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feat/api #46

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Gregor Weiss wants to merge 56 commits from feat/api into main
pull from: feat/api
merge into: TOPIO:main
Conversation 0 Commits 56 Files changed 21 +45 -49
2 changed files with 45 additions and 49 deletions
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Showing only changes of commit 26c00bd4e3 - Show all commits

10
include/interfaces/reader/eas3.h
View file

@ -332,9 +332,13 @@
} field; } field;
// TODO: implement aux as queue // TODO: implement aux as queue
uchar *uchar_aux; struct aux
uint32 aux_pos; {
uint32 aux_len; uchar *ptr;
uint32 pos;
uint32 len;
} aux;
} eas3_data; } eas3_data;
/************************************************************************************************************\ /************************************************************************************************************\

84
src/interfaces/reader/eas3.c
View file

@ -93,28 +93,28 @@
! information. ! ! information. !
! ! ! !
\*----------------------------------------------------------------------------------------------------------*/ \*----------------------------------------------------------------------------------------------------------*/
#define aux_enqueue(aux, aux_pos, aux_len, chunck, chunck_len) \ #define aux_enqueue(aux, chunck, chunck_len) \
{ \ { \
if (aux_pos + chunck_len > aux_len) \ if (aux.pos + chunck_len > aux.len) \
{ \ { \
while(aux_pos + chunck_len > aux_len) \ while(aux.pos + chunck_len > aux.len) \
{ \ { \
aux_len += aux_len / 2; \ aux.len += aux.len / 2; \
} \ } \
aux = realloc(aux, aux_len); \ aux.ptr = realloc(aux.ptr, aux.len); \
} \ } \
memcpy(aux + aux_pos, chunck, chunck_len); \ memcpy(aux.ptr + aux.pos, chunck, chunck_len); \
aux_pos += chunck_len; \ aux.pos += chunck_len; \
} }
#define aux_dequeue(aux, aux_pos, aux_len, chunck, chunck_len) \ #define aux_dequeue(aux, chunck, chunck_len) \
{ \ { \
if(aux_pos + chunck_len <= aux_len) { \ if(aux.pos + chunck_len <= aux.len) { \
memcpy(chunck, aux + aux_pos, chunck_len); \ memcpy(chunck, aux.ptr + aux.pos, chunck_len); \
aux_pos += chunck_len; \ aux.pos += chunck_len; \
} else { \ } else { \
fprintf(stderr, MEMERROR); \ fprintf(stderr, MEMERROR); \
} \ } \
} }
/*----------------------------------------------------------------------------------------------------------*\ /*----------------------------------------------------------------------------------------------------------*\
@ -395,10 +395,10 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! block has been chosen arbitrarily and should be large ! ! block has been chosen arbitrarily and should be large !
! enough to prevent excessive reallocation. ! ! enough to prevent excessive reallocation. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
data->uchar_aux = calloc(AUX_SIZE, sizeof(uchar)); data->aux.ptr = calloc(AUX_SIZE, sizeof(uchar));
data->aux_pos = 0; data->aux.pos = 0;
data->aux_len = AUX_SIZE; data->aux.len = AUX_SIZE;
if(!data->uchar_aux) if(!data->aux.ptr)
{ {
// memory allocation error // memory allocation error
fprintf(stderr, MEMERROR); fprintf(stderr, MEMERROR);
@ -436,8 +436,7 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! Emit the standard parameters to the auxiliary informa- ! ! Emit the standard parameters to the auxiliary informa- !
! tion information memory block. ! ! tion information memory block. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
aux_enqueue(data->uchar_aux, data->aux_pos, data->aux_len, aux_enqueue(data->aux, (uchar*)params, 176);
(uchar*)params, 176);
/*--------------------------------------------------------*\ /*--------------------------------------------------------*\
! Convert the parameters required for the bwc compression ! ! Convert the parameters required for the bwc compression !
@ -501,8 +500,7 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! Emit the time step array to the auxiliary information ! ! Emit the time step array to the auxiliary information !
! memory block. ! ! memory block. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
aux_enqueue(data->uchar_aux, data->aux_pos, data->aux_len, buffer_char, aux_enqueue(data->aux, buffer_char, params->nts * sizeof(uint64));
params->nts * sizeof(uint64));
/*--------------------------------------------------------*\ /*--------------------------------------------------------*\
! Check if any attributes have been specified in the eas3 ! ! Check if any attributes have been specified in the eas3 !
@ -535,8 +533,7 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! Emit the timestep attribute array to the auxiliary infor-! ! Emit the timestep attribute array to the auxiliary infor-!
! mation memory block. ! ! mation memory block. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
aux_enqueue(data->uchar_aux, data->aux_pos, data->aux_len, buffer_char, aux_enqueue(data->aux, buffer_char, params->nts * ATTRLEN * sizeof(char));
params->nts * ATTRLEN * sizeof(char));
for(i = 0; i < params->npar; ++i) for(i = 0; i < params->npar; ++i)
{ {
@ -607,8 +604,7 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! Emit the remaining header information the the auxiliary ! ! Emit the remaining header information the the auxiliary !
! information stream. ! ! information stream. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
aux_enqueue(data->uchar_aux, data->aux_pos, data->aux_len, aux_enqueue(data->aux, buffer_char, Lread);
buffer_char, Lread);
/*--------------------------------------------------------*\ /*--------------------------------------------------------*\
! Free the buffer character array. ! ! Free the buffer character array. !
@ -620,15 +616,15 @@ read_eas3_header(FILE *const fp, eas3_data *const data)
! ful, the address to the aux memory block stored is ! ! ful, the address to the aux memory block stored is !
! stored in the file structure alongside its size. ! ! stored in the file structure alongside its size. !
\*--------------------------------------------------------*/ \*--------------------------------------------------------*/
if(data->aux_pos != data->aux_len) if(data->aux.pos != data->aux.len)
{ {
data->aux_len = data->aux_pos; data->aux.len = data->aux.pos;
data->uchar_aux = realloc(data->uchar_aux, data->aux_len); data->aux.ptr = realloc(data->aux.ptr, data->aux.len);
if(!data->uchar_aux) if(!data->aux.ptr)
{ {
// memory allocation error // memory allocation error
fprintf(stderr, MEMERROR); fprintf(stderr, MEMERROR);
data->aux_len = 0; data->aux.len = 0;
return 1; return 1;
} }
} }
@ -706,7 +702,7 @@ write_eas3_header(FILE *const fp, eas3_data *const data)
} }
// Rewind aux // Rewind aux
data->aux_pos = 0; data->aux.pos = 0;
/*--------------------------------------------------------*\ /*--------------------------------------------------------*\
! Get the standard parameters from the auxiliary informa- ! ! Get the standard parameters from the auxiliary informa- !
@ -720,8 +716,7 @@ write_eas3_header(FILE *const fp, eas3_data *const data)
free(params); free(params);
return 1; return 1;
} }
aux_dequeue(data->uchar_aux, data->aux_pos, data->aux_len, aux_dequeue(data->aux, params, sizeof(eas3_std_params));
params, sizeof(eas3_std_params));
if(fwrite(params, sizeof(uint64), 22, fp) != 22) if(fwrite(params, sizeof(uint64), 22, fp) != 22)
{ {
@ -757,8 +752,7 @@ write_eas3_header(FILE *const fp, eas3_data *const data)
free(buffer_char); free(buffer_char);
return 1; return 1;
} }
aux_dequeue(data->uchar_aux, data->aux_pos, data->aux_len, aux_dequeue(data->aux, buffer_char, data->params.nts * sizeof(uint64));
buffer_char, data->params.nts * sizeof(uint64));
if(fwrite(buffer_char, sizeof(uint64), data->params.nts, fp) != data->params.nts) if(fwrite(buffer_char, sizeof(uint64), data->params.nts, fp) != data->params.nts)
{ {
@ -788,8 +782,7 @@ write_eas3_header(FILE *const fp, eas3_data *const data)
free(buffer_char); free(buffer_char);
return 1; return 1;
} }
aux_dequeue(data->uchar_aux, data->aux_pos, data->aux_len, aux_dequeue(data->aux, buffer_char, data->params.nts * ATTRLEN);
buffer_char, data->params.nts * ATTRLEN);
if(fwrite(buffer_char, sizeof(uchar), data->params.nts * ATTRLEN, fp) != (data->params.nts * ATTRLEN)) if(fwrite(buffer_char, sizeof(uchar), data->params.nts * ATTRLEN, fp) != (data->params.nts * ATTRLEN))
{ {
@ -854,8 +847,7 @@ write_eas3_header(FILE *const fp, eas3_data *const data)
free(buffer_char); free(buffer_char);
return 1; return 1;
} }
aux_dequeue(data->uchar_aux, data->aux_pos, data->aux_len, aux_dequeue(data->aux, buffer_char, Lwrite);
buffer_char, Lwrite);
if(fwrite(buffer_char, sizeof(uchar), Lwrite, fp) != Lwrite) if(fwrite(buffer_char, sizeof(uchar), Lwrite, fp) != Lwrite)
{ {