
-    Foam::simpleSplineEdge
+    Foam::splineEdge
 
 Description
-    simpleSplineEdge : the actual access class for Bspline
+    A curvedEdge interface for Catmull-Rom splines.
+
+Note
+    For compatibility, also accepts the type names 'polySpline' and
+    'simpleSpline'.
 
 SourceFiles
-    simpleSplineEdge.C
+    splineEdge.C
 
 \*---------------------------------------------------------------------------*/
 
-#ifndef simpleSplineEdge_H
+#ifndef splineEdge_H
-#define simpleSplineEdge_H
+#define splineEdge_H
 
 #include "curvedEdge.H"
-#include "BSpline.H"
+#include "CatmullRomSpline.H"
 
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
@@ -45,60 +49,56 @@ namespace Foam
 {
 
 /*---------------------------------------------------------------------------*\
-                           Class simpleSplineEdge Declaration
+                      Class splineEdge Declaration
 \*---------------------------------------------------------------------------*/
 
-class simpleSplineEdge
+class splineEdge
 :
     public curvedEdge,
-    public BSpline
+    public CatmullRomSpline
 {
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        splineEdge(const splineEdge&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const splineEdge&);
+
 
 public:
 
     //- Runtime type information
-    TypeName("simpleSpline");
+    TypeName("spline");
 
 
     // Constructors
 
         //- Construct from components
-        simpleSplineEdge
+        splineEdge
         (
-            const pointField& ps,
+            const pointField&,
             const label start,
             const label end,
-            const pointField& otherknots
+            const pointField& internalPoints
         );
 
-        //- Construct from components
+        //- Construct from Istream, setting pointsList
-        simpleSplineEdge
+        splineEdge(const pointField&, Istream&);
-        (
-            const pointField& points,
-            const label start,
-            const label end,
-            const pointField& otherknots,
-            const vector& fstend,
-            const vector& sndend
-        );
-
-        //- Construct from Istream setting pointsList
-        simpleSplineEdge(const pointField&, Istream&);
 
 
-    // Destructor
+    //- Destructor
-
+    virtual ~splineEdge();
-        virtual ~simpleSplineEdge(){}
 
 
     // Member Functions
 
-        //- Return the position of a point on the simple spline curve given by
+        //- Return the point position corresponding to the curve parameter
-        //  the parameter 0 <= lambda <= 1
+        //  0 <= lambda <= 1
-        vector position(const scalar mu) const;
+        virtual point position(const scalar) const;
 
-        //- Return the length of the simple spline curve
+        //- Return the length of the spline curve (not implemented)
-        scalar length() const;
+        virtual scalar length() const;
 };
 
 

applications/utilities/mesh/generation/blockMesh/setEdge.C

@@ -100,7 +100,7 @@ void blockDescriptor::setEdge(label edgeI, label start, label end, label dim)
                 scalar gExp = calcGexp(expand_[edgeI], dim);
 
                 // divide the line
-                lineDivide divEdge(curvedEdges_[nCEI], dim, 1.0/gExp);
+                lineDivide divEdge(curvedEdges_[nCEI], dim, 1.0/(gExp + SMALL));
 
                 pointField p = divEdge.points();
                 scalarList d = divEdge.lambdaDivisions();

applications/utilities/mesh/generation/extrude2DMesh/doExtrude2DMesh.C

@@ -61,10 +61,12 @@ int main(int argc, char *argv[])
     argList::validOptions.insert("overwrite", "");
 #   include "setRootCase.H"
 #   include "createTime.H"
+    runTime.functionObjects().off();
 #   include "createPolyMesh.H"
+    const word oldInstance = mesh.pointsInstance();
 
     scalar thickness(readScalar(IStringStream(args.additionalArgs()[0])()));
-    bool overwrite = args.options().found("overwrite");
+    bool overwrite = args.optionFound("overwrite");
 
 
     // Check that mesh is 2D
@@ -87,7 +89,7 @@ int main(int argc, char *argv[])
     // ~~~~~~~~~~~~~~~~~~~~~~
 
     scalar minRange = GREAT;
-    direction extrudeDir = -1;
+    direction extrudeDir = 4;   //illegal value.
 
     for (direction dir = 0; dir < 3; dir++)
     {
@@ -181,6 +183,10 @@ int main(int argc, char *argv[])
     {
         runTime++;
     }
+    else
+    {
+        mesh.setInstance(oldInstance);
+    }
 
     // Take over refinement levels and write to new time directory.
     Pout<< "Writing extruded mesh to time " << runTime.timeName() << nl

applications/utilities/mesh/generation/extrudeMesh/Allwclean

@@ -1,6 +1,8 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 wclean libso extrudeModel
 wclean
 
+# ----------------------------------------------------------------- end-of-file

applications/utilities/mesh/generation/extrudeMesh/Allwmake

@@ -1,6 +1,8 @@
 #!/bin/sh
+cd ${0%/*} || exit 1    # run from this directory
 set -x
 
 wmake libso extrudeModel
 wmake
 
+# ----------------------------------------------------------------- end-of-file

applications/utilities/mesh/generation/extrudeMesh/Make/options

@@ -1,8 +1,8 @@
 EXE_INC = \
     -IextrudedMesh \
     -IextrudeModel/lnInclude \
-    -I$(FOAM_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
-    -I$(FOAM_SRC)/dynamicMesh/lnInclude 
+    -I$(LIB_SRC)/dynamicMesh/lnInclude
 
 EXE_LIBS = \
     -lmeshTools \

applications/utilities/mesh/generation/extrudeMesh/extrudeMesh.C

@@ -23,7 +23,9 @@ License
     Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
 
 Description
-    Extrude mesh from existing patch or from patch read from file.
+    Extrude mesh from existing patch (by default outwards facing normals;
+    optional flips faces) or from patch read from file.
+
     Note: Merges close points so be careful.
 
     Type of extrusion prescribed by run-time selectable model.
@@ -54,55 +56,47 @@ using namespace Foam;
 
 int main(int argc, char *argv[])
 {
-#   include "setRoots.H"
+#   include "setRootCase.H"
 #   include "createTimeExtruded.H"
 
-
-    if (args.options().found("sourceRoot") == args.options().found("surface"))
-    {
-        FatalErrorIn(args.executable())
-            << "Need to specify either -sourceRoot/Case/Patch or -surface"
-            << " option to specify the source of the patch to extrude"
-            << exit(FatalError);
-    }
-
-
     autoPtr<extrudedMesh> meshPtr(NULL);
 
-    autoPtr<extrudeModel> model
+    IOdictionary dict
     (
-        extrudeModel::New
+        IOobject
         (
-            IOdictionary
+            "extrudeProperties",
-            (
+            runTimeExtruded.constant(),
-                IOobject
+            runTimeExtruded,
-                (
+            IOobject::MUST_READ
-                    "extrudeProperties",
-                    runTimeExtruded.constant(),
-                    runTimeExtruded,
-                    IOobject::MUST_READ
-                )
-            )
         )
     );
 
-    if (args.options().found("sourceRoot"))
+    autoPtr<extrudeModel> model(extrudeModel::New(dict));
+
+    const word sourceType(dict.lookup("constructFrom"));
+
+    autoPtr<faceMesh> fMesh;
+
+    if (sourceType == "patch")
     {
-        fileName rootDirSource(args.options()["sourceRoot"]);
+        fileName sourceCasePath(dict.lookup("sourceCase"));
-        fileName caseDirSource(args.options()["sourceCase"]);
+        sourceCasePath.expand();
-        fileName patchName(args.options()["sourcePatch"]);
+        fileName sourceRootDir = sourceCasePath.path();
+        fileName sourceCaseDir = sourceCasePath.name();
+        word patchName(dict.lookup("sourcePatch"));
 
         Info<< "Extruding patch " << patchName
-            << " on mesh " << rootDirSource << ' ' << caseDirSource << nl
+            << " on mesh " << sourceCasePath << nl
             << endl;
 
         Time runTime
         (
             Time::controlDictName,
-            rootDirSource,
+            sourceRootDir,
-            caseDirSource
+            sourceCaseDir
         );
-#       include "createPolyMesh.H"
+        #include "createPolyMesh.H"
 
         label patchID = mesh.boundaryMesh().findPatchID(patchName);
 
@@ -116,76 +110,80 @@ int main(int argc, char *argv[])
         }
 
         const polyPatch& pp = mesh.boundaryMesh()[patchID];
+        fMesh.reset(new faceMesh(pp.localFaces(), pp.localPoints()));
 
         {
-            fileName surfName(patchName + ".sMesh");
+            fileName surfName(runTime.path()/patchName + ".sMesh");
-
+            Info<< "Writing patch as surfaceMesh to "
-            Info<< "Writing patch as surfaceMesh to " << surfName << nl << endl;
+                << surfName << nl << endl;
-
-            faceMesh fMesh(pp.localFaces(), pp.localPoints());
-
             OFstream os(surfName);
-            os << fMesh << nl;
+            os << fMesh() << nl;
         }
-
-        meshPtr.reset
-        (
-            new extrudedMesh
-            (
-                IOobject
-                (
-                    extrudedMesh::defaultRegion,
-                    runTimeExtruded.constant(),
-                    runTimeExtruded
-                ),
-                pp,
-                model()
-            )
-        );
     }
-    else
+    else if (sourceType == "surface")
     {
         // Read from surface
-        fileName surfName(args.options()["surface"]);
+        fileName surfName(dict.lookup("surface"));
 
         Info<< "Extruding surfaceMesh read from file " << surfName << nl
             << endl;
 
         IFstream is(surfName);
 
-        faceMesh fMesh(is);
+        fMesh.reset(new faceMesh(is));
 
-        Info<< "Read patch from file " << surfName << ':' << nl
+        Info<< "Read patch from file " << surfName << nl
-            << "    points : " << fMesh.points().size() << nl
+            << endl;
-            << "    faces  : " << fMesh.size() << nl
+    }
+    else
+    {
+        FatalErrorIn(args.executable())
+            << "Illegal 'constructFrom' specification. Should either be "
+            << "patch or surface." << exit(FatalError);
+    }
+
+    Switch flipNormals(dict.lookup("flipNormals"));
+
+    if (flipNormals)
+    {
+        Info<< "Flipping faces." << nl << endl;
+
+        faceList faces(fMesh().size());
+        forAll(faces, i)
+        {
+            faces[i] = fMesh()[i].reverseFace();
+        }
+        fMesh.reset(new faceMesh(faces, fMesh().localPoints()));
+    }
+
+
+    Info<< "Extruding patch with :" << nl
+            << "    points     : " << fMesh().points().size() << nl
+            << "    faces      : " << fMesh().size() << nl
+            << "    normals[0] : " << fMesh().faceNormals()[0]
+            << nl
             << endl;
 
-        meshPtr.reset
+    extrudedMesh mesh
+    (
+        IOobject
         (
-            new extrudedMesh
+            extrudedMesh::defaultRegion,
-            (
+            runTimeExtruded.constant(),
-                IOobject
+            runTimeExtruded
-                (
+        ),
-                    extrudedMesh::defaultRegion,
+        fMesh(),
-                    runTimeExtruded.constant(),
+        model()
-                    runTimeExtruded
+    );
-                ),
-                fMesh,
-                model()
-            )
-        );        
-    }
-    extrudedMesh& mesh = meshPtr();
 
 
     const boundBox& bb = mesh.globalData().bb();
-    const vector span(bb.max() - bb.min());
+    const vector span = bb.span();
-    const scalar minDim = min(span[0], min(span[1], span[2]));
+    const scalar mergeDim = 1e-4 * bb.minDim();
-    const scalar mergeDim = 1E-4*minDim;
 
-    Pout<< "Mesh bounding box:" << bb << nl
+    Info<< "Mesh bounding box : " << bb << nl
-        << "        with span:" << span << nl
+        << "        with span : " << span << nl
-        << "Merge distance   :" << mergeDim << nl
+        << "Merge distance    : " << mergeDim << nl
         << endl;
 
     const polyBoundaryMesh& patches = mesh.boundaryMesh();
@@ -204,7 +202,7 @@ int main(int argc, char *argv[])
     // ~~~~~~~~~~~~~~
 
     {
-        Pout<< "Collapsing edges < " << mergeDim << " ..." << nl << endl;
+        Info<< "Collapsing edges < " << mergeDim << " ..." << nl << endl;
 
         // Edge collapsing engine
         edgeCollapser collapser(mesh);
@@ -220,7 +218,7 @@ int main(int argc, char *argv[])
 
             if (d < mergeDim)
             {
-                Pout<< "Merging edge " << e << " since length " << d
+                Info<< "Merging edge " << e << " since length " << d
                     << " << " << mergeDim << nl;
 
                 // Collapse edge to e[0]
@@ -253,10 +251,11 @@ int main(int argc, char *argv[])
     // Merging front and back patch faces
     // ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-    if (args.options().found("mergeFaces"))
+    Switch mergeFaces(dict.lookup("mergeFaces"));
+    if (mergeFaces)
     {
-        Pout<< "Assuming full 360 degree axisymmetric case;"
+        Info<< "Assuming full 360 degree axisymmetric case;"
-            << " stitching faces on patches " 
+            << " stitching faces on patches "
             << patches[origPatchID].name() << " and "
             << patches[otherPatchID].name() << " together ..." << nl << endl;
 
@@ -304,7 +303,7 @@ int main(int argc, char *argv[])
         );
 
         // Execute all polyMeshModifiers
-        autoPtr<mapPolyMesh> morphMap = stitcher.changeMesh();
+        autoPtr<mapPolyMesh> morphMap = stitcher.changeMesh(true);
 
         mesh.movePoints(morphMap->preMotionPoints());
     }

applications/utilities/mesh/generation/extrudeMesh/extrudeModel/Make/options

@@ -1,6 +1,6 @@
 EXE_INC = \
-    -I$(FOAM_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
-    -I$(FOAM_SRC)/dynamicMesh/lnInclude
+    -I$(LIB_SRC)/dynamicMesh/lnInclude
 
 EXE_LIBS = \
     -lmeshTools \

applications/utilities/mesh/generation/extrudeMesh/extrudeModel/linearNormal/linearNormal.C

@@ -47,7 +47,14 @@ linearNormal::linearNormal(const dictionary& dict)
 :
     extrudeModel(typeName, dict),
     thickness_(readScalar(coeffDict_.lookup("thickness")))
-{}
+{
+    if (thickness_ <= SMALL)
+    {
+        FatalErrorIn("linearNormal(const dictionary&)")
+            << "thickness should be positive : " << thickness_
+            << exit(FatalError);
+    }
+}
 
 
 // * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //

applications/utilities/mesh/generation/extrudeMesh/extrudeModel/wedge/wedge.C

@@ -48,7 +48,7 @@ wedge::wedge(const dictionary& dict)
 :
     extrudeModel(typeName, dict),
     axisPt_(coeffDict_.lookup("axisPt")),
-    axisNormal_(coeffDict_.lookup("axisNormal")),
+    axis_(coeffDict_.lookup("axis")),
     angle_
     (
         readScalar(coeffDict_.lookup("angle"))
@@ -88,7 +88,8 @@ point wedge::operator()
     }
     else
     {
-        sliceAngle = angle_*(layer + 1)/nLayers_;
+        //sliceAngle = angle_*(layer + 1)/nLayers_;
+        sliceAngle = angle_*layer/nLayers_;
     }
 
     // Find projection onto axis (or rather decompose surfacePoint
@@ -96,7 +97,7 @@ point wedge::operator()
     // of surface point and surface normal.
     point d = surfacePoint - axisPt_;
 
-    d -= (axisNormal_ & d)*axisNormal_;
+    d -= (axis_ & d)*axis_;
 
     scalar dMag = mag(d);
 
@@ -107,7 +108,7 @@ point wedge::operator()
 
     if (dMag > VSMALL)
     {
-        vector n = (d/dMag) ^ axisNormal_;
+        vector n = (d/dMag) ^ axis_;
 
         rotatedPoint +=
           + cos(sliceAngle)*d
@@ -124,4 +125,3 @@ point wedge::operator()
 } // End namespace Foam
 
 // ************************************************************************* //
-

applications/utilities/mesh/generation/extrudeMesh/extrudeModel/wedge/wedge.H

@@ -60,13 +60,13 @@ class wedge
 {
     // Private data
 
-        //- point on axis
+        //- Point on axis
         const point axisPt_;
 
-        //- normalized direction of axis
+        //- Normalized direction of axis
-        const vector axisNormal_;
+        const vector axis_;
 
-        //- overall angle (radians)
+        //- Overall angle (radians)
         const scalar angle_;
 
 
@@ -80,6 +80,7 @@ public:
         //- Construct from components
         wedge(const dictionary& dict);
 
+
     //- Destrcuctor
     ~wedge();
 

applications/utilities/mesh/generation/extrudeMesh/extrudeProperties

@@ -1,7 +1,7 @@
 /*--------------------------------*- C++ -*----------------------------------*\
 | =========                 |                                                 |
 | \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox           |
-|  \\    /   O peration     | Version:  1.5                                   |
+|  \\    /   O peration     | Version:  1.6                                   |
 |   \\  /    A nd           | Web:      http://www.OpenFOAM.org               |
 |    \\/     M anipulation  |                                                 |
 \*---------------------------------------------------------------------------*/
@@ -14,23 +14,50 @@ FoamFile
 }
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
-extrudeModel        wedge;
+// Where to get surface from: either from surface ('surface') or
+// from (flipped) patch of existing case ('patch')
+constructFrom patch;    //surface;
+
+// If construct from (flipped) patch
+sourceCase "$FOAM_RUN/icoFoam/cavity";
+sourcePatch movingWall;
+
+// Flip surface normals before usage.
+flipNormals false;
+
+// If construct from surface
+surface "movingWall.sMesh";
+
+
+// Do front and back need to be merged? Usually only makes sense for 360
+// degree wedges.
+mergeFaces true;
+
+
+//- Linear extrusion in point-normal direction
 //extrudeModel        linearNormal;
+
+//- Wedge extrusion. If nLayers is 1 assumes symmetry around plane.
+extrudeModel        wedge;
+
+//- Extrudes into sphere around (0 0 0)
 //extrudeModel        linearRadial;
+
+//- Extrudes into sphere with grading according to pressure (atmospherics)
 //extrudeModel        sigmaRadial;
 
-nLayers             1;
+nLayers             20;
 
 wedgeCoeffs
 {
-    axisPt          (0 0 0);
+    axisPt      (0 0.1 0);
-    axisNormal      (0 -1 0);
+    axis        (-1 0 0);
-    angle           2.0;
+    angle       360;  // For nLayers=1 assume symmetry so angle/2 on each side
 }
 
 linearNormalCoeffs
 {
-    thickness       0.1;
+    thickness       0.05;
 }
 
 linearRadialCoeffs