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foam-extend4.1-coherent-io/applications/utilities/preProcessing/molConfig/genMolConfig.C

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/*---------------------------------------------------------------------------*\
========= |
\\ / F ield | OpenFOAM: The Open Source CFD Toolbox
\\ / O peration |
\\ / A nd | Copyright held by original author
\\/ M anipulation |
-------------------------------------------------------------------------------
License
This file is part of OpenFOAM.
OpenFOAM is free software; you can redistribute it and/or modify it
under the terms of the GNU General Public License as published by the
Free Software Foundation; either version 2 of the License, or (at your
option) any later version.
OpenFOAM is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License
for more details.
You should have received a copy of the GNU General Public License
along with OpenFOAM; if not, write to the Free Software Foundation,
Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
\*---------------------------------------------------------------------------*/
#include "molConfig.H"
#include "fvCFD.H"
using namespace Foam;
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
// Main program:
int main(int argc, char *argv[])
{
# include "setRootCase.H"
# include "createTime.H"
# include "createMesh.H"
Info<< nl << "Reading molecular configuration description dictionary"
<< endl;
IOobject molConfigDescriptionIOobject
(
"molConfigDict",
runTime.system(),
runTime,
IOobject::MUST_READ,
IOobject::NO_WRITE,
false
);
if (!molConfigDescriptionIOobject.headerOk())
{
FatalErrorIn(args.executable())
<< "Cannot find molConfig description file " << nl
<< args.caseName()/runTime.system()/"molConfig"/"molConfigDict"
<< nl << exit(FatalError);
}
IOdictionary molConfigDescription(molConfigDescriptionIOobject);
// Create molCloud, registering object with mesh
Info<< nl << "Creating molecular configuration" << endl;
molConfig molecules(molConfigDescription, mesh);
label totalMolecules = molecules.nMol();
if (Pstream::parRun())
{
reduce(totalMolecules, sumOp<label>());
}
Info<< nl << "Total number of molecules added: " << totalMolecules
<< nl << endl;
moleculeCloud molCloud
(
mesh,
molecules.nMol(),
molecules.id(),
molecules.mass(),
molecules.positions(),
molecules.cells(),
molecules.U(),
molecules.A(),
molecules.tethered(),
molecules.tetherPositions()
);
IOdictionary idListDict
(
IOobject
(
"idList",
mesh.time().constant(),
mesh,
IOobject::NO_READ,
IOobject::AUTO_WRITE
)
);
idListDict.add("idList", molecules.molIdList());
IOstream::defaultPrecision(12);
Info << nl << "Writing molecular configuration" << endl;
if (!mesh.write())
{
FatalErrorIn(args.executable())
<< "Failed writing moleculeCloud."
<< nl << exit(FatalError);
}
Info<< nl << "ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
Info << nl << "End\n" << endl;
return 0;
}
// ************************************************************************* //