Merge branch 'nextRelease' of git://git.code.sf.net/p/foam-extend/foam-extend-3.2 into nextRelease

CMakeLists.txt

@@ -39,6 +39,117 @@ cmake_minimum_required (VERSION 2.8)
 PROJECT(foam-extend-3.2)
 
 #-----------------------------------------------------------------------------
+# Utility functions
+#
+# GetHostName(var)
+#
+# Set the variable named ${var} to the host hostname
+#
+function(GetHostName var)
+    set( thisHostName "unknown")
+
+    if(CMAKE_HOST_WIN32)
+        execute_process(
+            COMMAND         hostname
+            OUTPUT_VARIABLE thisHostname
+        )
+    else()
+        execute_process(
+            COMMAND         hostname -f
+            OUTPUT_VARIABLE thisHostname
+        )
+    endif()
+    set(${var} ${thisHostname} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitStatus(status ecode)
+#
+# Get the git status for the local git repository of the source code
+# The variable named ${status} will get the git status
+# The variable named ${ecode} will get the command error code
+#
+function(GetGitStatus _status _ecode)
+    set( git_status "unknown")
+    set( git_ecode "1")
+
+    execute_process(
+      COMMAND           git status
+      WORKING_DIRECTORY ${FOAM_ROOT}
+      OUTPUT_VARIABLE   git_status
+      RESULT_VARIABLE   git_ecode
+      ERROR_QUIET
+    )
+    set(${_status} ${git_status} PARENT_SCOPE)
+    set(${_ecode} ${git_ecode} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitBranchName(var)
+#
+# Set the variable named ${var} to the git branch name of the source code
+#
+function(GetGitBranchName var)
+    set( retValue "unknown")
+
+    execute_process(
+        COMMAND         git branch --no-color
+        WORKING_DIRECTORY ${FOAM_ROOT}
+        OUTPUT_VARIABLE listOfGitBranches
+    )
+    # Create list of strings
+    string(REPLACE "\n" ";" listOfGitBranches ${listOfGitBranches})
+
+    # Iterate over list, find the string beginning with "* "
+    foreach(branch ${listOfGitBranches})
+        string(REGEX MATCH "\\* .*$" matchString ${branch})
+        string(LENGTH "${matchString}" lengthMatchString)
+	if(lengthMatchString GREATER 0)
+	    # We have  match. Cleanup and set retValue
+	    string(REPLACE "* " "" retValue ${matchString})
+        endif()
+    endforeach()
+
+    set(${var} ${retValue} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitRevNumber(var)
+#
+# Set the variable named ${var} to the git revision number of the source code
+#
+function(GetGitRevNumber var)
+    set( retValue "unknown")
+
+    execute_process(
+	COMMAND         git rev-parse --short=12 HEAD
+        WORKING_DIRECTORY ${FOAM_ROOT}
+        OUTPUT_VARIABLE git_rev_number
+    )
+
+    # Minimal check that we do have a valid string
+    string(LENGTH "${git_rev_number}" lengthString)
+    if(lengthString GREATER 0)
+        set(retValue ${git_rev_number})
+    endif()
+
+    set(${var} ${retValue} PARENT_SCOPE)
+endfunction()
+
+# CleanUpStringForCDash(var)
+#
+# Cleanup the variable named ${value} for characters not supported
+# for CDash identifiers. Return the modified value in retVar
+#
+function(CleanUpStringForCDash value retVar)
+    string(REPLACE "/" "_" value "${value}")
+    string(REPLACE " " "_" value ${value})
+    set(${retVar} ${value} PARENT_SCOPE)
+endfunction()
+
+#-----------------------------------------------------------------------------
+#
+#
 # Initialization of CTest specific variables
 #
 ## Run ctest in parallel if environment variable WM_NCOMPPROCS is set
@@ -57,13 +168,11 @@ IF (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
           SITENAME $ENV{CDASH_SUBMIT_LOCAL_HOST_ID}
           CACHE STRING "Name of the local site"
     )
-ELSE (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
+ELSE ()
     # Grab the hostname FQN; will be used for the sitename
-    execute_process(
+    GetHostName(SITENAME)
-        COMMAND         hostname -f
+
-        OUTPUT_VARIABLE SITENAME
+ENDIF()
-    )
-ENDIF  (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
 
 MESSAGE("Initializing the name of this local site to:  ${SITENAME}")
 
@@ -146,27 +255,15 @@ elseif(GIT_FOUND)
     message("The git command was found: ${GIT_EXECUTABLE}")
 
     # Check if the source code is under a valid git repository
-    execute_process(
+    GetGitStatus(GIT_STATUS GIT_ECODE)
-      COMMAND           git status
-      WORKING_DIRECTORY ${FOAM_ROOT}
-      OUTPUT_VARIABLE   GIT_STATUS
-      RESULT_VARIABLE   GIT_ECODE
-      ERROR_QUIET
-    )
 
     if(NOT GIT_ECODE)
-        # We have a valid git repository. Grab the branch and revision info.
+        # We have a valid git repository.
-        # Add to the build name
+	# Grab the branch and revision info. Add to the build name
-        exec_program(git
+	GetGitBranchName(GIT_BRANCH_NAME)
-          ARGS branch --no-color 2> /dev/null | grep '*'| awk '{print $2}'
-          OUTPUT_VARIABLE GIT_BRANCH_NAME
-          )
         message("Git branch: ${GIT_BRANCH_NAME}")
 
-        execute_process(
+	GetGitRevNumber(GIT_REV_NUMBER)
-          COMMAND         git rev-parse --short=12 HEAD
-          OUTPUT_VARIABLE GIT_REV_NUMBER
-          )
         message("Git revision: ${GIT_REV_NUMBER}")
 
         SET(BUILDNAME "${BUILDNAME}-git-branch=${GIT_BRANCH_NAME}")
@@ -216,13 +313,13 @@ endif()
 
 # Some last minute cleanup
 # Seems like no '/' or ' 'are allowed in the BUILDNAME or in the SITE name
-string(REPLACE "/" "_" BUILDNAME ${BUILDNAME})
+CleanUpStringForCDash(${BUILDNAME} BUILDNAME)
-string(REPLACE " " "_" BUILDNAME ${BUILDNAME})
+CleanUpStringForCDash(${SITE} SITE)
-string(REPLACE "/" "_" SITE ${SITE})
-string(REPLACE " " "_" SITE ${SITE})
 
 message("Build name: ${BUILDNAME}")
+message("Site name: ${SITE}")
 
+#
 # Build section
 #-----------------------------------------------------------------------------
 
@@ -282,10 +379,18 @@ IF(BUILD_TESTING)
     IF(RUN_FROM_ONE_TIMESTEP)
         # Modify the cases controlDict file in order to run for only one time step
         MESSAGE("${testRunTimeDirectory}: Modifying the controlDict files for running only one time step in directory: ${TEST_CASE_DIR}")
+	if(CMAKE_HOST_WIN32)
+          # Need to supply a bash shell to run the script under Windows
+          EXECUTE_PROCESS(
+            COMMAND bash -c "$ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForOneTimeStep.sh ${TEST_CASE_DIR}"
+            WORKING_DIRECTORY .
+            )
+	else()
           EXECUTE_PROCESS(
             COMMAND $ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForOneTimeStep.sh ${TEST_CASE_DIR}
             WORKING_DIRECTORY .
             )
+	endif()
     ENDIF(RUN_FROM_ONE_TIMESTEP)
 
 ENDIF(BUILD_TESTING)

CTestConfig.cmake

@@ -6,6 +6,10 @@
 ##   ENABLE_TESTING()
 ##   INCLUDE(CTest)
 
+# These settings will allow you to publish your dashboards results
+# on the foam-extend CDash service hosted on SourceForge.Net
+# See here: http://foam-extend.sourceforge.net/CDash/index.php
+#
 set(CTEST_PROJECT_NAME "foam-extend-3.2")
 set(CTEST_NIGHTLY_START_TIME "01:00:00 UTC")
 
@@ -13,3 +17,17 @@ set(CTEST_DROP_METHOD "http")
 set(CTEST_DROP_SITE "foam-extend.sourceforge.net")
 set(CTEST_DROP_LOCATION "/CDash/submit.php?project=foam-extend-3.2")
 set(CTEST_DROP_SITE_CDASH TRUE)
+
+# We can override those variables for local sites so you can use
+# your own site CDash service
+# This optional file will be located here:
+# $FOAM_SITE_DIR/etc/CTestConfig.site.cmake
+#
+include($ENV{FOAM_SITE_DIR}/etc/CTestConfig.site.cmake OPTIONAL)
+
+# We can override those variables from user space so you can use
+# your own personal CDash service
+# This optional file will be located here:
+# $WM_PROJECT_USER_DIR/etc/CTestConfig.user.cmake
+#
+include($ENV{WM_PROJECT_USER_DIR}/etc/CTestConfig.user.cmake OPTIONAL)

ThirdParty/AllMake.stage1

@@ -65,43 +65,43 @@ echo
 #
 [ ! -z "$WM_THIRD_PARTY_USE_GCC_445" ] && {
     echo "Building gmp-5.0.1 mpfr-3.0.1 gcc-4.4.5"
-    ( rpm_make -p gmp-5.0.1   -s gmp-5.0.1.spec  -u ftp://ftp.gnu.org/gnu/gmp/gmp-5.0.1.tar.gz                  )
+    ( rpm_make -p gmp-5.0.1   -s gmp-5.0.1.spec  -u http://ftpmirror.gnu.org/gmp/gmp-5.0.1.tar.gz                  )
-    ( rpm_make -p mpfr-3.0.1  -s mpfr-3.0.1.spec -u ftp://ftp.gnu.org/gnu/mpfr/mpfr-3.0.1.tar.gz                )
+    ( rpm_make -p mpfr-3.0.1  -s mpfr-3.0.1.spec -u http://ftpmirror.gnu.org/mpfr/mpfr-3.0.1.tar.gz                )
-    ( rpm_make -p gcc-4.4.5   -s gcc-4.4.5.spec  -u ftp://ftp.gnu.org/gnu/gcc/gcc-4.4.5/gcc-4.4.5.tar.gz        )
+    ( rpm_make -p gcc-4.4.5   -s gcc-4.4.5.spec  -u http://ftpmirror.gnu.org/gcc/gcc-4.4.5/gcc-4.4.5.tar.gz        )
 }
 
 # Gcc 4.5.1 and companion libraries
 #
 [ ! -z "$WM_THIRD_PARTY_USE_GCC_451" ] && {
     echo "Building gmp-5.0.1 mpfr-3.0.1 mpc-0.8.2 gcc-4.5.1"
-    ( rpm_make -p gmp-5.0.1  -s gmp-5.0.1.spec  -u ftp://ftp.gnu.org/gnu/gmp/gmp-5.0.1.tar.gz                  )
+    ( rpm_make -p gmp-5.0.1  -s gmp-5.0.1.spec  -u http://ftpmirror.gnu.org/gmp/gmp-5.0.1.tar.gz                  )
-    ( rpm_make -p mpfr-3.0.1 -s mpfr-3.0.1.spec -u ftp://ftp.gnu.org/gnu/mpfr/mpfr-3.0.1.tar.gz                )
+    ( rpm_make -p mpfr-3.0.1 -s mpfr-3.0.1.spec -u http://ftpmirror.gnu.org/mpfr/mpfr-3.0.1.tar.gz                )
     ( rpm_make -p mpc-0.8.2  -s mpc-0.8.2.spec  -u http://www.multiprecision.org/mpc/download/mpc-0.8.2.tar.gz )
-    ( rpm_make -p gcc-4.5.1  -s gcc-4.5.1.spec  -u ftp://ftp.gnu.org/gnu/gcc/gcc-4.5.1/gcc-4.5.1.tar.gz        )
+    ( rpm_make -p gcc-4.5.1  -s gcc-4.5.1.spec  -u http://ftpmirror.gnu.org/gcc/gcc-4.5.1/gcc-4.5.1.tar.gz        )
 }
 
 # Gcc 4.6.3 and companion libraries
 #
 [ ! -z "$WM_THIRD_PARTY_USE_GCC_463" ] && {
     echo "Building gmp-5.0.5 mpfr-3.1.0 mpc-0.9 gcc-4.6.3"
-    ( rpm_make -p gmp-5.0.5  -s gmp-5.0.5.spec  -u ftp://ftp.gnu.org/gnu/gmp/gmp-5.0.5.tar.bz2                 )
+    ( rpm_make -p gmp-5.0.5  -s gmp-5.0.5.spec  -u http://ftpmirror.gnu.org/gmp/gmp-5.0.5.tar.bz2                 )
-    ( rpm_make -p mpfr-3.1.0 -s mpfr-3.1.0.spec -u ftp://ftp.gnu.org/gnu/mpfr/mpfr-3.1.0.tar.gz                )
+    ( rpm_make -p mpfr-3.1.0 -s mpfr-3.1.0.spec -u http://ftpmirror.gnu.org/mpfr/mpfr-3.1.0.tar.gz                )
     ( rpm_make -p mpc-0.9    -s mpc-0.9.spec    -u http://www.multiprecision.org/mpc/download/mpc-0.9.tar.gz   )
-    ( rpm_make -p gcc-4.6.3  -s gcc-4.6.3.spec  -u ftp://ftp.gnu.org/gnu/gcc/gcc-4.6.3/gcc-4.6.3.tar.gz        )
+    ( rpm_make -p gcc-4.6.3  -s gcc-4.6.3.spec  -u http://ftpmirror.gnu.org/gcc/gcc-4.6.3/gcc-4.6.3.tar.gz        )
 }
 
 # Gcc 4.8.4 and companion libraries
 #
 [ ! -z "$WM_THIRD_PARTY_USE_GCC_484" ] && {
     echo "Building gcc-4.8.4"
-    ( rpm_make -p gcc-4.8.4  -s gcc-4.8.4.spec  -u ftp://ftp.gnu.org/gnu/gcc/gcc-4.8.4/gcc-4.8.4.tar.gz      )
+    ( rpm_make -p gcc-4.8.4  -s gcc-4.8.4.spec  -u http://ftpmirror.gnu.org/gcc/gcc-4.8.4/gcc-4.8.4.tar.gz      )
 }
 
 # Gcc 4.9.2 and companion libraries
 #
 [ ! -z "$WM_THIRD_PARTY_USE_GCC_492" ] && {
     echo "Building gcc-4.9.2"
-    ( rpm_make -p gcc-4.9.2  -s gcc-4.9.2.spec  -u ftp://ftp.gnu.org/gnu/gcc/gcc-4.9.2/gcc-4.9.2.tar.gz      )
+    ( rpm_make -p gcc-4.9.2  -s gcc-4.9.2.spec  -u http://ftpmirror.gnu.org/gcc/gcc-4.9.2/gcc-4.9.2.tar.gz      )
 }
 
 # Clang 3.6.0
@@ -123,7 +123,7 @@ echo
 [ ! -z "$WM_THIRD_PARTY_USE_M4_1416" ] && {
     echo "Building m4 1.4.16"
     # You need a recent version of m4 in order to compile a recent version of bison
-    ( rpm_make -p m4-1.4.16  -s m4-1.4.16.spec   -u http://ftp.gnu.org/gnu/m4/m4-1.4.16.tar.gz               )
+    ( rpm_make -p m4-1.4.16  -s m4-1.4.16.spec   -u http://ftpmirror.gnu.org/m4/m4-1.4.16.tar.gz               )
 }
 
 # bison 2.7
@@ -131,7 +131,7 @@ echo
 [ ! -z "$WM_THIRD_PARTY_USE_BISON_27" ] && {
     echo "Building bison 2.7"
     # You need a recent version of m4 in order to compile a recent version of bison
-    ( rpm_make -p bison-2.7 -s bison-2.7.spec -u http://ftp.gnu.org/gnu/bison/bison-2.7.tar.gz           )
+    ( rpm_make -p bison-2.7 -s bison-2.7.spec -u http://ftpmirror.gnu.org/bison/bison-2.7.tar.gz           )
 }
 
 # flex 2.5.35

ThirdParty/rpmBuild/SPECS/bison-2.4.3.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    http://ftp.gnu.org/gnu/bison
+URL:                    http://ftpmirror.gnu.org/bison
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/bison-2.7.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    http://ftp.gnu.org/gnu/bison
+URL:                    http://ftpmirror.gnu.org/bison
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.4.5.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.4.5
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.4.5
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.5.1.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.5.1
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.5.1
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.6.4.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.6.4
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.6.4
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.7.4.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.7.4
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.7.4
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.8.4.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.8.4
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.8.4
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gcc-4.9.2.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gcc/gcc-4.9.2
+URL:                    http://ftpmirror.gnu.org/gcc/gcc-4.9.2
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gmp-4.3.2.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gmp
+URL:                    http://ftpmirror.gnu.org/gmp
 Source: 		%url/%{name}-%{version}.tar.bz2
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gmp-5.0.1.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gmp
+URL:                    http://ftpmirror.gnu.org/gmp
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/gmp-5.1.2.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/gmp
+URL:                    http://ftpmirror.gnu.org/gmp
 Source: 		%url/%{name}-%{version}.tar.bz2
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/m4-1.4.16.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    http://ftp.gnu.org/gnu/m4
+URL:                    http://ftpmirror.gnu.org/m4
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/mpfr-3.0.0.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/mpfr
+URL:                    http://ftpmirror.gnu.org/mpfr
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

ThirdParty/rpmBuild/SPECS/mpfr-3.0.1.spec

@@ -72,7 +72,7 @@ License: 		Unkown
 Name: 			%{name}
 Version: 		%{version}
 Release: 		%{release}
-URL:                    ftp://ftp.gnu.org/gnu/mpfr
+URL:                    http://ftpmirror.gnu.org/mpfr
 Source: 		%url/%{name}-%{version}.tar.gz
 Prefix: 		%{_prefix}
 Group: 			Development/Tools

applications/solvers/immersedBoundary/icoDyMIbFoam/Make/files

@@ -0,0 +1,3 @@
+icoDyMIbFoam.C  
+
+EXE = $(FOAM_APPBIN)/icoDyMIbFoam

applications/solvers/immersedBoundary/icoDyMIbFoam/Make/options

@@ -0,0 +1,15 @@
+EXE_INC = \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude \
+    -I$(LIB_SRC)/dynamicMesh/dynamicFvMesh/lnInclude \
+    -I$(LIB_SRC)/dynamicMesh/dynamicMesh/lnInclude \
+    -I./lnInclude
+
+EXE_LIBS = \
+    -lfiniteVolume \
+    -lmeshTools \
+    -limmersedBoundary \
+    -ldynamicFvMesh \
+    -ldynamicMesh \
+    -llduSolvers

applications/solvers/immersedBoundary/icoDyMIbFoam/createFields.H

@@ -0,0 +1,52 @@
+    Info<< "Reading transportProperties\n" << endl;
+
+    IOdictionary transportProperties
+    (
+        IOobject
+        (
+            "transportProperties",
+            runTime.constant(),
+            mesh,
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    );
+
+    dimensionedScalar nu
+    (
+        transportProperties.lookup("nu")
+    );
+
+    Info<< "Reading field p\n" << endl;
+    volScalarField p
+    (
+        IOobject
+        (
+            "p",
+            runTime.timeName(),
+            mesh,
+            IOobject::MUST_READ,
+            IOobject::AUTO_WRITE
+        ),
+        mesh
+    );
+
+    Info<< "Reading field U\n" << endl;
+    volVectorField U
+    (
+        IOobject
+        (
+            "U",
+            runTime.timeName(),
+            mesh,
+            IOobject::MUST_READ,
+            IOobject::AUTO_WRITE
+        ),
+        mesh
+    );
+
+#   include "createPhi.H"
+
+    label pRefCell = 0;
+    scalar pRefValue = 0.0;
+    setRefCell(p, mesh.solutionDict().subDict("PIMPLE"), pRefCell, pRefValue);

applications/solvers/immersedBoundary/icoDyMIbFoam/icoDyMIbFoam.C

@@ -0,0 +1,141 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Application
+    icoDyMOversetFoam
+
+Description
+    Transient solver for incompressible, laminar flow of Newtonian fluids
+    with dynamic mesh and immersed boundary mesh support.
+
+Author
+    Hrvoje Jasak, Wikki Ltd.  All rights reserved
+
+\*---------------------------------------------------------------------------*/
+
+#include "fvCFD.H"
+#include "dynamicFvMesh.H"
+#include "immersedBoundaryFvPatch.H"
+#include "immersedBoundaryAdjustPhi.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+int main(int argc, char *argv[])
+{
+#   include "setRootCase.H"
+#   include "createTime.H"
+#   include "createDynamicFvMesh.H"
+#   include "createFields.H"
+#   include "initContinuityErrs.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+    Info<< "\nStarting time loop\n" << endl;
+
+    while (runTime.loop())
+    {
+        Info<< "Time = " << runTime.timeName() << nl << endl;
+
+        // Make the fluxes absolute
+        fvc::makeAbsolute(phi, U);
+
+        bool meshChanged = mesh.update();
+        reduce(meshChanged, orOp<bool>());
+        Info<< "Mesh update" << meshChanged << endl;
+#       include "createIbMasks.H"
+
+        // Make the fluxes relative to the mesh motion
+        fvc::makeRelative(phi, U);
+
+#       include "readPIMPLEControls.H"
+#       include "CourantNo.H"
+
+        // Pressure-velocity corrector
+        int oCorr = 0;
+        do
+        {
+            fvVectorMatrix UEqn
+            (
+                fvm::ddt(U)
+              + fvm::div(phi, U)
+              - fvm::laplacian(nu, U)
+            );
+
+            solve(UEqn == -fvc::grad(p));
+
+            // --- PISO loop
+            for (int corr = 0; corr < nCorr; corr++)
+            {
+                volScalarField rUA = 1.0/UEqn.A();
+
+                U = rUA*UEqn.H();
+                // Immersed boundary update
+                U.correctBoundaryConditions();
+
+                phi = faceIbMask*(fvc::interpolate(U) & mesh.Sf());
+
+                // Adjust immersed boundary fluxes
+                immersedBoundaryAdjustPhi(phi, U);
+                adjustPhi(phi, U, p);
+
+                for (int nonOrth = 0; nonOrth <= nNonOrthCorr; nonOrth++)
+                {
+                    fvScalarMatrix pEqn
+                    (
+                        fvm::laplacian(rUA, p) == fvc::div(phi)
+                    );
+
+                    pEqn.setReference(pRefCell, pRefValue);
+                    pEqn.solve();
+
+                    if (nonOrth == nNonOrthCorr)
+                    {
+                        phi -= pEqn.flux();
+                    }
+                }
+
+#               include "immersedBoundaryContinuityErrs.H"
+
+                // Make the fluxes relative to the mesh motion
+                fvc::makeRelative(phi, U);
+
+                U -= rUA*fvc::grad(p);
+                U.correctBoundaryConditions();
+            }
+        } while (++oCorr < nOuterCorr);
+
+        runTime.write();
+
+        Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
+            << "  ClockTime = " << runTime.elapsedClockTime() << " s"
+            << nl << endl;
+    }
+
+    Info<< "End\n" << endl;
+
+    return(0);
+}
+
+
+// ************************************************************************* //

doc/buildInstructions/Windows/README.txt

@@ -69,7 +69,7 @@ already have the correct tools installed on your system.
 
    using the command:
 
-   git clone --branch nextRelease git://git.code.sf.net/p/openfoam-extend/foam-extend-3.1 foam-extend-3.2
+   git clone --branch nextRelease git://git.code.sf.net/p/foam-extend/foam-extend-3.2
 
 5) Open a new MSYS shell and chdir to your foam-extend-3.2 source directory.
 

doc/testHarness/Allrun

@@ -0,0 +1,6 @@
+# Generate the ASCII version of testHarness.org
+pandoc testHarness.org -N -s -S -f org -t asciidoc -o testHarness.txt
+
+# Generate the Mediawiki version of testHarness.org
+pandoc testHarness.org -s -S -f org -t mediawiki -o testHarness.mediawiki
+

doc/testHarness/testHarness.org

@@ -0,0 +1,331 @@
+#                            -*- mode: org; -*-
+#
+#+TITLE:             *foam-extend-3.2: A guide to test harness*
+#+AUTHOR:                      Martin Beaudoin
+#+DATE:                        5 September 2015
+#+LINK: foam-extend  https://sourceforge.net/projects/openfoam-extend/
+#+OPTIONS: author:t
+#+OPTIONS: toc:2
+#+OPTIONS: ^:{}
+#+OPTIONS: _:{}
+
+###############################################################################
+
+* A guide to the foam-extend test harness
+This file is a guide to the foam-extend test harness.
+
+The test harness from foam-extend version 3.2 was used as a reference
+implementation for this documentation.
+
+The original version of this file is located at
+$WM\_PROJECT\_DIR/doc/testHarness/testHarness.org.
+
+A plain text version of this file is located at
+$WM\_PROJECT\_DIR/doc/testHarness/testHarness.txt.
+
+A MediaWiki version of this file is located at
+
+In case any converted versions (text, MediaWiki, etc.) of this file differ from
+the original testHarness.org file, the latter should always be considered the
+reference version. But we do appreciate your feedback and comments for improving
+this text.
+
+For instance, if you ever decide to improve the Mediawiki version only, please
+consider contributing your changes back to the testHarness.org file as
+well. Otherwise, your Mediawiki changes might get overwritten by an updated
+version of the .org reference file.
+
+** Introduction
+The foam-extend test harness scripts are based mainly on Kitware CMake/CTest
+utilities http://www.cmake.org/.
+
+In its current version, the test harness is designed for running the full suite
+of foam-extend tutorials, and report the fail/success results to a CDash Web
+service one can consult using a simple browser.
+
+The CDash Web service for foam-extend 3.2 is available here:
+http://foam-extend.sourceforge.net/CDash/index.php
+
+For a quick introduction of CMake/CTest, see here:
+http://www.cmake.org/Wiki/CMake/Testing_With_CTest
+
+For a more complete introduction to CMake and CTest, one can also refer to the
+Kitware book `Mastering CMake: A Cross-Platform Build System`
+http://www.kitware.com/products/books.php
+
+For more information on Kitware CDash, see here: http://www.cdash.org/
+
+The rest of this document will provide suficient information so you can run the
+foam-extend test harness on your own.
+
+** Files location and a short description
+The foam-extend test harness is currently built from the following files:
+
+- =$WM_PROJECT_DIR/CMakeLists.txt=  :: This is the main CMake file driving the
+     configuration of the test harness. When processed though the cmake
+     utility, all the necessary Makefiles and CTest scripts will get
+     generated.
+
+- =$WM_PROJECT_DIR/CTestConfig.cmake= :: This file contains the various variables
+     and definitions necessary to publish your test harness results over the
+     CDash Web service for foam-extend 3.2.
+
+- =$FOAM_SITE_DIR/etc/CTestConfig.site.cmake= :: This file allow you to override
+     the values from the main $WM\_PROJECT\_DIR/CTestConfig.cmake. This file
+     should be used if you are hosting your own site CDash Web
+     service.
+
+- =$WM_PROJECT_USER_DIR/etc/CTestConfig.user.cmake= :: This file allow you to
+     override the values from the main $WM\_PROJECT\_DIR/CTestConfig.cmake and the
+     site file $FOAM\_SITE\_DIR/etc/CTestConfig.site.cmake. This file should be
+     used if you are hosting your own user space personal CDash Web service.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/CMakeFiles/CMakeLists.txt= ::
+     This file is a copy of the main $WM\_PROJECT\_DIR/CMakeLists.txt file.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/CMakeFiles/CTestConfig.cmake.foam-extend= :: This file is a copy of the main $WM\_PROJECT\_DIR/CTestConfig.cmake file.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/CMakeFiles/Dashboard_Tutorials.cmake.in=  :: This file is a template for generating the file `ctest -S` file
+  $WM\_PROJECT\_DIR/testHarness/foam-extend/3.2/runDir/Dashboard\_Tutorials.cmake
+  CMake will take care of automatically generating the Dashboard\_Tutorials.cmake file.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/CMakeFiles/FOAM_Tutorials.cmake= :: This file will configure a copy the foam-extend tutorials for running
+  under the test harness. The copy will be made under
+  $WM\_PROJECT\_DIR/testHarness/foam-extend/3.2/runDir.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir/Allclean= :: Cleanup
+     script. Will remove all the automatically generated files and directories
+     for the test harness. Should be called prior to running the Allrun\_\* scripts.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir/Allrun_CMakeOnly= :: This
+     script will generate all the necessary files for running the test harness
+     on the foam-extend tutorials. One can then invoke `make help` to see all
+     the available make options.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir/Allrun_Experimental= ::
+     Same script as `Allrun\_CMakeOnly`, but will also call `make
+     Experimental`.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir/Allrun_Nightly= :: Same
+     script as `Allrun\_CMakeOnly`, but will also call `make Nightly`.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/scripts/AdditionalRunFunctions= :: Additional `bash` macros for the tutorial Allrun files.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/scripts/Allrun.default= ::
+     Default Allrun script for the tutorial when none are provided.
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/scripts/addMissingAllrunFileToTutorial.sh= :: Bash script for adding a default Allrun file to the tutorials that do not
+  have one. The test harness only run tutorials with an existing Allrun file
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/scripts/prepareCasesForOneTimeStep.sh= :: This script will modify the test cases system/controlDict in order for the
+  case to run for only 1 time step
+
+- =$WM_PROJECT_DIR/testHarness/foam-extend/3.2/scripts/prepareCasesForTestHarness.sh= :: This script will modify the test cases Allrun file so it can run properly
+  under the test harness.
+
+** Configuring your $WM\_PROJECT\_DIR/etc/prefs.sh file for the test harness
+The following environment variables are used for configuring the test
+harness. You should use your $WM\_PROJECT\_DIR/etc/prefs.sh file to initialize
+these variables.
+
+- =CDASH_SUBMIT_LOCAL_HOST_ID= :: System identifier for the FOAM CDash test harness
+  on foam-extend. By default, your system FQN/hostname will be used as the
+  system identifier when publishing your test harness results on the FOAM CDash
+  server on foam-extend. You can override your identifier using this environment
+  variable.
+
+- =CDASH_SCM_INFO= :: Buildname suffix for the FOAM CDash test harness on foam-extend.
+  By default, the git branch name and git revision number will be appended to the CDash build name.
+  Otherwise, for users not using git, or wanting to provide additionnal
+  information, simply initialize the CDASH\_SCM\_INFO with the proper information.
+
+- =WM_NCOMPPROCS= :: Specify the number of cores to use for the parallel execution
+  of the test harness.
+
+- =FOAM_TUTORIALS= :: Directory where the original test cases are located. For
+  foam-extend, this would be by default $WM\_PROJECT\_DIR/tutorials.
+
+** The main dashboards : Experimental, Nightly and Continuous
+The result of a test run, reformatted for easy review, is called a
+`dashboard`. A dashboard can be submitted to a central server, like CDash. Once
+properly configured, the test harness will offer 3 main dashboards.
+
+- =Experimental= :: Will test the current state of the project. An experimental
+     submission can be performed at any time, usually interactively from the
+     current working copy of a developer.
+- =Nightly= :: Is similar to Experimental, except that the source tree will be set
+     to the state it was in at a specific nightly time. This ensures that all
+     `nightly` submissions correspond to the state of the project at the same
+     point in time. `Nightly` builds are usually done automatically at a preset
+     time of day. Nightly build will also update your source code to the latest
+     available revision. So it is best not to run a Nightly dashboard on source
+     code that is not yet committed.
+- =Continuous= :: Means that the source tree is updated to the latest revision,
+     and a build / test cycle is performed only if any files were actually
+     updated. Like `Nightly` builds, `Continuous` ones are usually done
+     automatically and repeatedly in intervals.
+
+There are also `intermediary dashboards` that allow you to select a specific
+test harness intermediary step. The command `make help` will show you that list:
+
+#+BEGIN_SRC
+... ContinuousBuild
+... ContinuousConfigure
+... ContinuousCoverage
+... ContinuousMemCheck
+... ContinuousStart
+... ContinuousSubmit
+... ContinuousTest
+... ContinuousUpdate
+... ExperimentalBuild
+... ExperimentalConfigure
+... ExperimentalCoverage
+... ExperimentalMemCheck
+... ExperimentalStart
+... ExperimentalSubmit
+... ExperimentalTest
+... ExperimentalUpdate
+... NightlyBuild
+... NightlyConfigure
+... NightlyCoverage
+... NightlyMemCheck
+... NightlyMemoryCheck
+... NightlyStart
+... NightlySubmit
+... NightlyTest
+... NightlyUpdate
+#+END_SRC
+
+- Note :: For foam-extend, the MemCheck and Coverage dashboards are not supported.
+
+** Running the test harness
+   Running the test harness is pretty simple:
+
+   These commands will configure and run the `Experimental` version of the test harness:
+
+#+BEGIN_SRC
+   cd $WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir
+   ./Allclean
+   ./Allrun_Experimental
+#+END_SRC
+
+   To run the `Nightly` version of the test harness:
+
+#+BEGIN_SRC
+   cd $WM_PROJECT_DIR/testHarness/foam-extend/3.2/runDir
+   ./Allclean
+   ./Allrun_Nightly
+#+END_SRC
+
+   To see the full range of available options, run the command:
+
+#+BEGIN_SRC
+make help
+#+END_SRC
+
+** Selecting a subset of test cases to run
+Instead of using the `make` command to run the test harness, one can also use
+command `ctest`. The commmand `ctest` offers additionnal options to select or limit the number
+of tests to run.
+
+The following command will provide all the available options for ctest:
+
+#+BEGIN_SRC
+ctest -N
+#+END_SRC
+
+Here is a list of useful ctest options:
+
+- =ctest -N= :: this command will list the available tests by their name and
+     number. By default, all the tests are run in succession following the
+     numerical order shown.
+
+- =ctest -R <regex>= :: run all the tests whose name are matching the supplied
+     regular expression. For instance, to run all the tests related to cfMesh,
+     one can use the following command: `ctest -R cfMesh`
+
+- =ctest -E <regex>= :: run all the tests, but exclude the ones whose name is
+     matching the supplied regular expression. For instance, to run all the
+     tests except those for cfMesh, one can use the following command: `ctest -E
+     cfMesh`
+
+- =ctest -I [Start,End,Stride,test#,test#]=  :: run individual tests by
+     number. `ctest -I 3,5` will run test 3, 4 and 5. `ctest -I 4,4,,4,7,13`
+     will run tests 4, 7 and 13.
+
+- =ctest -D dashboard= :: run a specific dashboard test. For example, the command
+     `make Experimental` can be replaced by the following suite of ctest
+     commands:
+#+BEGIN_SRC
+ctest -D ExperimentalStart
+ctest -D ExperimentalConfigure
+ctest -D ExperimentalBuild
+ctest -D ExperimentalTest
+ctest -D ExperimentalSubmit
+#+END_SRC
+
+Here is a more complete example where we will configure, build, test and submit the test
+harness results, but only for the incompressible tutorials:
+#+BEGIN_SRC
+ctest -D Experimental -R incompressible
+#+END_SRC
+
+
+** Browsing the CDash service
+
+   The results of the test harness run will be published on the CDash dashboard on foam-extend.
+
+   To see your results:
+   URL      : http://foam-extend.sourceforge.net/CDash/index.php?project=foam-extend-3.2
+
+   On this interactive Web site, one can then point and click various buttons
+   and menus to explore the various reports uploaded from your test harness runs.
+
+** Configuring the test harness for using your own site or personal CDash service
+The foam-extend source code comes with a set pre-configured parameters for
+uploading your dashboards results on the main project CDash server. One can also
+choose to host their own CDash service, either as a site service, or as a
+personnal service running in your own user space. Your CDash administrator can
+generate a file similar to $WM\_PROJECT\_DIR/CTestConfig.cmake where all the
+necessary parameters for connecting to your local service are specified.
+
+In order to use your site CDash service, simply copy your site CTestConfig.cmake
+file to $FOAM\_SITE\_DIR/etc/CTestConfig.site.cmake
+
+In order to use your personnal CDash service, simply copy your personnal CTestConfig.cmake
+file to $WM\_PROJECT\_USER\_DIR/etc/CTestConfig.user.cmake
+
+As usual, your site configuration will override the default parameters from the
+main configuration file $WM\_PROJECT\_DIR/CTestConfig.cmake.
+
+Likewise, your personnal configuration will override the default parameters from the
+main configuration file $WM\_PROJECT\_DIR/CTestConfig.cmake and the default
+parameters from the site file $FOAM\_SITE\_DIR/etc/CTestConfig.site.cmake.
+
+
+** New features for the test harness (foam-extend 3.2):
+   - =Running the test harness in parallel= :: It is now possible to run the test
+        harness in parallel over a single node or computer. The environment
+        variable WM\_NCOMPPROCS will specify the number of cores to use for
+        running the test harness. For `n` cores specified, `n` tutorials will
+        be running in parallel on your computer. Since all the tests will
+        still run on the same computer, make sure you have enough ressources to
+        run `n` tutorials in parallel. Depending on the number of cores
+        available, one might have to tweak some of the shell `limits`
+        values. The command `ulimit -a` will show you the actual limits values
+        imposed on your shell. Some limit values like `open files` (ulimit -n)
+        or `max user processes` (ulimit -u) might need to be adjusted to some
+        higher values. In doubt, consult with your local sysadmin.
+
+** Notes
+The MediaWiki version of this file was generated using the following command:
+
+#+BEGIN_SRC
+   pandoc testHarness.org -s -S -f org -t mediawiki -o testHarness.mediawiki
+#+END_SRC
+
+The ASCII version of this file was generated using the following command:
+
+#+BEGIN_SRC
+   pandoc testHarness.org -N -s -S -f org -t asciidoc -o testHarness.txt
+#+END_SRC

etc/settings.csh

@@ -52,8 +52,9 @@ setenv FOAM_LIBBIN $WM_PROJECT_DIR/lib/$WM_OPTIONS
 setenv FOAM_SRC $WM_PROJECT_DIR/src
 
 # shared site configuration - similar naming convention as ~FOAM expansion
-setenv FOAM_SITE_APPBIN $WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION/bin/$WM_OPTIONS
+setenv FOAM_SITE_DIR $WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION
-setenv FOAM_SITE_LIBBIN $WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION/lib/$WM_OPTIONS
+setenv FOAM_SITE_APPBIN $FOAM_SITE_DIR/bin/$WM_OPTIONS
+setenv FOAM_SITE_LIBBIN $FOAM_SITE_DIR/lib/$WM_OPTIONS
 
 # user configuration
 setenv FOAM_USER_APPBIN $WM_PROJECT_USER_DIR/applications/bin/$WM_OPTIONS
@@ -64,6 +65,7 @@ setenv FOAM_TUTORIALS $WM_PROJECT_DIR/tutorials
 setenv FOAM_UTILITIES $FOAM_APP/utilities
 setenv FOAM_SOLVERS $FOAM_APP/solvers
 setenv FOAM_RUN $WM_PROJECT_USER_DIR/run
+setenv FOAM_TEST_HARNESS_DIR $WM_PROJECT_DIR/testHarness/foam-extend/$WM_PROJECT_VERSION
 
 # add FOAM scripts and wmake to the path
 set path=($WM_DIR $WM_PROJECT_DIR/bin $path)

etc/settings.sh

@@ -90,8 +90,9 @@ export FOAM_LIBBIN=$WM_PROJECT_DIR/lib/$WM_OPTIONS
 export FOAM_SRC=$WM_PROJECT_DIR/src
 
 # shared site configuration - similar naming convention as ~FOAM expansion
-export FOAM_SITE_APPBIN=$WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION/bin/$WM_OPTIONS
+export FOAM_SITE_DIR=$WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION
-export FOAM_SITE_LIBBIN=$WM_PROJECT_INST_DIR/site/$WM_PROJECT_VERSION/lib/$WM_OPTIONS
+export FOAM_SITE_APPBIN=$FOAM_SITE_DIR/bin/$WM_OPTIONS
+export FOAM_SITE_LIBBIN=$FOAM_SITE_DIR/lib/$WM_OPTIONS
 
 # user configuration
 export FOAM_USER_APPBIN=$WM_PROJECT_USER_DIR/applications/bin/$WM_OPTIONS
@@ -102,6 +103,7 @@ export FOAM_TUTORIALS=$WM_PROJECT_DIR/tutorials
 export FOAM_UTILITIES=$FOAM_APP/utilities
 export FOAM_SOLVERS=$FOAM_APP/solvers
 export FOAM_RUN=$WM_PROJECT_USER_DIR/run
+export FOAM_TEST_HARNESS_DIR=$WM_PROJECT_DIR/testHarness/foam-extend/$WM_PROJECT_VERSION
 
 # add FOAM scripts and wmake to the path
 export PATH=$WM_DIR:$WM_PROJECT_DIR/bin:$PATH

src/Allwmake

@@ -77,6 +77,7 @@ wmake libso dbns
 wmake libso immersedBoundary/immersedBoundary
 wmake libso immersedBoundary/immersedBoundaryTurbulence
 wmake libso immersedBoundary/immersedBoundaryForce
+wmake libso immersedBoundary/immersedBoundaryDynamicMesh
 
 ( cd cudaSolvers ; ./Allwmake )
 

src/immersedBoundary/immersedBoundaryDynamicMesh/Make/files

@@ -0,0 +1,4 @@
+movingImmersedBoundary/movingImmersedBoundary.C
+immersedBoundarySolidBodyMotionFvMesh/immersedBoundarySolidBodyMotionFvMesh.C
+
+LIB = $(FOAM_LIBBIN)/libimmersedBoundaryDynamicFvMesh

src/immersedBoundary/immersedBoundaryDynamicMesh/Make/options

@@ -0,0 +1,18 @@
+EXE_INC = \
+    -I$(LIB_SRC)/immersedBoundary/immersedBoundary/lnInclude \
+    -I$(LIB_SRC)/finiteVolume/lnInclude \
+    -I$(LIB_SRC)/meshTools/lnInclude \
+    -I$(LIB_SRC)/surfMesh/lnInclude \
+    -I$(LIB_SRC)/sampling/lnInclude \
+    -I$(LIB_SRC)/dynamicMesh/dynamicFvMesh/lnInclude \
+    -I$(LIB_SRC)/dynamicMesh/meshMotion/solidBodyMotion/lnInclude \
+
+EXE_LIBS = \
+    -limmersedBoundary \
+    -lfiniteVolume \
+    -lmeshTools \
+    -lsurfMesh \
+    -lsampling \
+    -ldynamicMesh \
+    -ldynamicFvMesh \
+    -lsolidBodyMotion

src/immersedBoundary/immersedBoundaryDynamicMesh/immersedBoundarySolidBodyMotionFvMesh/immersedBoundarySolidBodyMotionFvMesh.C

@@ -0,0 +1,119 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+\*---------------------------------------------------------------------------*/
+
+#include "immersedBoundarySolidBodyMotionFvMesh.H"
+#include "addToRunTimeSelectionTable.H"
+#include "volFields.H"
+
+// * * * * * * * * * * * * * * Static Data Members * * * * * * * * * * * * * //
+
+namespace Foam
+{
+    defineTypeNameAndDebug(immersedBoundarySolidBodyMotionFvMesh, 0);
+    addToRunTimeSelectionTable
+    (
+        dynamicFvMesh,
+        immersedBoundarySolidBodyMotionFvMesh,
+        IOobject
+    );
+}
+
+
+// * * * * * * * * * * * * * Private Member Functions  * * * * * * * * * * * //
+
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+Foam::immersedBoundarySolidBodyMotionFvMesh::
+immersedBoundarySolidBodyMotionFvMesh
+(
+    const IOobject& io
+)
+:
+    dynamicFvMesh(io),
+    dynamicMeshCoeffs_
+    (
+        IOdictionary
+        (
+            IOobject
+            (
+                "dynamicMeshDict",
+                time().constant(),
+                *this,
+                IOobject::MUST_READ,
+                IOobject::NO_WRITE
+            )
+        ).subDict(typeName + "Coeffs")
+    ),
+    ibMotions_()
+{
+    // Read motion function for all regions
+    PtrList<entry> motionDicts(dynamicMeshCoeffs_.lookup("motionFunctions"));
+
+    ibMotions_.setSize(motionDicts.size());
+
+    forAll (motionDicts, mI)
+    {
+        ibMotions_.set
+        (
+            mI,
+            new movingImmersedBoundary
+            (
+                motionDicts[mI].keyword(),
+                *this,
+                motionDicts[mI].dict()
+            )
+        );
+    }
+}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::immersedBoundarySolidBodyMotionFvMesh::
+~immersedBoundarySolidBodyMotionFvMesh()
+{}
+
+
+// * * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * //
+
+bool Foam::immersedBoundarySolidBodyMotionFvMesh::update()
+{
+    forAll (ibMotions_, ibI)
+    {
+        ibMotions_[ibI].movePoints();
+    }
+
+    // Force flux and addressing recalculation as in topo change
+    pointField newAllPoints = allPoints();
+
+    movePoints(newAllPoints);
+
+    return true;
+}
+
+
+// ************************************************************************* //

src/immersedBoundary/immersedBoundaryDynamicMesh/immersedBoundarySolidBodyMotionFvMesh/immersedBoundarySolidBodyMotionFvMesh.H

@@ -0,0 +1,112 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | OpenFOAM: The Open Source CFD Toolbox
+   \\    /   O peration     |
+    \\  /    A nd           | Copyright held by original author
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of OpenFOAM.
+
+    OpenFOAM is free software; you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation; either version 2 of the License, or (at your
+    option) any later version.
+
+    OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
+    ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
+    FITNESS FOR A PARTICULAR PURPOSE.  See the GNU General Public License
+    for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with OpenFOAM; if not, write to the Free Software Foundation,
+    Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+
+Class
+    Foam::immersedBoundarySolidBodyMotionFvMesh
+
+Description
+    Solid-body motion of the immersed boundary mesh specified by a
+    run-time selectable motion function for each immersed boundary surface
+
+SourceFiles
+    immersedBoundarySolidBodyMotionFvMesh.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef immersedBoundarySolidBodyMotionFvMesh_H
+#define immersedBoundarySolidBodyMotionFvMesh_H
+
+#include "dynamicFvMesh.H"
+#include "dictionary.H"
+#include "movingImmersedBoundary.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+           Class immersedBoundarySolidBodyMotionFvMesh Declaration
+\*---------------------------------------------------------------------------*/
+
+class immersedBoundarySolidBodyMotionFvMesh
+:
+    public dynamicFvMesh
+{
+    // Private data
+
+        //- Dictionary of motion control parameters
+        dictionary dynamicMeshCoeffs_;
+
+        //- Immersed boundary motion control function
+        PtrList<movingImmersedBoundary> ibMotions_;
+
+
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        immersedBoundarySolidBodyMotionFvMesh
+        (
+            const immersedBoundarySolidBodyMotionFvMesh&
+        );
+
+        //- Disallow default bitwise assignment
+        void operator=
+        (
+            const immersedBoundarySolidBodyMotionFvMesh&
+        );
+
+
+public:
+
+    //- Runtime type information
+    TypeName("immersedBoundarySolidBodyMotionFvMesh");
+
+
+    // Constructors
+
+        //- Construct from IOobject
+        explicit immersedBoundarySolidBodyMotionFvMesh(const IOobject& io);
+
+
+    // Destructor
+    virtual ~immersedBoundarySolidBodyMotionFvMesh();
+
+
+    // Member Functions
+
+        //- Update the mesh for both mesh motion and topology change
+        virtual bool update();
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

src/immersedBoundary/immersedBoundaryDynamicMesh/movingImmersedBoundary/movingImmersedBoundary.C

@@ -0,0 +1,98 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | foam-extend: Open Source CFD
+   \\    /   O peration     |
+    \\  /    A nd           | For copyright notice see file Copyright
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of foam-extend.
+
+    foam-extend is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation, either version 3 of the License, or (at your
+    option) any later version.
+
+    foam-extend is distributed in the hope that it will be useful, but
+    WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+    General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
+
+\*---------------------------------------------------------------------------*/
+
+#include "movingImmersedBoundary.H"
+#include "immersedBoundaryPolyPatch.H"
+#include "transformField.H"
+
+// * * * * * * * * * * * * * * * * Constructors  * * * * * * * * * * * * * * //
+
+Foam::movingImmersedBoundary::movingImmersedBoundary
+(
+    const word& name,
+    const fvMesh& mesh,
+    const dictionary& dict
+)
+:
+    name_(name),
+    mesh_(mesh),
+    sbmfPtr_(solidBodyMotionFunction::New(dict, mesh.time())),
+    refIbSurface_
+    (
+        IOobject
+        (
+            name  + ".ftr",
+            mesh.time().constant(),      // instance
+            "triSurface",                // local
+            mesh,                        // registry
+            IOobject::MUST_READ,
+            IOobject::NO_WRITE
+        )
+    )
+{}
+
+
+// * * * * * * * * * * * * * * * * Destructor  * * * * * * * * * * * * * * * //
+
+Foam::movingImmersedBoundary::~movingImmersedBoundary()
+{}
+
+
+// * * * * * * * * * * * * * * Member Functions  * * * * * * * * * * * * * * //
+
+void Foam::movingImmersedBoundary::movePoints() const
+{
+    // Get ibMesh from patch
+    const label patchID = mesh().boundaryMesh().findPatchID(name());
+
+    if (patchID < 0)
+    {
+        FatalErrorIn
+        (
+            "void movingImmersedBoundary::movePoints() const"
+        )   << "Patch " << name() << " not found.  Available patch names: "
+            << mesh().boundaryMesh().names()
+            << abort(FatalError);
+    }
+
+    const immersedBoundaryPolyPatch& cibPatch =
+        refCast<const immersedBoundaryPolyPatch>
+        (
+            mesh().boundaryMesh()[patchID]
+        );
+
+    // Get non-const reference to patch
+    immersedBoundaryPolyPatch& ibPatch =
+        const_cast<immersedBoundaryPolyPatch&>(cibPatch);
+
+    // Move points
+    ibPatch.moveTriSurfacePoints
+    (
+        transform(sbmfPtr_->transformation(), refIbSurface_.points())
+    );
+}
+
+
+// ************************************************************************* //

src/immersedBoundary/immersedBoundaryDynamicMesh/movingImmersedBoundary/movingImmersedBoundary.H

@@ -0,0 +1,121 @@
+/*---------------------------------------------------------------------------*\
+  =========                 |
+  \\      /  F ield         | foam-extend: Open Source CFD
+   \\    /   O peration     |
+    \\  /    A nd           | For copyright notice see file Copyright
+     \\/     M anipulation  |
+-------------------------------------------------------------------------------
+License
+    This file is part of foam-extend.
+
+    foam-extend is free software: you can redistribute it and/or modify it
+    under the terms of the GNU General Public License as published by the
+    Free Software Foundation, either version 3 of the License, or (at your
+    option) any later version.
+
+    foam-extend is distributed in the hope that it will be useful, but
+    WITHOUT ANY WARRANTY; without even the implied warranty of
+    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+    General Public License for more details.
+
+    You should have received a copy of the GNU General Public License
+    along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
+
+Class
+    Foam::movingImmersedBoundary
+
+Description
+    Moving immesed boundary.  Motion is prescribed using a solid body motion
+    function.
+
+SourceFiles
+    movingImmersedBoundary.C
+
+\*---------------------------------------------------------------------------*/
+
+#ifndef movingImmersedBoundary_H
+#define movingImmersedBoundary_H
+
+#include "fvMesh.H"
+#include "solidBodyMotionFunction.H"
+#include "triSurfaceMesh.H"
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+namespace Foam
+{
+
+/*---------------------------------------------------------------------------*\
+                    Class movingImmersedBoundary Declaration
+\*---------------------------------------------------------------------------*/
+
+class movingImmersedBoundary
+{
+    // Private data
+
+        //- Patch name
+        const word name_;
+
+        //- Mesh reference
+        const fvMesh& mesh_;
+
+        //- Overset region motion control function
+        autoPtr<solidBodyMotionFunction> sbmfPtr_;
+
+        //- Reference tri surface mesh position
+        triSurfaceMesh refIbSurface_;
+
+
+    // Private Member Functions
+
+        //- Disallow default bitwise copy construct
+        movingImmersedBoundary(const movingImmersedBoundary&);
+
+        //- Disallow default bitwise assignment
+        void operator=(const movingImmersedBoundary&);
+
+
+public:
+
+    // Constructors
+
+        //- Construct from dictionary
+        movingImmersedBoundary
+        (
+            const word& name,
+            const fvMesh& mesh,
+            const dictionary& dict
+        );
+
+
+    //- Destructor
+    ~movingImmersedBoundary();
+
+    // Member Functions
+
+        //- Return name
+        const word& name() const
+        {
+            return name_;
+        }
+
+        //- Return mesh
+        const fvMesh& mesh() const
+        {
+            return mesh_;
+        }
+
+        //- Move immersed boundary patch points
+        void movePoints() const;
+};
+
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+} // End namespace Foam
+
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+#endif
+
+// ************************************************************************* //

testHarness/foam-extend/3.2/CMakeFiles/CMakeLists.txt

@@ -39,6 +39,117 @@ cmake_minimum_required (VERSION 2.8)
 PROJECT(foam-extend-3.2)
 
 #-----------------------------------------------------------------------------
+# Utility functions
+#
+# GetHostName(var)
+#
+# Set the variable named ${var} to the host hostname
+#
+function(GetHostName var)
+    set( thisHostName "unknown")
+
+    if(CMAKE_HOST_WIN32)
+        execute_process(
+            COMMAND         hostname
+            OUTPUT_VARIABLE thisHostname
+        )
+    else()
+        execute_process(
+            COMMAND         hostname -f
+            OUTPUT_VARIABLE thisHostname
+        )
+    endif()
+    set(${var} ${thisHostname} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitStatus(status ecode)
+#
+# Get the git status for the local git repository of the source code
+# The variable named ${status} will get the git status
+# The variable named ${ecode} will get the command error code
+#
+function(GetGitStatus _status _ecode)
+    set( git_status "unknown")
+    set( git_ecode "1")
+
+    execute_process(
+      COMMAND           git status
+      WORKING_DIRECTORY ${FOAM_ROOT}
+      OUTPUT_VARIABLE   git_status
+      RESULT_VARIABLE   git_ecode
+      ERROR_QUIET
+    )
+    set(${_status} ${git_status} PARENT_SCOPE)
+    set(${_ecode} ${git_ecode} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitBranchName(var)
+#
+# Set the variable named ${var} to the git branch name of the source code
+#
+function(GetGitBranchName var)
+    set( retValue "unknown")
+
+    execute_process(
+        COMMAND         git branch --no-color
+        WORKING_DIRECTORY ${FOAM_ROOT}
+        OUTPUT_VARIABLE listOfGitBranches
+    )
+    # Create list of strings
+    string(REPLACE "\n" ";" listOfGitBranches ${listOfGitBranches})
+
+    # Iterate over list, find the string beginning with "* "
+    foreach(branch ${listOfGitBranches})
+        string(REGEX MATCH "\\* .*$" matchString ${branch})
+        string(LENGTH "${matchString}" lengthMatchString)
+	if(lengthMatchString GREATER 0)
+	    # We have  match. Cleanup and set retValue
+	    string(REPLACE "* " "" retValue ${matchString})
+        endif()
+    endforeach()
+
+    set(${var} ${retValue} PARENT_SCOPE)
+endfunction()
+
+#
+# GetGitRevNumber(var)
+#
+# Set the variable named ${var} to the git revision number of the source code
+#
+function(GetGitRevNumber var)
+    set( retValue "unknown")
+
+    execute_process(
+	COMMAND         git rev-parse --short=12 HEAD
+        WORKING_DIRECTORY ${FOAM_ROOT}
+        OUTPUT_VARIABLE git_rev_number
+    )
+
+    # Minimal check that we do have a valid string
+    string(LENGTH "${git_rev_number}" lengthString)
+    if(lengthString GREATER 0)
+        set(retValue ${git_rev_number})
+    endif()
+
+    set(${var} ${retValue} PARENT_SCOPE)
+endfunction()
+
+# CleanUpStringForCDash(var)
+#
+# Cleanup the variable named ${value} for characters not supported
+# for CDash identifiers. Return the modified value in retVar
+#
+function(CleanUpStringForCDash value retVar)
+    string(REPLACE "/" "_" value "${value}")
+    string(REPLACE " " "_" value ${value})
+    set(${retVar} ${value} PARENT_SCOPE)
+endfunction()
+
+#-----------------------------------------------------------------------------
+#
+#
 # Initialization of CTest specific variables
 #
 ## Run ctest in parallel if environment variable WM_NCOMPPROCS is set
@@ -57,13 +168,11 @@ IF (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
           SITENAME $ENV{CDASH_SUBMIT_LOCAL_HOST_ID}
           CACHE STRING "Name of the local site"
     )
-ELSE (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
+ELSE ()
     # Grab the hostname FQN; will be used for the sitename
-    execute_process(
+    GetHostName(SITENAME)
-        COMMAND         hostname -f
+
-        OUTPUT_VARIABLE SITENAME
+ENDIF()
-    )
-ENDIF  (NOT $ENV{CDASH_SUBMIT_LOCAL_HOST_ID} STREQUAL "")
 
 MESSAGE("Initializing the name of this local site to:  ${SITENAME}")
 
@@ -146,27 +255,15 @@ elseif(GIT_FOUND)
     message("The git command was found: ${GIT_EXECUTABLE}")
 
     # Check if the source code is under a valid git repository
-    execute_process(
+    GetGitStatus(GIT_STATUS GIT_ECODE)
-      COMMAND           git status
-      WORKING_DIRECTORY ${FOAM_ROOT}
-      OUTPUT_VARIABLE   GIT_STATUS
-      RESULT_VARIABLE   GIT_ECODE
-      ERROR_QUIET
-    )
 
     if(NOT GIT_ECODE)
-        # We have a valid git repository. Grab the branch and revision info.
+        # We have a valid git repository.
-        # Add to the build name
+	# Grab the branch and revision info. Add to the build name
-        exec_program(git
+	GetGitBranchName(GIT_BRANCH_NAME)
-          ARGS branch --no-color 2> /dev/null | grep '*'| awk '{print $2}'
-          OUTPUT_VARIABLE GIT_BRANCH_NAME
-          )
         message("Git branch: ${GIT_BRANCH_NAME}")
 
-        execute_process(
+	GetGitRevNumber(GIT_REV_NUMBER)
-          COMMAND         git rev-parse --short=12 HEAD
-          OUTPUT_VARIABLE GIT_REV_NUMBER
-          )
         message("Git revision: ${GIT_REV_NUMBER}")
 
         SET(BUILDNAME "${BUILDNAME}-git-branch=${GIT_BRANCH_NAME}")
@@ -216,13 +313,13 @@ endif()
 
 # Some last minute cleanup
 # Seems like no '/' or ' 'are allowed in the BUILDNAME or in the SITE name
-string(REPLACE "/" "_" BUILDNAME ${BUILDNAME})
+CleanUpStringForCDash(${BUILDNAME} BUILDNAME)
-string(REPLACE " " "_" BUILDNAME ${BUILDNAME})
+CleanUpStringForCDash(${SITE} SITE)
-string(REPLACE "/" "_" SITE ${SITE})
-string(REPLACE " " "_" SITE ${SITE})
 
 message("Build name: ${BUILDNAME}")
+message("Site name: ${SITE}")
 
+#
 # Build section
 #-----------------------------------------------------------------------------
 
@@ -282,10 +379,18 @@ IF(BUILD_TESTING)
     IF(RUN_FROM_ONE_TIMESTEP)
         # Modify the cases controlDict file in order to run for only one time step
         MESSAGE("${testRunTimeDirectory}: Modifying the controlDict files for running only one time step in directory: ${TEST_CASE_DIR}")
+	if(CMAKE_HOST_WIN32)
+          # Need to supply a bash shell to run the script under Windows
+          EXECUTE_PROCESS(
+            COMMAND bash -c "$ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForOneTimeStep.sh ${TEST_CASE_DIR}"
+            WORKING_DIRECTORY .
+            )
+	else()
           EXECUTE_PROCESS(
             COMMAND $ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForOneTimeStep.sh ${TEST_CASE_DIR}
             WORKING_DIRECTORY .
             )
+	endif()
     ENDIF(RUN_FROM_ONE_TIMESTEP)
 
 ENDIF(BUILD_TESTING)

testHarness/foam-extend/3.2/CMakeFiles/CTestConfig.cmake.foam-extend

@@ -6,6 +6,10 @@
 ##   ENABLE_TESTING()
 ##   INCLUDE(CTest)
 
+# These settings will allow you to publish your dashboards results
+# on the foam-extend CDash service hosted on SourceForge.Net
+# See here: http://foam-extend.sourceforge.net/CDash/index.php
+#
 set(CTEST_PROJECT_NAME "foam-extend-3.2")
 set(CTEST_NIGHTLY_START_TIME "01:00:00 UTC")
 
@@ -13,3 +17,17 @@ set(CTEST_DROP_METHOD "http")
 set(CTEST_DROP_SITE "foam-extend.sourceforge.net")
 set(CTEST_DROP_LOCATION "/CDash/submit.php?project=foam-extend-3.2")
 set(CTEST_DROP_SITE_CDASH TRUE)
+
+# We can override those variables for local sites so you can use
+# your own site CDash service
+# This optional file will be located here:
+# $FOAM_SITE_DIR/etc/CTestConfig.site.cmake
+#
+include($ENV{FOAM_SITE_DIR}/etc/CTestConfig.site.cmake OPTIONAL)
+
+# We can override those variables from user space so you can use
+# your own personal CDash service
+# This optional file will be located here:
+# $WM_PROJECT_USER_DIR/etc/CTestConfig.user.cmake
+#
+include($ENV{WM_PROJECT_USER_DIR}/etc/CTestConfig.user.cmake OPTIONAL)

testHarness/foam-extend/3.2/CMakeFiles/Dashboard_Tutorials.cmake.in

@@ -0,0 +1,104 @@
+# /*-------------------------------------------------------------------------*\
+#   =========                 |
+#   \\      /  F ield         | foam-extend: Open Source CFD
+#    \\    /   O peration     |
+#     \\  /    A nd           | For copyright notice see file Copyright
+#      \\/     M anipulation  |
+# -----------------------------------------------------------------------------
+# License
+#     This file is part of foam-extend.
+#
+#     foam-extend is free software: you can redistribute it and/or modify it
+#     under the terms of the GNU General Public License as published by the
+#     Free Software Foundation, either version 3 of the License, or (at your
+#     option) any later version.
+#
+#     foam-extend is distributed in the hope that it will be useful, but
+#     WITHOUT ANY WARRANTY; without even the implied warranty of
+#     MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+#     General Public License for more details.
+#
+#     You should have received a copy of the GNU General Public License
+#     along with foam-extend.  If not, see <http://www.gnu.org/licenses/>.
+#
+# Description
+#        "ctest -S" script configured to drive the Experimental, Nightly and
+#        Continuous dashboards for the FOAM tutorials
+#
+# Author
+#        Martin Beaudoin, Hydro-Quebec, 2015. All rights reserved
+#
+# \*-------------------------------------------------------------------------*/
+#
+set(THIS_SUBPROJECT "Tutorials")
+set(CTEST_SOURCE_DIRECTORY $ENV{WM_PROJECT_DIR})
+set(CTEST_BINARY_DIRECTORY "@binary_dir@")
+set(CTEST_BUILD_NAME "@BUILDNAME@")
+set(CTEST_SITE "@SITE@")
+set(PROCESSOR_COUNT $ENV{WM_NCOMPPROCS})
+set(CTEST_CMAKE_GENERATOR "Unix Makefiles")
+
+# We add the current script as a Build note.
+set(CTEST_NOTES_FILES "${CTEST_SCRIPT_DIRECTORY}/${CTEST_SCRIPT_NAME}")
+
+# Run in parallel
+if(PROCESSOR_COUNT)
+  set(CTEST_BUILD_FLAGS "-j${PROCESSOR_COUNT}")
+endif()
+
+
+# We will be using a CDash subproject if the required subproject is defined
+# on the remote CDash server.
+# Otherwise, the results will still get submitted, but under the global
+# "Project" Dashboard, not under the "SubProjects" section.
+# This way, we keep on supporting CDash sites where subprojects are 
+# still not defined.
+
+# Get the CTEST_PROJECT_SUBPROJECTS definition:
+include(${CTEST_SOURCE_DIRECTORY}/CTestConfig.cmake)
+
+list(FIND CTEST_PROJECT_SUBPROJECTS ${THIS_SUBPROJECT} subProjectIsSupported)
+
+if (NOT subProjectIsSupported EQUAL -1)
+  message("Dashboard: Using SubProject: ${THIS_SUBPROJECT}")
+  set_property(GLOBAL PROPERTY SubProject ${THIS_SUBPROJECT})
+  set_property(GLOBAL PROPERTY Label ${THIS_SUBPROJECT})
+endif()
+
+# Select the required model : Experimental, Nightly, Continuous
+# Default model: Experimental
+set(DASHBOARD_MODEL Experimental)
+if(${CTEST_SCRIPT_ARG} MATCHES Nightly)
+  set(DASHBOARD_MODEL Nightly)
+elseif(${CTEST_SCRIPT_ARG} MATCHES Continuous)
+  set(DASHBOARD_MODEL Continuous)
+endif()
+
+# Starting the various tests for the specified dashboard model
+ctest_start(${DASHBOARD_MODEL})
+
+# No need to configure, cmake took care of it already
+#ctest_configure()    
+
+
+# Intentionally no ctest_update() step in this script when running the 
+# Experimental dashboard. 
+# We do not want the source code to get updated since we actually want to test 
+# the current instance of this source code. So we can test without having to 
+# commit the source code
+
+if(${DASHBOARD_MODEL} MATCHES Experimental)
+  message("Experimental dashboard: We skip the repository update.")
+else()
+  # Updating the repository for the Nightly and Continuous dashboards
+  ctest_update()
+endif()
+
+# We compile the source code 
+ctest_build()
+
+# We run the tests
+ctest_test()
+
+# We submit the results to the CDash service
+ctest_submit()

testHarness/foam-extend/3.2/CMakeFiles/FOAM_Tutorials.cmake

@@ -53,11 +53,18 @@ file(COPY $ENV{FOAM_TUTORIALS}/ DESTINATION ${TEST_CASE_DIR})
 # The test harness relies on the presence of an Allrun file for
 # running the case
 MESSAGE("${testRunTimeDirectory}: Checking for missing Allrun file in tutorials")
+if(CMAKE_HOST_WIN32)
+  # Need to supply a bash shell to run the script under Windows
+  EXECUTE_PROCESS(
+    COMMAND bash -c "$ENV{FOAM_TEST_HARNESS_DIR}/scripts/addMissingAllrunFileToTutorial.sh ${TEST_CASE_DIR} $ENV{FOAM_TEST_HARNESS_DIR}/scripts/Allrun.default"
+    WORKING_DIRECTORY .
+    )
+else()
   EXECUTE_PROCESS(
     COMMAND $ENV{FOAM_TEST_HARNESS_DIR}/scripts/addMissingAllrunFileToTutorial.sh ${TEST_CASE_DIR} $ENV{FOAM_TEST_HARNESS_DIR}/scripts/Allrun.default
     WORKING_DIRECTORY .
     )
-
+endif()
 # Iterate over each tutorial case:
 # We are looking for tutorial cases with an Allrun file.
 # If this file is present, (and it should), we add this case to the list of cases to run.
@@ -90,31 +97,61 @@ FOREACH(caseWithAllrun ${listofCasesWithAllrun})
     MESSAGE("Found Allrun file in directory: ${thisCasePath}")
 
     # Grab the parent name of the case directory
-    string(REPLACE ${TEST_CASE_DIR}/ "" caseParentPath ${caseWithAllrun})
+    string(REPLACE ${TEST_CASE_DIR}/ "" caseParentPath ${thisCasePath})
 
     # Construct the testId
     string(REPLACE "/" "_" testId ${caseParentPath})
-    SET(testId ${testId}${testIdSuffix})
+    SET(testId ${testId}_Allrun${testIdSuffix})
 
     # Add the test to the test harness
     MESSAGE("    Adding test: ${testId}")
     ADD_TEST(${testId} bash -c "cd ${thisCasePath}; ./Allrun")
 
+    # We extract a label name from the top level tutorial directories
+    # (eg: basic, incompressible, immersedBoundary, etc). We will use this
+    # label in order to categorize the various test cases under a more 'generic
+    # topic', so we can for instance limit the testharness to the
+    # 'incompressible' test cases, etc., simply by using the ctest -L command.
+    #
+    # ctest --print-labels will print the list of all available labels.
+    #
+    string(REPLACE ${TEST_CASE_DIR}/ ""  tmpLabel ${caseWithAllrun})
+    string(FIND ${tmpLabel} "/" indexFirstSlash)
+    string(SUBSTRING ${tmpLabel} 0 ${indexFirstSlash} testLabel)
+
     # Add a dependency on the global clean-up target
     # When running in parallel, you need to wait for the cleanup to finish first
-    SET_TESTS_PROPERTIES(${testId} PROPERTIES DEPENDS ${cleanCasesTestId})
+    message("    This test case will have the following labels: Tutorials, ${testLabel}")
+    SET_TESTS_PROPERTIES(${testId} PROPERTIES DEPENDS ${cleanCasesTestId} LABELS "Tutorials;${testLabel}")
 
     # Use this following entry instead for testing purpose
     #ADD_TEST(${testId} bash -c "cd ${thisCasePath}; true")
 
-  ENDIF(NOT ${thisCasePath} STREQUAL ${TEST_CASE_DIR})
+  ENDIF()
 ENDFOREACH(caseWithAllrun)
 
 # Modify the cases Allrun files to incorporate additional shell functions
 MESSAGE("${testRunTimeDirectory}: Modifying the Allrun files for additional shell functions in directory: ${TEST_CASE_DIR}")
+if(CMAKE_HOST_WIN32)
+  # Need to supply a bash shell to run the script under Windows
+  EXECUTE_PROCESS(
+    COMMAND bash -c "$ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForTestHarness.sh ${TEST_CASE_DIR} $ENV{FOAM_TEST_HARNESS_DIR}/scripts/AdditionalRunFunctions"
+    WORKING_DIRECTORY .
+    )
+else()
   EXECUTE_PROCESS(
     COMMAND $ENV{FOAM_TEST_HARNESS_DIR}/scripts/prepareCasesForTestHarness.sh ${TEST_CASE_DIR} $ENV{FOAM_TEST_HARNESS_DIR}/scripts/AdditionalRunFunctions
     WORKING_DIRECTORY .
     )
+endif()
+
+# Configure the various ctest -S Dashboard drivers
+
+# Driver for the tutorials
+configure_file(
+  "$ENV{FOAM_TEST_HARNESS_DIR}/CMakeFiles/Dashboard_Tutorials.cmake.in"
+  "$ENV{FOAM_TEST_HARNESS_DIR}/runDir/Dashboard_Tutorials.cmake"
+  @ONLY)
+
 
 # That's it.

testHarness/foam-extend/3.2/runDir/Allrun_CMakeOnly

@@ -73,7 +73,12 @@ fi
 
 # Make sure the CMake and tutorials runtime files are updated
 # We need cmake version 2.8.0 at least
-cmake $WM_PROJECT_DIR
+if [ "$WM_ARCH_BASE" == "mingw" ]
+then
+    cmake $WM_PROJECT_DIR -G "MSYS Makefiles"
+else
+    cmake $WM_PROJECT_DIR -G "Unix Makefiles"
+fi
 
 # All set. Now we can run the available test harness
 #

testHarness/foam-extend/3.2/runDir/Allrun_Experimental

@@ -79,18 +79,28 @@ fi
 
 # Make sure the CMake and tutorials runtime files are updated
 # We need cmake version 2.8.0 at least
-cmake $WM_PROJECT_DIR
+if [ "$WM_ARCH_BASE" == "mingw" ]
+then
+    cmake $WM_PROJECT_DIR -G "MSYS Makefiles"
+else
+    cmake $WM_PROJECT_DIR -G "Unix Makefiles"
+fi
 
 # All set. Now we can run the available test harness
 #
 # Invoke make help for the complete list of available commands.
 #
 # User-demand testing.
-# Will do: ExperimentalConfigure + ExperimentalBuild + ExperimentalTest + ExperimentalSubmit
+#
-make Experimental
+# The old way. Still valid, but not supporting subprojects
-
+# Will do: ExperimentalBuild + ExperimentalTest + ExperimentalSubmit
+#make Experimental
+#
 # Nightly testing
-# Will do: NightlyUpdate + NightylConfigure + NightlyBuild + NightlyTest + NightlySubmit
+# Will do: NightlyUpdate + NightlyBuild + NightlyTest + NightlySubmit
 # make Nightly
 
+# The new way. With support for subprojects
+ctest -V -S ./Dashboard_Tutorials.cmake,Experimental
+
 # That's it

testHarness/foam-extend/3.2/runDir/Allrun_Nightly

@@ -79,18 +79,28 @@ fi
 
 # Make sure the CMake and tutorials runtime files are updated
 # We need cmake version 2.8.0 at least
-cmake $WM_PROJECT_DIR
+if [ "$WM_ARCH_BASE" == "mingw" ]
+then
+    cmake $WM_PROJECT_DIR -G "MSYS Makefiles"
+else
+    cmake $WM_PROJECT_DIR -G "Unix Makefiles"
+fi
 
 # All set. Now we can run the available test harness
 #
 # Invoke make help for the complete list of available commands.
 #
 # User-demand testing.
-# Will do: ExperimentalConfigure + ExperimentalBuild + ExperimentalTest + ExperimentalSubmit
+#
+# The old way. Still valid, but not supporting subprojects
+# Will do: ExperimentalBuild + ExperimentalTest + ExperimentalSubmit
 #make Experimental
-
+#
 # Nightly testing
-# Will do: NightlyUpdate + NightylConfigure + NightlyBuild + NightlyTest + NightlySubmit
+# Will do: NightlyUpdate + NightlyBuild + NightlyTest + NightlySubmit
-make Nightly
+# make Nightly
+
+# The new way. With support for subprojects
+ctest -V -S ./Dashboard_Tutorials.cmake,Nightly
 
 # That's it

tutorials/immersedBoundary/backwardStepShortTurbulentSimpleIbFoam/Allrun

@@ -6,7 +6,7 @@
 application="simpleIbFoam"
 
 runApplication blockMesh
-cp save/boundary constant/polyMesh
+\cp save/boundary constant/polyMesh
 
 \mkdir 0
 \cp 0_org/* 0/

tutorials/immersedBoundary/cylBumpInterIbFoam/Allrun

@@ -6,6 +6,7 @@
 application="interIbFoam"
 
 runApplication blockMesh
+\cp -f save/boundary constant/polyMesh/
 
 mkdir 0
 cp 0_org/* 0/

tutorials/immersedBoundary/movingCylinderInChannelIco/.gitignore

@@ -0,0 +1,52 @@
+# git-ls-files --others --exclude-from=.git/info/exclude
+# Lines that start with '#' are comments.
+
+# editor and misc backup files - anywhere
+*~
+.*~
+*.bak
+*.bak[0-9][0-9]
+*.orig
+*.orig[0-9][0-9]
+\#*\#
+
+# file-browser settings - anywhere
+.directory
+
+# CVS recovered versions - anywhere
+.#*
+
+# SVN directories - anywhere
+
+.svn/
+
+# OpenFOAM results
+
+[1-9]*/
+!/0/
+processor*
+*/polyMesh/*
+!*/polyMesh/blockMeshDict
+cellToRegion*
+log*
+
+# packages - anywhere
+
+*.tar.bz2
+*.tar.gz
+*.tar
+*.tgz
+*.gtgz
+
+# Pictures and movies
+
+*.png
+*.jpg
+*.jpeg
+*.bmp
+*.png
+*.avi
+*.mp4
+*.mpg
+
+#end-of-file

tutorials/immersedBoundary/movingCylinderInChannelIco/0_org/U

@@ -0,0 +1,65 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       volVectorField;
+    object      U;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions      [0 1 -1 0 0 0 0];
+
+internalField   uniform (1 0 0);
+
+boundaryField
+{
+    ibCylinder
+    {
+        type immersedBoundary;
+        refValue uniform (0 0 0);
+        refGradient  uniform (0 0 0);
+        fixesValue yes;
+
+        setDeadCellValue   yes;
+        deadCellValue      (0 0 0);
+    }
+
+    in
+    {
+        type fixedValue;
+        value uniform (1 0 0);
+    }
+
+    out
+    {
+        type inletOutlet;
+        inletValue uniform (0 0 0);
+        value uniform (1 0 0);
+    }
+
+    top
+    {
+        type fixedValue;
+        value uniform (0 0 0);
+    }
+
+    bottom
+    {
+        type fixedValue;
+        value uniform (0 0 0);
+    }
+
+    frontAndBack
+    {
+        type empty;
+    }
+}
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/0_org/p

@@ -0,0 +1,65 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       volScalarField;
+    object      p;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+dimensions [0 2 -2 0 0 0 0];
+
+internalField uniform 0;
+
+boundaryField
+{
+    ibCylinder
+    {
+        type immersedBoundary;
+        refValue uniform 0;
+        refGradient  uniform 0;
+        fixesValue no;
+
+        setDeadCellValue   yes;
+        deadCellValue      0;
+
+        value uniform 0;
+    }
+
+    in
+    {
+        type zeroGradient;
+    }
+
+    out
+    {
+//         type zeroGradient;
+
+        type fixedValue;
+        value uniform 0;
+    }
+
+    top
+    {
+        type zeroGradient;
+    }
+
+    bottom
+    {
+        type zeroGradient;
+    }
+
+    frontAndBack
+    {
+        type empty;
+    }
+}
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/Allclean

@@ -0,0 +1,9 @@
+#!/bin/sh
+
+# Source tutorial clean functions
+. $WM_PROJECT_DIR/bin/tools/CleanFunctions
+
+cleanCase
+
+\rm -rf 0
+\rm -f constant/polyMesh/boundary

tutorials/immersedBoundary/movingCylinderInChannelIco/Allrun

@@ -0,0 +1,15 @@
+#!/bin/sh
+# Source tutorial run functions
+. $WM_PROJECT_DIR/bin/tools/RunFunctions
+
+# Get application name
+application="icoDyMIbFoam"
+
+runApplication blockMesh
+\cp save/boundary constant/polyMesh/
+
+mkdir 0
+\cp -f 0_org/* 0/
+
+runApplication potentialIbFoam
+runApplication $application

tutorials/immersedBoundary/movingCylinderInChannelIco/constant/dynamicMeshDict

@@ -0,0 +1,43 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  | For copyright notice see file Copyright         |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      dynamicMeshDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// dynamicFvMesh   staticFvMesh;
+dynamicFvMesh   immersedBoundarySolidBodyMotionFvMesh;
+
+immersedBoundarySolidBodyMotionFvMeshCoeffs
+{
+    motionFunctions
+    (
+        ibCylinder
+        {
+//             solidBodyMotionFunction     translation;
+//             translationCoeffs
+//             {
+//                 velocity (0.1 0 0);
+//             }
+
+            solidBodyMotionFunction     linearOscillation;
+            linearOscillationCoeffs
+            {
+                amplitude    (0.5 0 0);
+                period       2.5;
+            }
+        }
+    );
+}
+
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/constant/polyMesh/blockMeshDict

@@ -0,0 +1,69 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      blockMeshDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+convertToMeters 1;
+
+vertices
+(
+    (-1   -0.5   0)
+    (2    -0.5   0)
+    (2     0.5   0)
+    (-1    0.5   0)
+    (-1   -0.5   0.1)
+    (2    -0.5   0.1)
+    (2     0.5   0.1)
+    (-1    0.5   0.1)
+);
+
+blocks
+(
+    hex (0 1 2 3 4 5 6 7) (75 25 1) simpleGrading (1 1 1)
+);
+
+edges
+(
+);
+
+patches
+(
+    patch in
+    (
+        (0 4 7 3)
+    )
+    patch out
+    (
+        (2 6 5 1)
+    )
+    patch top
+    (
+        (3 7 6 2)
+    )
+    patch bottom
+    (
+        (1 5 4 0)
+    )
+    empty frontAndBack
+    (
+        (0 3 2 1)
+        (4 5 6 7)
+    )
+);
+
+mergePatchPairs
+(
+);
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/constant/transportProperties

@@ -0,0 +1,19 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      transportProperties;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+nu              nu [0 2 -1 0 0 0 0] 0.01;
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/constant/triSurface/ibCylinder.ftr

@@ -0,0 +1,210 @@
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+(
+
+cylinder
+empty
+)
+
+
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+       vertex -0.125 -0.216506 0.1
+       vertex -0.125 -0.216506 0
+       vertex -0.095671 -0.23097 0
+    endloop
+  endfacet
+  facet normal -0.555568 -0.831471 0
+    outer loop
+       vertex -0.125 -0.216506 0
+       vertex -0.125 -0.216506 0.1
+       vertex -0.152191 -0.198338 0.1
+    endloop
+  endfacet
+  facet normal -0.555568 -0.831471 -0
+    outer loop
+       vertex -0.152191 -0.198338 0.1
+       vertex -0.152191 -0.198338 0
+       vertex -0.125 -0.216506 0
+    endloop
+  endfacet
+  facet normal -0.659357 -0.75183 0
+    outer loop
+       vertex -0.152191 -0.198338 0
+       vertex -0.152191 -0.198338 0.1
+       vertex -0.176776 -0.176776 0.1
+    endloop
+  endfacet
+  facet normal -0.659357 -0.75183 -0
+    outer loop
+       vertex -0.176776 -0.176776 0.1
+       vertex -0.176776 -0.176776 0
+       vertex -0.152191 -0.198338 0
+    endloop
+  endfacet
+endsolid cylinder

tutorials/immersedBoundary/movingCylinderInChannelIco/save/blockMeshDict

@@ -0,0 +1,69 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      blockMeshDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+convertToMeters 1;
+
+vertices
+(
+    (-1   -0.5   0)
+    (2    -0.5   0)
+    (2     0.5   0)
+    (-1    0.5   0)
+    (-1   -0.5   0.1)
+    (2    -0.5   0.1)
+    (2     0.5   0.1)
+    (-1    0.5   0.1)
+);
+
+blocks
+(
+    hex (0 1 2 3 4 5 6 7) (75 25 1) simpleGrading (1 1 1)
+);
+
+edges
+(
+);
+
+patches
+(
+    patch in
+    (
+        (0 4 7 3)
+    )
+    patch out
+    (
+        (2 6 5 1)
+    )
+    patch top
+    (
+        (3 7 6 2)
+    )
+    patch bottom
+    (
+        (1 5 4 0)
+    )
+    empty frontAndBack
+    (
+        (0 3 2 1)
+        (4 5 6 7)
+    )
+);
+
+mergePatchPairs
+(
+);
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/save/boundary

@@ -0,0 +1,60 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  | For copyright notice see file Copyright         |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       polyBoundaryMesh;
+    location    "constant/polyMesh";
+    object      boundary;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+6
+(
+    ibCylinder
+    {
+        type            immersedBoundary;
+        nFaces          0;
+        startFace       3650;
+
+        internalFlow    no;
+    }
+    in
+    {
+        type            patch;
+        nFaces          25;
+        startFace       3650;
+    }
+    out
+    {
+        type            patch;
+        nFaces          25;
+        startFace       3675;
+    }
+    top
+    {
+        type            patch;
+        nFaces          75;
+        startFace       3700;
+    }
+    bottom
+    {
+        type            patch;
+        nFaces          75;
+        startFace       3775;
+    }
+    frontAndBack
+    {
+        type            empty;
+        nFaces          3750;
+        startFace       3850;
+    }
+)
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/system/controlDict

@@ -0,0 +1,83 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      controlDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+application icoDyMFoam;
+
+startFrom       startTime;
+
+startTime       0;
+
+stopAt          endTime;
+
+endTime         5;
+
+deltaT          0.01;
+
+writeControl    runTime;
+writeInterval   0.2;
+
+// writeControl    timeStep;
+// writeInterval   1;
+
+purgeWrite      0;
+
+writeFormat     ascii;
+
+writePrecision  6;
+
+writeCompression compressed;
+
+timeFormat      general;
+
+timePrecision   6;
+
+runTimeModifiable yes;
+
+adjustTimeStep  no;
+
+maxCo           0.2;
+
+libs
+(
+    "libimmersedBoundary.so" 
+    "libimmersedBoundaryDynamicFvMesh.so" 
+);
+
+functions
+(
+    forces
+    {
+        type               immersedBoundaryForces;
+        functionObjectLibs ("libimmersedBoundaryForceFunctionObject.so");
+
+        outputControl timeStep;
+        outputInterval 1;
+        patches ( ibCylinder );
+
+        pName       p;
+        UName       U;
+        rhoName     rhoInf;
+        rhoInf      1;
+
+        log         true;
+        CofR        ( 0 0 0 );
+
+        Aref 0.05;
+        Uref 1;
+    }
+);
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/system/decomposeParDict

@@ -0,0 +1,50 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      decomposeParDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+numberOfSubdomains 10;
+
+method simple;
+
+simpleCoeffs
+{
+    n (5 2 1);
+    delta           0.001;
+}
+
+hierarchicalCoeffs
+{
+    n               (1 1 1);
+    delta           0.001;
+    order           xyz;
+}
+
+metisCoeffs
+{
+    processorWeights 4(1 1 1 1);
+}
+
+manualCoeffs
+{
+    dataFile        "cellDecomposition";
+}
+
+distributed     no;
+
+roots
+(
+);
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/system/fvSchemes

@@ -0,0 +1,59 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      fvSchemes;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+ddtSchemes
+{
+    default Euler;
+}
+
+gradSchemes
+{
+    default         Gauss linear;
+    grad(p)         Gauss linear;
+}
+
+divSchemes
+{
+    default         none;
+    div(phi,U)      Gauss upwind;
+}
+
+laplacianSchemes
+{
+    default         none;
+    laplacian(nu,U) Gauss linear corrected;
+    laplacian((1|A(U)),p) Gauss linear corrected;
+
+    laplacian(1,p) Gauss linear corrected;
+}
+
+interpolationSchemes
+{
+    default         linear;
+    interpolate(HbyA) linear;
+}
+
+snGradSchemes
+{
+    default         corrected;
+}
+
+fluxRequired
+{
+    p;
+}
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/system/fvSolution

@@ -0,0 +1,68 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      fvSolution;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+solvers
+{
+    p
+    {
+        solver          amgSolver;
+        cycle           W-cycle;
+        policy          PAMG;
+        nPreSweeps      2;
+        nPostSweeps     2;
+        groupSize       4;
+        minCoarseEqns   4;
+        nMaxLevels      100;
+        scale           on;
+        smoother        symGaussSeidel;
+
+        minIter         1;
+        maxIter         100;
+        tolerance       1e-7;
+        relTol          0.01;
+    }
+
+    U
+    {
+        solver           BiCGStab;
+        preconditioner   ILU0;
+
+        minIter          1;
+        maxIter          1000;
+        tolerance        1e-08;
+        relTol           0;
+    }
+}
+
+SIMPLE
+{
+    nNonOrthogonalCorrectors 5;
+
+    pRefPoint (0 -0.45 0.05);
+    pRefValue 0;
+}
+
+PIMPLE
+{
+    nOuterCorrectors 1;
+    nCorrectors     4;
+    nNonOrthogonalCorrectors 0;
+
+    pRefPoint (0 -0.45 0.05);
+    pRefValue 0;
+}
+
+// ************************************************************************* //

tutorials/immersedBoundary/movingCylinderInChannelIco/system/mapFieldsDict

@@ -0,0 +1,30 @@
+/*--------------------------------*- C++ -*----------------------------------*\
+| =========                 |                                                 |
+| \\      /  F ield         | foam-extend: Open Source CFD                    |
+|  \\    /   O peration     | Version:     3.2                                |
+|   \\  /    A nd           | Web:         http://www.foam-extend.org         |
+|    \\/     M anipulation  |                                                 |
+\*---------------------------------------------------------------------------*/
+FoamFile
+{
+    version     2.0;
+    format      ascii;
+    class       dictionary;
+    object      mapFieldsDict;
+}
+// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
+
+// List of pairs of source/target patches for mapping
+patchMap
+(
+//     lid movingWall
+);
+
+// List of target patches cutting the source domain (these need to be
+// handled specially e.g. interpolated from internal values)
+cuttingPatches
+(
+//     fixedWalls
+);
+
+// ************************************************************************* //

tutorials/immersedBoundary/simpleSilencerLaminarIcoIbFoam/Allrun

@@ -9,7 +9,7 @@ mkdir constant/polyMesh
 cp -f save/blockMeshDict constant/polyMesh
 
 runApplication blockMesh
-cp -f save/boundary constant/polyMesh/
+\cp -f save/boundary constant/polyMesh/
 
 runApplication refineImmersedBoundaryMesh -ibCellCellFaces
 

tutorials/immersedBoundary/sphereInChannel/Allrun

@@ -8,10 +8,10 @@ application="icoIbFoam"
 compileApplication refineSphereMesh
 
 mkdir constant/polyMesh
-cp -f save/blockMeshDict constant/polyMesh
+\cp -f save/blockMeshDict constant/polyMesh
 
 runApplication blockMesh
-cp -f save/boundary constant/polyMesh/
+\cp -f save/boundary constant/polyMesh/
 
 runApplication refineSphereMesh
 

tutorials/immersedBoundary/thickPlateRefinedMesh/Allrun

@@ -8,10 +8,10 @@ application="icoIbFoam"
 compileApplication refineThickPlateMesh
 
 mkdir constant/polyMesh
-cp -f save/blockMeshDict constant/polyMesh
+\cp -f save/blockMeshDict constant/polyMesh
 
 runApplication blockMesh
-cp -f save/boundary constant/polyMesh/
+\cp -f save/boundary constant/polyMesh/
 
 runApplication refineThickPlateMesh
 

wmake/scripts/addCompile

@@ -47,13 +47,13 @@ fi
 
 if [ "$WM_PROJECT_DIR" ]
 then
-    sed -e s%$WM_PROJECT_DIR%'$(WM_PROJECT_DIR)'% > $depName
+    sed -e s%:.*$WM_PROJECT_DIR%': $(WM_PROJECT_DIR)'% > $depName
 else
     cat > $depName
 fi
 
 sed -e s%".*.o.*:"%'$(OBJECTS_DIR)/'"$objectName\:"%  \
-    -e s%$WM_PROJECT_DIR%'$(WM_PROJECT_DIR)'%         \
+    -e s%:.*$WM_PROJECT_DIR%': $(WM_PROJECT_DIR)'%         \
     >> $depName
 
 echo '$(OBJECTS_DIR)/'$objectName': $(EXE_DEP)' >> $depName