Merge branch 'bugfix/partialOveralpGGI' into nextRelease

ThirdParty/rpmBuild/SOURCES/ParMGridGen-1.0.patch

@@ -1,6 +1,31 @@
+diff -ruN ParMGridGen-1.0_orig/Makefile ParMGridGen-1.0/Makefile
+--- ParMGridGen-1.0_orig/Makefile	2017-04-04 15:02:44.020713666 +0200
++++ ParMGridGen-1.0/Makefile	2017-04-04 15:21:48.582647336 +0200
+@@ -1,16 +1,21 @@
+ default:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 
+ serial:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 
+ parallel:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 	(cd ParMGridGen ; make)
+ clean:
++	(mkdir bin)
+ 	(cd MGridGen ; make clean)
+ 	(cd ParMGridGen ; make clean )
+ 
+ realclean:
++	(mkdir bin)
+ 	(cd MGridGen ; make realclean )
+ 	(cd ParMGridGen ; make realclean )
 diff -ruN ParMGridGen-1.0_orig/Makefile.in ParMGridGen-1.0/Makefile.in
---- ParMGridGen-1.0_orig/Makefile.in	2001-12-04 16:30:33.000000000 -0800
+--- ParMGridGen-1.0_orig/Makefile.in	2017-04-04 15:02:44.012713543 +0200
-+++ ParMGridGen-1.0/Makefile.in	2013-08-22 20:07:33.491171127 -0700
++++ ParMGridGen-1.0/Makefile.in	2017-04-04 15:06:00.159742074 +0200
 @@ -1,6 +1,6 @@
  #--------------------------------------------------------------------------
  # Which make to use 
@@ -18,6 +43,15 @@ diff -ruN ParMGridGen-1.0_orig/Makefile.in ParMGridGen-1.0/Makefile.in
  
  # Which loader to use
  LD = cc
+@@ -22,7 +22,7 @@
+ LDOPTIONS = -O3
+ 
+ # Where to put the executable 
+-BINDIR = ../..
++BINDIR = ../../bin
+ 
+ # Additional libraries
+ DMALLOCDIR = /usr/local
 @@ -33,22 +33,25 @@
  
  # In which directories to look for any additional libraries

ThirdParty/rpmBuild/SOURCES/ParMGridGen-1.0.patch_darwin

@@ -79,8 +79,8 @@ diff -ruN ParMGridGen-1.0_orig/MGridGen/Programs/Makefile ParMGridGen-1.0/MGridG
  ifeq ($(ddmalloc),yes)
    DEBUGFLAGS := $(DEBUGFLAGS) -DDMALLOC -DDEBUG
 diff -ruN ParMGridGen-1.0_orig/Makefile.in ParMGridGen-1.0/Makefile.in
---- ParMGridGen-1.0_orig/Makefile.in	2011-12-24 13:54:44.000000000 -0500
+--- ParMGridGen-1.0_orig/Makefile.in	2001-12-05 01:30:33.000000000 +0100
-+++ ParMGridGen-1.0/Makefile.in	2011-12-24 13:49:26.000000000 -0500
++++ ParMGridGen-1.0/Makefile.in	2017-04-04 15:36:04.695980033 +0200
 @@ -1,6 +1,6 @@
  #--------------------------------------------------------------------------
  # Which make to use 
@@ -98,6 +98,15 @@ diff -ruN ParMGridGen-1.0_orig/Makefile.in ParMGridGen-1.0/Makefile.in
  
  # Which loader to use
  LD = cc
+@@ -22,7 +22,7 @@
+ LDOPTIONS = -O3
+ 
+ # Where to put the executable 
+-BINDIR = ../..
++BINDIR = ../../bin
+ 
+ # Additional libraries
+ DMALLOCDIR = /usr/local
 @@ -33,22 +33,25 @@
  
  # In which directories to look for any additional libraries
@@ -129,3 +138,28 @@ diff -ruN ParMGridGen-1.0_orig/Makefile.in ParMGridGen-1.0/Makefile.in
  
  #--------------------------------------------------------------------------
  # 
+diff -ruN ParMGridGen-1.0_orig/Makefile ParMGridGen-1.0/Makefile
+--- ParMGridGen-1.0_orig/Makefile	2001-11-09 00:41:22.000000000 +0100
++++ ParMGridGen-1.0/Makefile	2017-04-04 14:51:04.033914737 +0200
+@@ -1,16 +1,21 @@
+ default:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 
+ serial:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 
+ parallel:
++	(mkdir bin)
+ 	(cd MGridGen ; make)
+ 	(cd ParMGridGen ; make)
+ clean:
++	(mkdir bin)
+ 	(cd MGridGen ; make clean)
+ 	(cd ParMGridGen ; make clean )
+ 
+ realclean:
++	(mkdir bin)
+ 	(cd MGridGen ; make realclean )
+ 	(cd ParMGridGen ; make realclean )

ThirdParty/rpmBuild/SOURCES/ParaView-4.4.0.patch_darwin

@@ -0,0 +1,12 @@
+diff -ruN ParaView-4.3.1_orig/Applications/ParaView-4.3.1_extra_install_Darwin.cmake ParaView-4.3.1/Applications/ParaView-4.3.1_extra_install_Darwin.cmake
+--- ParaView-4.3.1_orig/Applications/ParaView-4.3.1_extra_install_Darwin.cmake	1969-12-31 19:00:00.000000000 -0500
++++ ParaView-4.3.1/Applications/ParaView-4.3.1_extra_install_Darwin.cmake	2013-10-02 19:00:00.000000000 -0400
+@@ -0,0 +1,8 @@
++#
++# Additional install rules for Mac OS X platforms 
++#
++INSTALL (DIRECTORY buildObj/bin/paraview.app
++           DESTINATION ${CMAKE_INSTALL_PREFIX}/bin
++	   USE_SOURCE_PERMISSIONS
++           COMPONENT Runtime)
++

ThirdParty/rpmBuild/SOURCES/libccmio-2.6.1.patch_0

@@ -1,13 +1,13 @@
 diff -ruN libccmio-2.6.1_orig/config/config.gnu.to.star libccmio-2.6.1/config/config.gnu.to.star
---- libccmio-2.6.1_orig/config/config.gnu.to.star	2007-12-17 18:32:03.000000000 -0500
+--- libccmio-2.6.1_orig/config/config.gnu.to.star       2007-12-18 00:32:03.000000000 +0100
-+++ libccmio-2.6.1/config/config.gnu.to.star	2010-12-18 14:50:35.000000000 -0500
++++ libccmio-2.6.1/config/config.gnu.to.star    2017-04-04 13:41:35.000000000 +0200
 @@ -1,4 +1,4 @@
 -#!/bin/sh
 +#!/bin/bash
 
  # $Id: config.gnu.to.star,v 1.4 2006/06/05 21:12:16 geoffp Exp $
 
-@@ -34,6 +34,12 @@
+@@ -34,6 +34,13 @@
      x86_64-unknown-linux-gnu-null)     echo linux64_2.4-x86-glibc_2.2.5     ;;
      ppc64-unknown-linux-gnu-null)      echo linux64_2.6-pwr4-glibc_2.3.3    ;;
      i386-apple-darwin8-null)           echo i386-apple-darwin8              ;;
@@ -17,6 +17,7 @@ diff -ruN libccmio-2.6.1_orig/config/config.gnu.to.star libccmio-2.6.1/config/co
 +    i386-apple-darwin13-null)          echo i386-apple-darwin13             ;;
 +    i386-apple-darwin14-null)          echo i386-apple-darwin14             ;;
 +    i386-apple-darwin15-null)          echo i386-apple-darwin15             ;;
++    i386-apple-darwin16-null)          echo i386-apple-darwin16             ;;
      *)                                 echo unknown                         ;;
  esac
 
@@ -30,15 +31,15 @@ diff -ruN libccmio-2.6.1_orig/config/config.guess libccmio-2.6.1/config/config.g
  #   Copyright (C) 1992, 1993, 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001
  #   Free Software Foundation, Inc.
 diff -ruN libccmio-2.6.1_orig/config/config.system libccmio-2.6.1/config/config.system
---- libccmio-2.6.1_orig/config/config.system	2008-02-25 22:07:16.000000000 -0500
+--- libccmio-2.6.1_orig/config/config.system    2008-02-26 04:07:16.000000000 +0100
-+++ libccmio-2.6.1/config/config.system	2010-12-18 14:51:34.000000000 -0500
++++ libccmio-2.6.1/config/config.system 2017-04-04 13:42:15.000000000 +0200
 @@ -1,4 +1,4 @@
 -#! /bin/sh
 +#! /bin/bash
 
  # $Id: config.system,v 1.2 2005/09/29 22:19:19 geoffp Exp $
 
-@@ -87,6 +87,27 @@
+@@ -87,6 +87,30 @@
      i386-apple-darwin8.11.1)
  	echo i386-apple-darwin8 ;;
 
@@ -62,6 +63,9 @@ diff -ruN libccmio-2.6.1_orig/config/config.system libccmio-2.6.1/config/config.
 +
 +    i386-apple-darwin15.* )
 +       echo i386-apple-darwin15 ;;
++
++    i386-apple-darwin16.* )
++       echo i386-apple-darwin16 ;;
 +
      *)
          echo unknown

ThirdParty/rpmBuild/SPECS/libccmio-2.6.1.spec

@@ -105,6 +105,7 @@ Patch0:                 libccmio-2.6.1.patch_0
     [ ! -d config/i386-apple-darwin13 ] && cp -r config/i386-apple-darwin8 config/i386-apple-darwin13
     [ ! -d config/i386-apple-darwin14 ] && cp -r config/i386-apple-darwin8 config/i386-apple-darwin14
     [ ! -d config/i386-apple-darwin15 ] && cp -r config/i386-apple-darwin8 config/i386-apple-darwin15
+    [ ! -d config/i386-apple-darwin16 ] && cp -r config/i386-apple-darwin8 config/i386-apple-darwin16
 %endif
     # Warning:
     #  1: The name of the ADF library will be renamed to libadf_ccmio since this

applications/utilities/mesh/conversion/star4ToFoam/cellZoneToCellTableId/cellZoneToCellTableId.C

@@ -27,6 +27,7 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "argList.H"
+#include "objectRegistry.H"
 #include "foamTime.H"
 #include "volFields.H"
 #include "OFstream.H"

applications/utilities/mesh/conversion/star4ToFoam/foamMeshToStar/foamMeshToStar.C

@@ -35,6 +35,7 @@ Description
 \*---------------------------------------------------------------------------*/
 
 #include "argList.H"
+#include "objectRegistry.H"
 #include "foamTime.H"
 #include "volFields.H"
 #include "cellModeller.H"

etc/bashrc

@@ -160,10 +160,11 @@ done
 : ${WM_OSTYPE:=POSIX}; export WM_OSTYPE
 
 
-# Compiler: set to Gcc or Icc (for Intel's icc)
+# Compiler: set to Gcc, Icc (for Intel's icc) or Clang
 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 : ${WM_COMPILER:=Gcc}; export WM_COMPILER
 #: ${WM_COMPILER:=Icc}; export WM_COMPILER
+#: ${WM_COMPILER:=Clang}; export WM_COMPILER
 
 export WM_COMPILER_ARCH=
 export WM_COMPILER_LIB_ARCH=
@@ -379,7 +380,7 @@ Darwin)
         echo "Using Macports binaries"
     fi
 
-    export WM_USE_MACPORT=1
+    export WM_USE_MACPORT=0
     export WM_BASE_COMPILER=`echo $WM_COMPILER | tr -d "[:digit:]"`
     export WM_MACPORT_MPI_VERSION=`echo $WM_COMPILER | tr "[:upper:]" "[:lower:]"`
     export WM_MACPORT_VERSION=`echo $WM_MACPORT_MPI_VERSION | tr -d "[:alpha:]" | sed -e "s/\(.\)\(.\)/\1\.\2/"`
@@ -447,9 +448,15 @@ Darwin)
             export WM_CXX="g++-mp-$WM_MACPORT_VERSION"
             export WM_FC="gfortran-mp-$WM_MACPORT_VERSION"
         elif [ "$WM_BASE_COMPILER" == "Clang" ]
+        then
+            if [ "$WM_USE_MACPORT" == "1" ]
             then
                 export WM_CC="clang-mp-$WM_MACPORT_VERSION"
                 export WM_CXX="clang++-mp-$WM_MACPORT_VERSION"
+            else
+                export WM_CC="clang"
+                export WM_CXX="clang++"
+            fi
         # Seems like there is no Fortran-frontend for LLVM at thistime
         elif [ "$WM_BASE_COMPILER" == "Dragonegg" ]
         then

src/finiteVolume/fields/fvPatchFields/constraint/ggi/ggiFvPatchField.C

@@ -163,8 +163,7 @@ tmp<Field<Type> > ggiFvPatchField<Type>::patchNeighbourField() const
 
     // Get shadow face-cells and assemble shadow field
     // This is a patchInternalField of neighbour but access is inconvenient.
-    // Assemble by hand.
+    // Assemble by hand. HJ, 27/Sep/2011
-    // HJ, 27/Sep/2011
     const unallocLabelList& sfc = ggiPatch_.shadow().faceCells();
 
     Field<Type> sField(sfc.size());
@@ -180,13 +179,15 @@ tmp<Field<Type> > ggiFvPatchField<Type>::patchNeighbourField() const
     if (ggiPatch_.bridgeOverlap())
     {
         // Symmetry treatment used for overlap
-        vectorField nHat = this->patch().nf();
+        const vectorField nHat = this->patch().nf();
 
         // Use mirrored neighbour field for interpolation
         // HJ, 21/Jan/2009
-        Field<Type> bridgeField =
+        const Field<Type> bridgeField =
             transform(I - 2.0*sqr(nHat), this->patchInternalField());
 
+        // Note: bridging now takes into account fully uncovered and partially
+        // covered faces. VV, 18/Oct/2017.
         ggiPatch_.bridge(bridgeField, pnf);
     }
 
@@ -211,18 +212,8 @@ void ggiFvPatchField<Type>::initEvaluate
       + (1.0 - this->patch().weights())*this->patchNeighbourField()
     );
 
-    if (ggiPatch_.bridgeOverlap())
+    // Note: bridging and correction of partially overlapping faces taken into
-    {
+    // account in patchNeighbourField(). VV, 16/Oct/2017.
-        // Symmetry treatment used for overlap
-        vectorField nHat = this->patch().nf();
-
-        Field<Type> pif = this->patchInternalField();
-
-        Field<Type> bridgeField =
-            0.5*(pif + transform(I - 2.0*sqr(nHat), pif));
-
-        ggiPatch_.bridge(bridgeField, pf);
-    }
 
     Field<Type>::operator=(pf);
 }
@@ -266,6 +257,21 @@ void ggiFvPatchField<Type>::initInterfaceMatrixUpdate
 
     scalarField pnf = ggiPatch_.interpolate(sField);
 
+    if (ggiPatch_.bridgeOverlap())
+    {
+        // Note: will not work properly for types with rank > 0 (everything
+        // above scalar) if the symmetry plane is not aligned with one of the
+        // coordinate axes. VV, 18/Oct/2017.
+        const scalarField bridgeField =
+            transform
+            (
+                I - 2.0*sqr(this->patch().nf()),
+                ggiPatch_.patchInternalField(psiInternal)
+            );
+
+        ggiPatch_.bridge(bridgeField, pnf);
+    }
+
     // Multiply the field by coefficients and add into the result
     const unallocLabelList& fc = ggiPatch_.faceCells();
 
@@ -327,6 +333,21 @@ void ggiFvPatchField<Type>::initInterfaceMatrixUpdate
 
     Field<Type> pnf = ggiPatch_.interpolate(sField);
 
+    if (ggiPatch_.bridgeOverlap())
+    {
+        // Note: will not work properly for types with rank > 0 (everything
+        // above scalar) if the symmetry plane is not aligned with one of the
+        // coordinate axes. VV, 18/Oct/2017.
+        const Field<Type> bridgeField =
+            transform
+            (
+                I - 2.0*sqr(this->patch().nf()),
+                ggiPatch_.patchInternalField(psiInternal)
+            );
+
+        ggiPatch_.bridge(bridgeField, pnf);
+    }
+
     // Multiply neighbour field with coeffs and re-use pnf for result
     // of multiplication
     multiply(pnf, coeffs, pnf);

src/finiteVolume/fvMesh/fvPatches/constraint/ggi/ggiFvPatch.C

@@ -62,14 +62,14 @@ void Foam::ggiFvPatch::makeWeights(scalarField& w) const
     // HJ, 2/Aug/2007
     if (ggiPolyPatch_.master())
     {
-        vectorField n = nf();
+        const vectorField n = nf();
 
         // Note: mag in the dot-product.
         // For all valid meshes, the non-orthogonality will be less than
         // 90 deg and the dot-product will be positive.  For invalid
         // meshes (d & s <= 0), this will stabilise the calculation
         // but the result will be poor.  HJ, 24/Aug/2011
-        scalarField nfc =
+        const scalarField nfc =
             mag(n & (ggiPolyPatch_.reconFaceCellCentres() - Cf()));
 
         w = nfc/(mag(n & (Cf() - Cn())) + nfc);
@@ -78,7 +78,9 @@ void Foam::ggiFvPatch::makeWeights(scalarField& w) const
         {
             // Set overlap weights to 0.5 and use mirrored neighbour field
             // for interpolation.  HJ, 21/Jan/2009
-            bridge(scalarField(size(), 0.5), w);
+            const scalarField bridgedField(size(), 0.5);
+
+            bridge(bridgedField, w);
         }
     }
     else
@@ -87,7 +89,7 @@ void Foam::ggiFvPatch::makeWeights(scalarField& w) const
         scalarField masterWeights(shadow().size());
         shadow().makeWeights(masterWeights);
 
-        scalarField oneMinusW = 1 - masterWeights;
+        const scalarField oneMinusW = 1 - masterWeights;
 
         w = interpolate(oneMinusW);
 
@@ -95,7 +97,9 @@ void Foam::ggiFvPatch::makeWeights(scalarField& w) const
         {
             // Set overlap weights to 0.5 and use mirrored neighbour field
             // for interpolation.  HJ, 21/Jan/2009
-            bridge(scalarField(size(), 0.5), w);
+            const scalarField bridgedField(size(), 0.5);
+
+            bridge(bridgedField, w);
         }
     }
 }
@@ -107,16 +111,12 @@ void Foam::ggiFvPatch::makeDeltaCoeffs(scalarField& dc) const
     if (ggiPolyPatch_.master())
     {
         // Stabilised form for bad meshes.  HJ, 24/Aug/2011
-        vectorField d = delta();
+        const vectorField d = delta();
 
         dc = 1.0/max(nf() & d, 0.05*mag(d));
 
-        if (bridgeOverlap())
+        // Note: no need to bridge the overlap since delta already takes it into
-        {
+        // account. VV, 18/Oct/2017.
-            scalarField bridgeDeltas = nf() & fvPatch::delta();
-
-            bridge(bridgeDeltas, dc);
-        }
     }
     else
     {
@@ -126,7 +126,11 @@ void Foam::ggiFvPatch::makeDeltaCoeffs(scalarField& dc) const
 
         if (bridgeOverlap())
         {
-            scalarField bridgeDeltas = nf() & fvPatch::delta();
+            // Note: double the deltaCoeffs because this is symmetry treatment
+            // and fvPatch::deltaCoeffs() is cell to face inverse distance,
+            // while we need cell to "symmetry neighbour cell" distance.
+            // VV, 18/Oct/2017.
+            const scalarField bridgeDeltas = 2.0*fvPatch::deltaCoeffs();
 
             bridge(bridgeDeltas, dc);
         }
@@ -143,8 +147,8 @@ void Foam::ggiFvPatch::makeCorrVecs(vectorField& cv) const
     // Calculate correction vectors on coupled patches
     const scalarField& patchDeltaCoeffs = deltaCoeffs();
 
-    vectorField patchDeltas = delta();
+    const vectorField patchDeltas = delta();
-    vectorField n = nf();
+    const vectorField n = nf();
 
     // If non-orthogonality is over 90 deg, kill correction vector
     // HJ, 6/Jan/2011
@@ -161,7 +165,10 @@ Foam::tmp<Foam::vectorField> Foam::ggiFvPatch::delta() const
 
         if (bridgeOverlap())
         {
-            vectorField bridgeDeltas = Cf() - Cn();
+            // Note: double the deltas because this is symmetry treatment and
+            // fvPatch::delta() is cell to face distance, while we need cell to
+            // "symmetry neighbour cell" distance. VV, 18/Oct/2017.
+            const vectorField bridgeDeltas = 2.0*fvPatch::delta();
 
             bridge(bridgeDeltas, tDelta());
         }
@@ -177,7 +184,10 @@ Foam::tmp<Foam::vectorField> Foam::ggiFvPatch::delta() const
 
         if (bridgeOverlap())
         {
-            vectorField bridgeDeltas = Cf() - Cn();
+            // Note: double the deltas because this is symmetry treatment and
+            // fvPatch::delta() is cell to face distance, while we need cell to
+            // "symmetry neighbour cell" distance. VV, 18/Oct/2017.
+            const vectorField bridgeDeltas = 2.0*fvPatch::delta();
 
             bridge(bridgeDeltas, tDelta());
         }

src/foam/interpolations/GGIInterpolation/GGIInterpolate.C

@@ -97,13 +97,26 @@ void GGIInterpolation<MasterPatch, SlavePatch>::bridge
 (
     const Field<Type>& bridgeField,
     Field<Type>& ff,
-    const labelList& addr
+    const labelList& addr,
+    const labelList& partiallyCoveredAddr,
+    const scalarField& coveredFractions
 )
 {
+    // Fully uncovered faces
     forAll (addr, faceI)
     {
         ff[addr[faceI]] = bridgeField[addr[faceI]];
     }
+
+    // Loop through partially covered faces and correct them. Note the
+    // operator+= since we assume that the interpolation part is carried out
+    // before bridging (see e.g. ggiFvPatchField::patchNeighbourField()) using
+    // weights that do not sum up to 1
+    forAll (partiallyCoveredAddr, pcfI)
+    {
+        ff[partiallyCoveredAddr[pcfI]] +=
+            coveredFractions[pcfI]*bridgeField[partiallyCoveredAddr[pcfI]];
+    }
 }
 
 
@@ -114,7 +127,9 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridge
     const Field<Type>& bridgeField,
     Field<Type>& ff,
     const labelList& mask,
-    const labelList& uncoveredFaces
+    const labelList& uncoveredFaces,
+    const labelList& partiallyCoveredAddr,
+    const scalarField& coveredFractions
 )
 {
     // Note: tricky algorithm
@@ -131,7 +146,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridge
         const label faceI = uncoveredFaces[uncoI];
 
         // Search through the mask
-        for (; maskAddrI < mask.size(); maskAddrI++)
+        for (; maskAddrI < mask.size(); ++maskAddrI)
         {
             if (faceI == mask[maskAddrI])
             {
@@ -147,7 +162,38 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridge
                 // Go one back and check for next uncovered face
                 if (maskAddrI > 0)
                 {
-                    maskAddrI--;
+                    --maskAddrI;
+                }
+
+                break;
+            }
+        }
+    }
+
+    // Reset maskAddrI
+    maskAddrI = 0;
+
+    forAll (partiallyCoveredAddr, pcfI)
+    {
+        // Pick partially covered face
+        const label faceI = partiallyCoveredAddr[pcfI];
+
+        for (; maskAddrI < mask.size(); ++maskAddrI)
+        {
+            if (faceI == mask[maskAddrI])
+            {
+                // Found masked partially covered face
+                ff[maskAddrI] += coveredFractions[pcfI]*bridgeField[maskAddrI];
+
+                break;
+            }
+            else if (mask[maskAddrI] > faceI)
+            {
+                // Gone beyond my index: my face is not present in the mask
+                // Go one back and check for next uncovered face
+                if (maskAddrI > 0)
+                {
+                    --maskAddrI;
                 }
 
                 break;
@@ -511,7 +557,8 @@ void GGIInterpolation<MasterPatch, SlavePatch>::bridgeMaster
     if
     (
         bridgeField.size() != masterPatch_.size()
-     || ff.size() != masterPatch_.size())
+     || ff.size() != masterPatch_.size()
+    )
     {
         FatalErrorIn
         (
@@ -527,7 +574,14 @@ void GGIInterpolation<MasterPatch, SlavePatch>::bridgeMaster
             << abort(FatalError);
     }
 
-    bridge(bridgeField, ff, uncoveredMasterFaces());
+    bridge
+    (
+        bridgeField,
+        ff,
+        uncoveredMasterFaces(),
+        partiallyCoveredMasterFaces(),
+        masterFaceCoveredFractions()
+    );
 }
 
 
@@ -551,7 +605,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridgeMaster
             "    Field<Type>& ff,\n"
             "    const labelList& mask\n"
             ") const"
-        )   << "given field does not correspond to patch. Patch size: "
+        )   << "given field does not correspond to patch. Patch (mask) size: "
             << masterPatch_.size()
             << " bridge field size: " << bridgeField.size()
             << " field size: " << ff.size()
@@ -559,7 +613,15 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridgeMaster
             << abort(FatalError);
     }
 
-    maskedBridge(bridgeField, ff, mask, uncoveredMasterFaces());
+    maskedBridge
+    (
+        bridgeField,
+        ff,
+        mask,
+        uncoveredMasterFaces(),
+        partiallyCoveredMasterFaces(),
+        masterFaceCoveredFractions()
+    );
 }
 
 
@@ -592,7 +654,14 @@ void GGIInterpolation<MasterPatch, SlavePatch>::bridgeSlave
             << abort(FatalError);
     }
 
-    bridge(bridgeField, ff, uncoveredSlaveFaces());
+    bridge
+    (
+        bridgeField,
+        ff,
+        uncoveredSlaveFaces(),
+        partiallyCoveredSlaveFaces(),
+        slaveFaceCoveredFractions()
+    );
 }
 
 
@@ -616,7 +685,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridgeSlave
             "    Field<Type>& ff\n,"
             "    const labelList& mask\n"
             ") const"
-        )   << "given field does not correspond to patch. Patch size: "
+        )   << "given field does not correspond to patch. Patch (mask) size: "
             << slavePatch_.size()
             << " bridge field size: " << bridgeField.size()
             << " field size: " << ff.size()
@@ -624,12 +693,18 @@ void GGIInterpolation<MasterPatch, SlavePatch>::maskedBridgeSlave
             << abort(FatalError);
     }
 
-    maskedBridge(bridgeField, ff, mask, uncoveredSlaveFaces());
+    maskedBridge
+    (
+        bridgeField,
+        ff,
+        mask,
+        uncoveredSlaveFaces(),
+        partiallyCoveredSlaveFaces(),
+        slaveFaceCoveredFractions()
+    );
 }
 
 
-
-
 // * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
 
 } // End namespace Foam

src/foam/interpolations/GGIInterpolation/GGIInterpolation.C

@@ -104,7 +104,11 @@ void GGIInterpolation<MasterPatch, SlavePatch>::clearOut()
     deleteDemandDrivenData(slaveWeightsPtr_);
 
     deleteDemandDrivenData(uncoveredMasterAddrPtr_);
+    deleteDemandDrivenData(partiallyCoveredMasterAddrPtr_);
+    deleteDemandDrivenData(masterFaceCoveredFractionsPtr_);
     deleteDemandDrivenData(uncoveredSlaveAddrPtr_);
+    deleteDemandDrivenData(partiallyCoveredSlaveAddrPtr_);
+    deleteDemandDrivenData(slaveFaceCoveredFractionsPtr_);
 
     deleteDemandDrivenData(masterPointAddressingPtr_);
     deleteDemandDrivenData(masterPointWeightsPtr_);
@@ -155,7 +159,11 @@ GGIInterpolation<MasterPatch, SlavePatch>::GGIInterpolation
     slavePointWeightsPtr_(NULL),
     slavePointDistancePtr_(NULL),
     uncoveredMasterAddrPtr_(NULL),
-    uncoveredSlaveAddrPtr_(NULL)
+    partiallyCoveredMasterAddrPtr_(NULL),
+    masterFaceCoveredFractionsPtr_(NULL),
+    uncoveredSlaveAddrPtr_(NULL),
+    partiallyCoveredSlaveAddrPtr_(NULL),
+    slaveFaceCoveredFractionsPtr_(NULL)
 {
     // Check size of transform.  They should be equal to slave patch size
     // if the transform is not constant
@@ -256,6 +264,32 @@ GGIInterpolation<MasterPatch, SlavePatch>::uncoveredMasterFaces() const
 }
 
 
+template<class MasterPatch, class SlavePatch>
+const labelList&
+GGIInterpolation<MasterPatch, SlavePatch>::partiallyCoveredMasterFaces() const
+{
+    if (!partiallyCoveredMasterAddrPtr_)
+    {
+        calcAddressing();
+    }
+
+    return *partiallyCoveredMasterAddrPtr_;
+}
+
+
+template<class MasterPatch, class SlavePatch>
+const scalarField&
+GGIInterpolation<MasterPatch, SlavePatch>::masterFaceCoveredFractions() const
+{
+    if (!masterFaceCoveredFractionsPtr_)
+    {
+        calcAddressing();
+    }
+
+    return *masterFaceCoveredFractionsPtr_;
+}
+
+
 template<class MasterPatch, class SlavePatch>
 const labelList&
 GGIInterpolation<MasterPatch, SlavePatch>::uncoveredSlaveFaces() const
@@ -269,6 +303,32 @@ GGIInterpolation<MasterPatch, SlavePatch>::uncoveredSlaveFaces() const
 }
 
 
+template<class MasterPatch, class SlavePatch>
+const labelList&
+GGIInterpolation<MasterPatch, SlavePatch>::partiallyCoveredSlaveFaces() const
+{
+    if (!partiallyCoveredSlaveAddrPtr_)
+    {
+        calcAddressing();
+    }
+
+    return *partiallyCoveredSlaveAddrPtr_;
+}
+
+
+template<class MasterPatch, class SlavePatch>
+const scalarField&
+GGIInterpolation<MasterPatch, SlavePatch>::slaveFaceCoveredFractions() const
+{
+    if (!slaveFaceCoveredFractionsPtr_)
+    {
+        calcAddressing();
+    }
+
+    return *slaveFaceCoveredFractionsPtr_;
+}
+
+
 template<class MasterPatch, class SlavePatch>
 bool GGIInterpolation<MasterPatch, SlavePatch>::movePoints
 (

src/foam/interpolations/GGIInterpolation/GGIInterpolationTemplate.H

@@ -219,9 +219,30 @@ class GGIInterpolation
             //- List of uncovered master faces
             mutable labelList* uncoveredMasterAddrPtr_;
 
+            //- List of partially covered master faces. Contains faces with
+            //  weights between masterNonOverlapFaceTol_ and
+            //  uncoveredFaceAreaTol_. Used in bridging
+            mutable labelList* partiallyCoveredMasterAddrPtr_;
+
+            //- List of face fractions for partially covered master faces. Range
+            //  anywhere from 1 to uncoveredFaceAreaTol_ (e.g. 0.2 means
+            //  that the face area is covered by 20% on the other side)
+            mutable scalarField* masterFaceCoveredFractionsPtr_;
+
             //- List of uncovered slave faces
             mutable labelList* uncoveredSlaveAddrPtr_;
 
+            //- List of partially covered slave faces. Contains faces with
+            //  weights between masterNonOverlapFaceTol_ and
+            //  uncoveredFaceAreaTol_. Used in bridging
+            mutable labelList* partiallyCoveredSlaveAddrPtr_;
+
+            //- List of face fractions for partially covered slave faces. Range
+            //  anywhere from 1 to uncoveredFaceAreaTol_ (e.g. 0.2 means
+            //  that the face area is covered by 20% on the other side)
+            mutable scalarField* slaveFaceCoveredFractionsPtr_;
+
+
   // Private static data
 
         //- Facet area error tolerance
@@ -233,6 +254,9 @@ class GGIInterpolation
         //- Facet bound box extension factor
         static const debug::tolerancesSwitch faceBoundBoxExtendSpanFraction_;
 
+        //- Tolerance for uncovered face areas
+        static const debug::tolerancesSwitch uncoveredFaceAreaTol_;
+
        //- The next 3 attributes are parameters controlling the creation
        //  of an octree search engine for the GGI facets neighbourhood
        //  determination.
@@ -417,6 +441,14 @@ class GGIInterpolation
             const scalar& nonOverlapFaceTol
         ) const;
 
+        //- Calculate partially covered faces
+        void calcPartiallyCoveredFaces
+        (
+            const scalarListList& patchWeights,
+            const scalar& nonOverlapFaceTo,
+            const bool isMaster
+        ) const;
+
         //- Clear all geometry and addressing
         void clearOut();
 
@@ -451,7 +483,9 @@ class GGIInterpolation
         (
             const Field<Type>& bridgeField,
             Field<Type>& ff,
-            const labelList& addr
+            const labelList& addr,
+            const labelList& partiallyCoveredAddr,
+            const scalarField& coveredFractions
         );
 
         //- Bridge uncovered faces given addressing
@@ -462,7 +496,9 @@ class GGIInterpolation
             const Field<Type>& bridgeField,
             Field<Type>& ff,
             const labelList& mask,
-            const labelList& uncoveredFaces
+            const labelList& uncoveredFaces,
+            const labelList& partiallyCoveredAddr,
+            const scalarField& coveredFractions
         );
 
         //- Is a transform required?
@@ -533,9 +569,21 @@ public:
             //- Return reference to the master list of non-overlap faces
             const labelList& uncoveredMasterFaces() const;
 
+            //- Return reference to master list of partially covered faces
+            const labelList& partiallyCoveredMasterFaces() const;
+
+            //- Return covered fractions of partially covered master faces
+            const scalarField& masterFaceCoveredFractions() const;
+
             //- Return reference to the slave list of non-overlap faces
             const labelList& uncoveredSlaveFaces() const;
 
+            //- Return reference to slave list of partially covered faces
+            const labelList& partiallyCoveredSlaveFaces() const;
+
+            //- Return covered fractions of partially covered slave faces
+            const scalarField& slaveFaceCoveredFractions() const;
+
             //- Return reference to point addressing
             const List<labelPair>& masterPointAddr() const;
 
@@ -554,6 +602,7 @@ public:
             //- Return distance to intersection for patch points
             const scalarField& slavePointDistanceToIntersection() const;
 
+
     // Interpolation functions
 
         //- Interpolate from master to slave

src/foam/interpolations/GGIInterpolation/GGIInterpolationWeights.C

@@ -68,6 +68,16 @@ GGIInterpolation<MasterPatch, SlavePatch>::featureCosTol_
 );
 
 
+template<class MasterPatch, class SlavePatch>
+const Foam::debug::tolerancesSwitch
+GGIInterpolation<MasterPatch, SlavePatch>::uncoveredFaceAreaTol_
+(
+    "GGIUncoveredFaceAreaTol",
+    0.999,
+    "Fraction of face area mismatch (sum of weights) to consider a face "
+    "as uncovered, i.e. not to rescale weights."
+);
+
 // * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
 
 template<class MasterPatch, class SlavePatch>
@@ -80,7 +90,11 @@ void GGIInterpolation<MasterPatch, SlavePatch>::calcAddressing() const
      || slaveAddrPtr_
      || slaveWeightsPtr_
      || uncoveredMasterAddrPtr_
+     || partiallyCoveredMasterAddrPtr_
+     || masterFaceCoveredFractionsPtr_
      || uncoveredSlaveAddrPtr_
+     || partiallyCoveredSlaveAddrPtr_
+     || slaveFaceCoveredFractionsPtr_
     )
     {
         FatalErrorIn
@@ -431,7 +445,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::calcAddressing() const
                     );
 
                 // Fix: previously checked for VSMALL.
-                // HJ, 19/Sep2/106
+                // HJ, 19/Sep/2016
                 if (intersectionArea > intersectionTestArea)
                 {
                     // We compute the GGI weights based on this
@@ -555,7 +569,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::calcAddressing() const
         const labelList& curMa = ma[mfI];
         const scalarList& cursmaW = smaW[mfI];
 
-        // Current master face indes
+        // Current master face index
         const label faceMaster = mfI;
 
         forAll (curMa, mAI)
@@ -601,6 +615,29 @@ void GGIInterpolation<MasterPatch, SlavePatch>::calcAddressing() const
             findNonOverlappingFaces(saW, slaveNonOverlapFaceTol_)
         );
 
+    // Calculate master and slave partially covered addressing
+
+    // Note: This function allocates:
+    // 1. partiallyCoveredMasterAddrPtr_
+    // 2. masterFaceCoveredFractionsPtr_
+    calcPartiallyCoveredFaces
+    (
+        maW,
+        masterNonOverlapFaceTol_,
+        true // This is master
+    );
+
+    // Note: this function allocates:
+    // 1. partiallyCoveredSlaveAddrPtr_
+    // 2. slaveFaceCoveredFractionsPtr_
+    calcPartiallyCoveredFaces
+    (
+        saW,
+        slaveNonOverlapFaceTol_,
+        false // This is not master
+    );
+
+
     // Rescaling the weighting factors so they will sum up to 1.0
     // See the comment for the method ::rescaleWeightingFactors() for
     // more information.  By default, we always rescale.  But for some
@@ -608,7 +645,8 @@ void GGIInterpolation<MasterPatch, SlavePatch>::calcAddressing() const
     // then we need the brute values, so no rescaling in that
     // case. Hence the little flag rescaleGGIWeightingFactors_
 
-    // Not parallelised.  HJ, 27/Apr/2016
+    // Not parallelised.  HJ, 27/Apr/2016. Rescaling is not performed for
+    // partially overlapping faces for their correct treatment. VV, 16/Oct/2017.
     if (rescaleGGIWeightingFactors_)
     {
         rescaleWeightingFactors();
@@ -656,6 +694,35 @@ void GGIInterpolation<MasterPatch, SlavePatch>::rescaleWeightingFactors() const
     scalar sumMWC = 0;
     scalar curMWC = 0;
 
+    // Note: do not rescale weighting factors for partially covered faces
+    if (!partiallyCoveredMasterAddrPtr_ || !partiallyCoveredSlaveAddrPtr_)
+    {
+        FatalErrorIn
+        (
+            "void GGIInterpolation<MasterPatch, SlavePatch>::"
+            "rescaleWeightingFactors() const"
+        )   << "Master or slave partially covered faces are not calculated."
+            << abort(FatalError);
+    }
+
+    const labelList& partiallyCoveredMasterFaces =
+        *partiallyCoveredMasterAddrPtr_;
+    const labelList& partiallyCoveredSlaveFaces =
+        *partiallyCoveredSlaveAddrPtr_;
+
+    // Create a mask for partially covered master/slave faces
+    boolList masterPCMask(maW.size(), false);
+    boolList slavePCMask(saW.size(), false);
+
+    forAll (partiallyCoveredMasterFaces, pfmI)
+    {
+        masterPCMask[partiallyCoveredMasterFaces[pfmI]] = true;
+    }
+    forAll (partiallyCoveredSlaveFaces, pfsI)
+    {
+        slavePCMask[partiallyCoveredSlaveFaces[pfsI]] = true;
+    }
+
     // Rescaling the slave weights
     if (debug)
     {
@@ -679,7 +746,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::rescaleWeightingFactors() const
     {
         scalar slaveWeightSum = Foam::sum(saW[saWi]);
 
-        if (saW[saWi].size() > 0)
+        if (saW[saWi].size() > 0 && !slavePCMask[saWi])
         {
             saW[saWi] = saW[saWi]/slaveWeightSum;
 
@@ -696,7 +763,7 @@ void GGIInterpolation<MasterPatch, SlavePatch>::rescaleWeightingFactors() const
     {
         scalar masterWeightSum = Foam::sum(maW[maWi]);
 
-        if (maW[maWi].size() > 0)
+        if (maW[maWi].size() > 0 && !masterPCMask[maWi])
         {
             maW[maWi] = maW[maWi]/masterWeightSum;
 
@@ -767,6 +834,119 @@ GGIInterpolation<MasterPatch, SlavePatch>::findNonOverlappingFaces
     return tpatchFaceNonOverlapAddr;
 }
 
+
+template<class MasterPatch, class SlavePatch>
+void GGIInterpolation<MasterPatch, SlavePatch>::calcPartiallyCoveredFaces
+(
+    const scalarListList& patchWeights,
+    const scalar& nonOverlapFaceTol,
+    const bool isMaster
+) const
+{
+    // Sanity checks first
+    if
+    (
+        isMaster
+     && (partiallyCoveredMasterAddrPtr_ || masterFaceCoveredFractionsPtr_)
+    )
+    {
+        FatalErrorIn
+        (
+            "void GGIInterpolation<MasterPatch, SlavePatch>::"
+            "calcPartiallyCoveredFaces() const"
+        )   << "Already calculated master partially covered faces"
+            << abort(FatalError);
+    }
+
+    if
+    (
+        !isMaster
+     && (partiallyCoveredSlaveAddrPtr_ || slaveFaceCoveredFractionsPtr_)
+    )
+    {
+        FatalErrorIn
+        (
+            "void GGIInterpolation<MasterPatch, SlavePatch>::"
+            "calcPartiallyCoveredFaces() const"
+        )   << "Already calculated slave partially covered faces"
+            << abort(FatalError);
+    }
+
+    // Temporary storage
+    DynamicList<label, 64> patchFacePartialOverlap(patchWeights.size());
+    DynamicList<scalar, 64> uncoveredFaceFractions(patchWeights.size());
+
+    // Scan the list of patch weights and collect ones inbetween
+    // nonOverlapFaceTol and uncoveredFaceAreaTol_
+    forAll (patchWeights, paWi)
+    {
+        const scalar sumWeightsFace = sum(patchWeights[paWi]);
+
+        if
+        (
+            sumWeightsFace > nonOverlapFaceTol
+         && sumWeightsFace <= uncoveredFaceAreaTol_()
+        )
+        {
+            // This is considered partially overlapped face, store the index and
+            // the non-overlapping area (1 - sum of weights)
+            patchFacePartialOverlap.append(paWi);
+            uncoveredFaceFractions.append(1.0 - sumWeightsFace);
+        }
+    }
+
+    // Transfer the storage
+    if (isMaster)
+    {
+        // Allocate master side
+        partiallyCoveredMasterAddrPtr_ =
+            new labelList(patchFacePartialOverlap.xfer());
+        masterFaceCoveredFractionsPtr_ =
+            new scalarField(uncoveredFaceFractions.xfer());
+
+        if (debug)
+        {
+            InfoIn("GGIInterpolation::calcPartiallyCoveredFaces")
+                << "   : Found " << partiallyCoveredMasterAddrPtr_->size()
+                << " partially overlapping faces for master GGI patch" << endl;
+            
+            if (partiallyCoveredMasterAddrPtr_->size())
+            {
+                Info<< "Max coverage: "
+                    << max(*masterFaceCoveredFractionsPtr_)
+                    << ", min coverage: "
+                    << min(*masterFaceCoveredFractionsPtr_)
+                    << endl;
+            }
+        }
+    }
+    else
+    {
+        // Allocate slave side
+        partiallyCoveredSlaveAddrPtr_ =
+            new labelList(patchFacePartialOverlap.xfer());
+        slaveFaceCoveredFractionsPtr_ =
+            new scalarField(uncoveredFaceFractions.xfer());
+
+        if (debug)
+        {
+            InfoIn("GGIInterpolation::calcPartiallyCoveredFaces")
+                << "   : Found " << partiallyCoveredSlaveAddrPtr_->size()
+                << " partially overlapping faces for slave GGI patch" << endl;
+
+            if (partiallyCoveredSlaveAddrPtr_->size())
+            {
+                Info<< "Max coverage: "
+                    << max(*slaveFaceCoveredFractionsPtr_)
+                    << ", min coverage: "
+                    << min(*slaveFaceCoveredFractionsPtr_)
+                    << endl;
+            }
+        }
+    }
+}
+
+
 template<class FromPatch, class ToPatch>
 void GGIInterpolation<FromPatch, ToPatch>::
 calcMasterPointAddressing() const

src/foam/meshes/polyMesh/polyPatches/constraint/ggi/ggiPolyPatch.C

@@ -324,7 +324,7 @@ void Foam::ggiPolyPatch::calcLocalParallel() const
     {
         FatalErrorIn("void ggiPolyPatch::calcLocalParallel() const")
             << "Patch size is greater than zone size for GGI patch "
-            << name() << ".  This is not allowerd: "
+            << name() << ".  This is not allowed: "
             << "the face zone must contain all patch faces and be "
             << "global in parallel runs"
             << abort(FatalError);