diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/files b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/files new file mode 100644 index 000000000..d77087cf6 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/files @@ -0,0 +1,3 @@ +scalarSnapshots.C + +EXE = $(FOAM_APPBIN)/scalarSnapshots diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencies b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencies new file mode 100644 index 000000000..4c2a22a6b --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencies @@ -0,0 +1 @@ +dependencies up to date diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencyFiles b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencyFiles new file mode 100644 index 000000000..89ac6fc14 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dependencyFiles @@ -0,0 +1,2 @@ +DEPENDENCIES = \ +scalarSnapshots.dep diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dontIncludeDeps b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/dontIncludeDeps new file mode 100644 index 000000000..e69de29bb diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/files b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/files new file mode 100644 index 000000000..d32dc58c9 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/files @@ -0,0 +1,7 @@ +# 1 "files" +# 1 "" +# 1 "" +# 1 "files" +scalarSnapshots.C + +EXE = $(FOAM_APPBIN)/scalarSnapshots diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/filesMacros b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/filesMacros new file mode 100644 index 000000000..d25d56300 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/filesMacros @@ -0,0 +1 @@ +EXE = $(FOAM_APPBIN)/scalarSnapshots diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/includeDeps b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/includeDeps new file mode 100644 index 000000000..02f12179b --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/includeDeps @@ -0,0 +1 @@ +include scalarSnapshots.dep diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/localObjectFiles b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/localObjectFiles new file mode 100644 index 000000000..3409ab6d1 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/localObjectFiles @@ -0,0 +1,2 @@ +LOCAL_OBJECTS = \ +scalarSnapshots.o diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/objectFiles b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/objectFiles new file mode 100644 index 000000000..6830c1927 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/objectFiles @@ -0,0 +1,2 @@ +OBJECTS = \ +$(OBJECTS_DIR)/scalarSnapshots.o diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/options b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/options new file mode 100644 index 000000000..af69621da --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/options @@ -0,0 +1,9 @@ +# 1 "options" +# 1 "" +# 1 "" +# 1 "options" +EXE_INC = -I$(LIB_SRC)/POD/lnInclude -I$(LIB_SRC)/finiteVolume/lnInclude + + + +EXE_LIBS = -lfiniteVolume -lPOD -lODE diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/scalarSnapshots.o b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/scalarSnapshots.o new file mode 100644 index 000000000..558ed1375 Binary files /dev/null and b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/scalarSnapshots.o differ diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/sourceFiles b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/sourceFiles new file mode 100644 index 000000000..59a3e8e69 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/linux64IccDPOpt/sourceFiles @@ -0,0 +1,2 @@ +SOURCE = \ +scalarSnapshots.C diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options new file mode 100644 index 000000000..b3fc4f79b --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options @@ -0,0 +1,9 @@ +EXE_INC = \ + -I$(LIB_SRC)/POD/lnInclude \ + -I$(LIB_SRC)/finiteVolume/lnInclude + +EXE_LIBS = \ + -lfiniteVolume \ + -lPOD \ + -lODE + diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options~ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options~ new file mode 100644 index 000000000..b1b57480e --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/Make/options~ @@ -0,0 +1,9 @@ +EXE_INC = \ + -I../POD/lnInclude \ + -I$(LIB_SRC)/finiteVolume/lnInclude + +EXE_LIBS = \ + -lfiniteVolume \ + -lPOD \ + -lODE + diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C new file mode 100644 index 000000000..d441cd92f --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C @@ -0,0 +1,198 @@ +/*---------------------------------------------------------------------------*\ + ========= | + \\ / F ield | OpenFOAM: The Open Source CFD Toolbox + \\ / O peration | + \\ / A nd | Copyright held by original author + \\/ M anipulation | +------------------------------------------------------------------------------- +License + This file is part of OpenFOAM. + + OpenFOAM is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the + Free Software Foundation; either version 2 of the License, or (at your + option) any later version. + + OpenFOAM is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + for more details. + + You should have received a copy of the GNU General Public License + along with OpenFOAM; if not, write to the Free Software Foundation, + Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +Application + PODecomposition + +Author + Hrvoje Jasak, Wikki Ltd. All rights reserved. + +Description + Calculates proper orthogonal decomposition of a given field set + +\*---------------------------------------------------------------------------*/ + +#include "fvCFD.H" +#include "PODOrthoNormalBases.H" + +// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // + +int main(int argc, char *argv[]) +{ + +# include "setRootCase.H" + +# include "createTime.H" + + // Get times list + instantList Times = runTime.times(); + + const label startTime = 1; + const label endTime = Times.size(); + const label nSnapshots = Times.size() - 1; + + Info << "Number of snapshots: " << nSnapshots << endl; + + // Create a list of snapshots + PtrList fields(nSnapshots); + + runTime.setTime(Times[startTime], startTime); + +# include "createMesh.H" + + IOdictionary PODsolverDict + ( + IOobject + ( + "PODsolverDict", + runTime.system(), + mesh, + IOobject::MUST_READ, + IOobject::NO_WRITE + ) + ); + + scalar accuracy = + readScalar + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("accuracy") + ); + + Info << "Seeking accuracy: " << accuracy << endl; + + word fieldName + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("field") + ); + + label snapI = 0; + + labelList timeIndices(nSnapshots); + + for (label i = startTime; i < endTime; i++) + { + runTime.setTime(Times[i], i); + + Info<< "Time = " << runTime.timeName() << endl; + + mesh.readUpdate(); + + Info<< " Reading " << fieldName << endl; + fields.set + ( + snapI, + new volScalarField + ( + IOobject + ( + fieldName, + runTime.timeName(), + mesh, + IOobject::MUST_READ + ), + mesh + ) + ); + + // Rename the field + fields[snapI].rename(fieldName + name(i)); + timeIndices[snapI] = i; + snapI++; + + Info<< endl; + } + + timeIndices.setSize(snapI); + + // Read accurary + Info<< "Reading \n" << endl; + + scalarPODOrthoNormalBase eb(fields, accuracy); + + const scalarRectangularMatrix& coeffs = eb.interpolationCoeffs(); + + // Check all snapshots + forAll (fields, fieldI) + { + runTime.setTime(Times[timeIndices[fieldI]], timeIndices[fieldI]); + + volScalarField pReconstruct + ( + IOobject + ( + fieldName + "PODreconstruct", + runTime.timeName(), + mesh, + IOobject::NO_READ + ), + mesh, + dimensionedScalar("zero", fields[fieldI].dimensions(), 0) + ); + + for (label baseI = 0; baseI < eb.baseSize(); baseI++) + { + pReconstruct += + coeffs[fieldI][baseI]*eb.orthoField(baseI); + } + + scalar sumFieldError = + Foam::sqrt + ( + sumSqr + ( + pReconstruct.internalField() + - fields[fieldI].internalField() + ) + ); + + scalar measure = + Foam::sqrt(sumSqr(fields[fieldI].internalField())) + SMALL; + + scalar sumFieldRelError = sumFieldError/measure; + + Info<< "Field error: absolute = " << sumFieldError + << " relative = " << sumFieldRelError + << " measure = " << measure << endl; + + pReconstruct.write(); + } + + // Write out all fields + runTime.setTime(Times[startTime], startTime); + Info<< "Writing POD base for Time = " << runTime.timeName() << endl; + + for (label i = 0; i < eb.baseSize(); i++) + { + eb.orthoField(i).write(); + } + + Info << endl; + + Info<< "End\n" << endl; + + return(0); +} + + +// ************************************************************************* // diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C~ b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C~ new file mode 100644 index 000000000..dac41c9a2 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.C~ @@ -0,0 +1,198 @@ +/*---------------------------------------------------------------------------*\ + ========= | + \\ / F ield | OpenFOAM: The Open Source CFD Toolbox + \\ / O peration | + \\ / A nd | Copyright held by original author + \\/ M anipulation | +------------------------------------------------------------------------------- +License + This file is part of OpenFOAM. + + OpenFOAM is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the + Free Software Foundation; either version 2 of the License, or (at your + option) any later version. + + OpenFOAM is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + for more details. + + You should have received a copy of the GNU General Public License + along with OpenFOAM; if not, write to the Free Software Foundation, + Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +Application + PODecomposition + +Author + Hrvoje Jasak, Wikki Ltd. All rights reserved. + +Description + Calculates proper orthogonal decomposition of a given field set + +\*---------------------------------------------------------------------------*/ + +#include "fvCFD.H" +#include "PODOrthoNormalBases.H" + +// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // + +int main(int argc, char *argv[]) +{ + +# include "setRootCase.H" + +# include "createTime.H" + + // Get times list + instantList Times = runTime.times(); + + const label startTime = 1; + const label endTime = Times.size(); + const label nSnapshots = Times.size() - 1; + + Info << "Number of snapshots: " << nSnapshots << endl; + + // Create a list of snapshots + PtrList fields(nSnapshots); + + runTime.setTime(Times[startTime], startTime); + +# include "createMesh.H" + + IOdictionary PODsolverDict + ( + IOobject + ( + "PODsolverDict", + runTime.system(), + mesh, + IOobject::MUST_READ, + IOobject::NO_WRITE + ) + ); + + scalar accuracy = + readScalar + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("accuracy") + ); + + Info << "Seeking accuracy: " << accuracy << endl; + + word fieldName + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("field") + ); + + label snapI = 0; + + labelList timeIndices(nSnapshots); + + for (label i = startTime; i < endTime; i++) + { + runTime.setTime(Times[i], i); + + Info<< "Time = " << runTime.timeName() << endl; + + mesh.readUpdate(); + + Info<< " Reading " << fieldName << endl; + fields.set + ( + snapI, + new volScalarField + ( + IOobject + ( + fieldName, + runTime.timeName(), + mesh, + IOobject::MUST_READ + ), + mesh + ) + ); + + // Rename the field + fields[snapI].rename(fieldName + name(i)); + timeIndices[snapI] = i; + snapI++; + + Info<< endl; + } + + timeIndices.setSize(snapI); + + // Read accurary + Info<< "Reading \n" << endl; + + scalarPODOrthoNormalBase eb(fields, accuracy); + + const Matrix& coeffs = eb.interpolationCoeffs(); + + // Check all snapshots + forAll (fields, fieldI) + { + runTime.setTime(Times[timeIndices[fieldI]], timeIndices[fieldI]); + + volScalarField pReconstruct + ( + IOobject + ( + fieldName + "PODreconstruct", + runTime.timeName(), + mesh, + IOobject::NO_READ + ), + mesh, + dimensionedScalar("zero", fields[fieldI].dimensions(), 0) + ); + + for (label baseI = 0; baseI < eb.baseSize(); baseI++) + { + pReconstruct += + coeffs[fieldI][baseI]*eb.orthoField(baseI); + } + + scalar sumFieldError = + Foam::sqrt + ( + sumSqr + ( + pReconstruct.internalField() + - fields[fieldI].internalField() + ) + ); + + scalar measure = + Foam::sqrt(sumSqr(fields[fieldI].internalField())) + SMALL; + + scalar sumFieldRelError = sumFieldError/measure; + + Info<< "Field error: absolute = " << sumFieldError + << " relative = " << sumFieldRelError + << " measure = " << measure << endl; + + pReconstruct.write(); + } + + // Write out all fields + runTime.setTime(Times[startTime], startTime); + Info<< "Writing POD base for Time = " << runTime.timeName() << endl; + + for (label i = 0; i < eb.baseSize(); i++) + { + eb.orthoField(i).write(); + } + + Info << endl; + + Info<< "End\n" << endl; + + return(0); +} + + +// ************************************************************************* // diff --git a/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.dep b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.dep new file mode 100644 index 000000000..5cdca6bc2 --- /dev/null +++ b/applications/utilities/postProcessing/POD/scalarSnapshots/scalarSnapshots.dep @@ -0,0 +1,550 @@ +$(OBJECTS_DIR)/scalarSnapshots.o: scalarSnapshots.dep +scalarSnapshots.dep: scalarSnapshots.C +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/finiteVolume/lnInclude/fvCFD.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/parRun.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/OPstream.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/Pstream.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/labelList.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/label.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/int.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/word.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/string.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/char.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/Hasher.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/stringI.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/wordI.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/long.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/longLong.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/pTraits.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/direction.H +scalarSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/List.H 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a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/files b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/files new file mode 100644 index 000000000..d6876d0af --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/files @@ -0,0 +1,3 @@ +vectorSnapshots.C + +EXE = $(FOAM_APPBIN)/vectorSnapshots diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencies b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencies new file mode 100644 index 000000000..4c2a22a6b --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencies @@ -0,0 +1 @@ +dependencies up to date diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencyFiles b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencyFiles new file mode 100644 index 000000000..7a6e34ffa --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dependencyFiles @@ -0,0 +1,2 @@ +DEPENDENCIES = \ +vectorSnapshots.dep diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dontIncludeDeps b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/dontIncludeDeps new file mode 100644 index 000000000..e69de29bb diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/files b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/files new file mode 100644 index 000000000..d39e0446a --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/files @@ -0,0 +1,7 @@ +# 1 "files" +# 1 "" +# 1 "" +# 1 "files" +vectorSnapshots.C + +EXE = $(FOAM_APPBIN)/vectorSnapshots diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/filesMacros b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/filesMacros new file mode 100644 index 000000000..3ee90b53e --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/filesMacros @@ -0,0 +1 @@ +EXE = $(FOAM_APPBIN)/vectorSnapshots diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/includeDeps b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/includeDeps new file mode 100644 index 000000000..6e9c07a22 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/includeDeps @@ -0,0 +1 @@ +include vectorSnapshots.dep diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/localObjectFiles b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/localObjectFiles new file mode 100644 index 000000000..1726d9cd6 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/localObjectFiles @@ -0,0 +1,2 @@ +LOCAL_OBJECTS = \ +vectorSnapshots.o diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/objectFiles b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/objectFiles new file mode 100644 index 000000000..f5328cd15 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/objectFiles @@ -0,0 +1,2 @@ +OBJECTS = \ +$(OBJECTS_DIR)/vectorSnapshots.o diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/options b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/options new file mode 100644 index 000000000..af69621da --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/options @@ -0,0 +1,9 @@ +# 1 "options" +# 1 "" +# 1 "" +# 1 "options" +EXE_INC = -I$(LIB_SRC)/POD/lnInclude -I$(LIB_SRC)/finiteVolume/lnInclude + + + +EXE_LIBS = -lfiniteVolume -lPOD -lODE diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/sourceFiles b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/sourceFiles new file mode 100644 index 000000000..e91ed0e65 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/sourceFiles @@ -0,0 +1,2 @@ +SOURCE = \ +vectorSnapshots.C diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/vectorSnapshots.o b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/vectorSnapshots.o new file mode 100644 index 000000000..21209e1fb Binary files /dev/null and b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/linux64IccDPOpt/vectorSnapshots.o differ diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options new file mode 100644 index 000000000..235dfa674 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options @@ -0,0 +1,8 @@ +EXE_INC = \ + -I$(LIB_SRC)/POD/lnInclude \ + -I$(LIB_SRC)/finiteVolume/lnInclude + +EXE_LIBS = \ + -lfiniteVolume \ + -lPOD \ + -lODE diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options~ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options~ new file mode 100644 index 000000000..bf2892e35 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/Make/options~ @@ -0,0 +1,8 @@ +EXE_INC = \ + -I../POD/lnInclude \ + -I$(LIB_SRC)/finiteVolume/lnInclude + +EXE_LIBS = \ + -lfiniteVolume \ + -lPOD \ + -lODE diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C new file mode 100644 index 000000000..cf00ac682 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C @@ -0,0 +1,199 @@ +/*---------------------------------------------------------------------------*\ + ========= | + \\ / F ield | OpenFOAM: The Open Source CFD Toolbox + \\ / O peration | + \\ / A nd | Copyright held by original author + \\/ M anipulation | +------------------------------------------------------------------------------- +License + This file is part of OpenFOAM. + + OpenFOAM is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the + Free Software Foundation; either version 2 of the License, or (at your + option) any later version. + + OpenFOAM is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + for more details. + + You should have received a copy of the GNU General Public License + along with OpenFOAM; if not, write to the Free Software Foundation, + Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +Application + PODecomposition + +Author + Hrvoje Jasak, Wikki Ltd. All rights reserved. + +Description + Calculates proper orthogonal decomposition of a given field set + +\*---------------------------------------------------------------------------*/ + +#include "fvCFD.H" +#include "PODOrthoNormalBases.H" +#include "VectorSpace.H" + +// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // + +int main(int argc, char *argv[]) +{ + +# include "setRootCase.H" + +# include "createTime.H" + + // Get times list + instantList Times = runTime.times(); + + const label startTime = 1; + const label endTime = Times.size(); + const label nSnapshots = Times.size() - 1; + + Info << "Number of snapshots: " << nSnapshots << endl; + + // Create a list of snapshots + PtrList fields(nSnapshots); + + runTime.setTime(Times[startTime], startTime); + +# include "createMesh.H" + + IOdictionary PODsolverDict + ( + IOobject + ( + "PODsolverDict", + runTime.system(), + mesh, + IOobject::MUST_READ, + IOobject::NO_WRITE + ) + ); + + scalar accuracy = + readScalar + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("accuracy") + ); + + Info << "Seeking accuracy: " << accuracy << endl; + + word fieldName + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("velocity") + ); + + label snapI = 0; + + labelList timeIndices(nSnapshots); + + for (label i = startTime; i < endTime; i++) + { + runTime.setTime(Times[i], i); + + Info<< "Time = " << runTime.timeName() << endl; + + mesh.readUpdate(); + + Info<< " Reading " << fieldName << endl; + fields.set + ( + snapI, + new volVectorField + ( + IOobject + ( + fieldName, + runTime.timeName(), + mesh, + IOobject::MUST_READ + ), + mesh + ) + ); + + // Rename the field + fields[snapI].rename(fieldName + name(i)); + timeIndices[snapI] = i; + snapI++; + + Info<< endl; + } + + timeIndices.setSize(snapI); + + vectorPODOrthoNormalBase eb(fields, accuracy); + + const RectangularMatrix& coeffs = eb.interpolationCoeffs(); + + // Check all snapshots + forAll (fields, fieldI) + { + runTime.setTime(Times[timeIndices[fieldI]], timeIndices[fieldI]); + + volVectorField reconstruct + ( + IOobject + ( + fieldName + "PODreconstruct", + runTime.timeName(), + mesh, + IOobject::NO_READ + ), + mesh, + dimensionedVector + ( + "zero", + fields[fieldI].dimensions(), + vector::zero + ) + ); + + for (label baseI = 0; baseI < eb.baseSize(); baseI++) + { + reconstruct += + cmptMultiply + ( + eb.orthoField(baseI), + coeffs[fieldI][baseI] + ); + } + + scalar sumFieldError = + sumMag + ( + reconstruct.internalField() + - fields[fieldI].internalField() + ); + + scalar measure = sumMag(fields[fieldI].internalField()) + SMALL; + + Info<< "Field error: absolute = " << sumFieldError << " relative = " + << sumFieldError/measure << " measure = " << measure + << endl; + + reconstruct.write(); + } + + // Write out all fields + runTime.setTime(Times[startTime], startTime); + Info<< "Writing POD base for Time = " << runTime.timeName() << endl; + + for (label i = 0; i < eb.baseSize(); i++) + { + eb.orthoField(i).write(); + } + + Info << endl; + + Info<< "End\n" << endl; + + return(0); +} + + +// ************************************************************************* // diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C~ b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C~ new file mode 100644 index 000000000..22905d4f1 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.C~ @@ -0,0 +1,199 @@ +/*---------------------------------------------------------------------------*\ + ========= | + \\ / F ield | OpenFOAM: The Open Source CFD Toolbox + \\ / O peration | + \\ / A nd | Copyright held by original author + \\/ M anipulation | +------------------------------------------------------------------------------- +License + This file is part of OpenFOAM. + + OpenFOAM is free software; you can redistribute it and/or modify it + under the terms of the GNU General Public License as published by the + Free Software Foundation; either version 2 of the License, or (at your + option) any later version. + + OpenFOAM is distributed in the hope that it will be useful, but WITHOUT + ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or + FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License + for more details. + + You should have received a copy of the GNU General Public License + along with OpenFOAM; if not, write to the Free Software Foundation, + Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA + +Application + PODecomposition + +Author + Hrvoje Jasak, Wikki Ltd. All rights reserved. + +Description + Calculates proper orthogonal decomposition of a given field set + +\*---------------------------------------------------------------------------*/ + +#include "fvCFD.H" +#include "PODOrthoNormalBases.H" +#include "VectorSpace.H" + +// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * // + +int main(int argc, char *argv[]) +{ + +# include "setRootCase.H" + +# include "createTime.H" + + // Get times list + instantList Times = runTime.times(); + + const label startTime = 1; + const label endTime = Times.size(); + const label nSnapshots = Times.size() - 1; + + Info << "Number of snapshots: " << nSnapshots << endl; + + // Create a list of snapshots + PtrList fields(nSnapshots); + + runTime.setTime(Times[startTime], startTime); + +# include "createMesh.H" + + IOdictionary PODsolverDict + ( + IOobject + ( + "PODsolverDict", + runTime.system(), + mesh, + IOobject::MUST_READ, + IOobject::NO_WRITE + ) + ); + + scalar accuracy = + readScalar + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("accuracy") + ); + + Info << "Seeking accuracy: " << accuracy << endl; + + word fieldName + ( + PODsolverDict.subDict("scalarTransportCoeffs").lookup("velocity") + ); + + label snapI = 0; + + labelList timeIndices(nSnapshots); + + for (label i = startTime; i < endTime; i++) + { + runTime.setTime(Times[i], i); + + Info<< "Time = " << runTime.timeName() << endl; + + mesh.readUpdate(); + + Info<< " Reading " << fieldName << endl; + fields.set + ( + snapI, + new volVectorField + ( + IOobject + ( + fieldName, + runTime.timeName(), + mesh, + IOobject::MUST_READ + ), + mesh + ) + ); + + // Rename the field + fields[snapI].rename(fieldName + name(i)); + timeIndices[snapI] = i; + snapI++; + + Info<< endl; + } + + timeIndices.setSize(snapI); + + vectorPODOrthoNormalBase eb(fields, accuracy); + + const Matrix& coeffs = eb.interpolationCoeffs(); + + // Check all snapshots + forAll (fields, fieldI) + { + runTime.setTime(Times[timeIndices[fieldI]], timeIndices[fieldI]); + + volVectorField reconstruct + ( + IOobject + ( + fieldName + "PODreconstruct", + runTime.timeName(), + mesh, + IOobject::NO_READ + ), + mesh, + dimensionedVector + ( + "zero", + fields[fieldI].dimensions(), + vector::zero + ) + ); + + for (label baseI = 0; baseI < eb.baseSize(); baseI++) + { + reconstruct += + cmptMultiply + ( + eb.orthoField(baseI), + coeffs[fieldI][baseI] + ); + } + + scalar sumFieldError = + sumMag + ( + reconstruct.internalField() + - fields[fieldI].internalField() + ); + + scalar measure = sumMag(fields[fieldI].internalField()) + SMALL; + + Info<< "Field error: absolute = " << sumFieldError << " relative = " + << sumFieldError/measure << " measure = " << measure + << endl; + + reconstruct.write(); + } + + // Write out all fields + runTime.setTime(Times[startTime], startTime); + Info<< "Writing POD base for Time = " << runTime.timeName() << endl; + + for (label i = 0; i < eb.baseSize(); i++) + { + eb.orthoField(i).write(); + } + + Info << endl; + + Info<< "End\n" << endl; + + return(0); +} + + +// ************************************************************************* // diff --git a/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.dep b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.dep new file mode 100644 index 000000000..edf518979 --- /dev/null +++ b/applications/utilities/postProcessing/POD/vectorSnapshots/vectorSnapshots.dep @@ -0,0 +1,523 @@ +$(OBJECTS_DIR)/vectorSnapshots.o: vectorSnapshots.dep +vectorSnapshots.dep: vectorSnapshots.C +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/finiteVolume/lnInclude/fvCFD.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/parRun.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/OPstream.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/Pstream.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/labelList.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/label.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/int.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/word.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/string.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/char.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/Hasher.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/stringI.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/wordI.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/long.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/longLong.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/pTraits.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/direction.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/List.H +vectorSnapshots.dep: $(WM_PROJECT_DIR)/src/OpenFOAM/lnInclude/UList.H +vectorSnapshots.dep: 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