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fix the second bash block

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This commit is contained in:
Kerem Kayabay 2024-02-07 17:19:05 +01:00
parent 966f73a51e
commit 2e5b17ab5e
1 changed files with 10 additions and 2 deletions
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12
reproduce_container_bug.md
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@ -13,11 +13,19 @@ udocker load -i $WS_DIR/$CONTAINER_NAME.tar $CONTAINER_NAME
rm /$WS_DIR/$CONTAINER_NAME.tar # you no longer need the tar archive rm /$WS_DIR/$CONTAINER_NAME.tar # you no longer need the tar archive
``` ```
Allocate a CPU node: Allocate a CPU node, and then:
```bash ```bash
module load bigdata/udocker/1.3.4 module load bigdata/udocker/1.3.4
export WS_DIR=$(ws_find benchmarks) export WS_DIR=$(ws_find workspace_dir) # adjust this
export UDOCKER_DIR="$WS_DIR/.udocker/"
export UDOCKER_CONTAINERS="/run/user/$PBS_JOBID/udocker/containers"
mkdir -p $UDOCKER_CONTAINERS
mkdir -p /run/user/$PBS_JOBID/tmp
export CONTAINER_NAME=ray
export CONTAINER_TAG=latest
udocker create --name=$CONTAINER_NAME:$CONTAINER_TAG
udocker ps
udocker run --volume $WS_DIR:/workspace --volume /run/user/$PBS_JOBID/tmp:/tmp $CONTAINER_NAME udocker run --volume $WS_DIR:/workspace --volume /run/user/$PBS_JOBID/tmp:/tmp $CONTAINER_NAME
``` ```