Add template files
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175
ChEESE_templates/repo/packages/extrae/package.py
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175
ChEESE_templates/repo/packages/extrae/package.py
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import os
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from spack.package import *
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from spack.pkg.builtin.boost import Boost
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# typical working line with extrae 3.0.1
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# ./configure
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# --prefix=/usr/local
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# --with-mpi=/usr/lib64/mpi/gcc/openmpi
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# --with-unwind=/usr/local
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# --with-papi=/usr
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# --with-dwarf=/usr
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# --with-elf=/usr
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# --with-dyninst=/usr
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# --with-binutils=/usr
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# --with-xml-prefix=/usr
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# --enable-openmp
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# --enable-nanos
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# --enable-pthread
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# --disable-parallel-merge
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#
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# LDFLAGS=-pthread
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class Extrae(AutotoolsPackage):
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"""Extrae is the package devoted to generate tracefiles which can
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be analyzed later by Paraver. Extrae is a tool that uses
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different interposition mechanisms to inject probes into the
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target application so as to gather information regarding the
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application performance. The Extrae instrumentation package can
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instrument the MPI programin model, and the following parallel
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programming models either alone or in conjunction with MPI :
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OpenMP, CUDA, OpenCL, pthread, OmpSs"""
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homepage = "https://tools.bsc.es/extrae"
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url = "https://ftp.tools.bsc.es/extrae/extrae-3.4.1-src.tar.bz2"
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version("4.0.6", sha256="b5060336cac57f1345faa09009b1940edf1e6991aae05cc10d0b714d31360a92")
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version("4.0.4", sha256="b867d395c344020c04e6630e9bfc10bf126e093df989d5563a2f3a6bc7568224")
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version("4.0.3", sha256="b5139a07dbb1f4aa9758c1d62d54e42c01125bcfa9aa0cb9ee4f863afae93db1")
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version("3.8.3", sha256="c3bf27fb6f18e66200e40a0b4c35bc257766e5c1a525dc5725f561879e88bf32")
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version("3.7.1", sha256="c83ddd18a380c9414d64ee5de263efc6f7bac5fe362d5b8374170c7f18360378")
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version("3.4.1", sha256="77bfec16d6b5eee061fbaa879949dcef4cad28395d6a546b1ae1b9246f142725")
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depends_on("autoconf", type="build")
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depends_on("automake", type="build")
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depends_on("libtool", type="build")
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depends_on("m4", type="build")
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depends_on("mpi")
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depends_on("libunwind")
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# TODO: replace this with an explicit list of components of Boost,
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# for instance depends_on('boost +filesystem')
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# See https://github.com/spack/spack/pull/22303 for reference
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# it seems to prevent boost reuse and force using older boost version#depends_on(Boost.with_default_variants)
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depends_on("boost")
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depends_on("libdwarf")
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depends_on("papi")
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depends_on("elf", type="link")
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depends_on("libxml2")
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depends_on("numactl")
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depends_on("binutils+libiberty@:2.33", when="@:4.0.1")
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depends_on("binutils+libiberty", when="@4.0.2:")
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depends_on("gettext")
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# gettext dependency added to find -lintl
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# https://www.gnu.org/software/gettext/FAQ.html#integrating_undefined
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build_directory = "spack-build"
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variant("dyninst", default=False, description="Use dyninst for dynamic code installation")
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depends_on("dyninst@:9", when="+dyninst")
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variant("papi", default=True, description="Use PAPI to collect performance counters")
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depends_on("papi", when="+papi")
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variant("cuda", default=False, description="Enable support for tracing CUDA")
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depends_on("cuda", when="+cuda")
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variant("cupti", default=False, description="Enable CUPTI support")
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depends_on("cuda", when="+cupti")
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conflicts("+cupti", when="~cuda", msg="CUPTI requires CUDA")
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variant("openacc", default=False, description="Enable OpenACC support")
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depends_on("cuda", when="+openacc")
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conflicts("+openacc", when="~cuda", msg="OpenACC requires CUDA")
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def configure_args(self):
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spec = self.spec
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if "^intel-oneapi-mpi" in spec:
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mpiroot = spec["mpi"].component_prefix
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else:
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mpiroot = spec["mpi"].prefix
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args = [
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"--with-mpi=%s" % mpiroot,
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"--with-unwind=%s" % spec["libunwind"].prefix,
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"--with-boost=%s" % spec["boost"].prefix,
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"--with-dwarf=%s" % spec["libdwarf"].prefix,
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"--with-elf=%s" % spec["elf"].prefix,
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"--with-xml-prefix=%s" % spec["libxml2"].prefix,
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"--with-binutils=%s" % spec["binutils"].prefix,
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]
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args += (
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["--with-papi=%s" % spec["papi"].prefix]
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if "+papi" in self.spec
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else ["--without-papi"]
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)
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args += (
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["--with-dyninst=%s" % spec["dyninst"].prefix]
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if "+dyninst" in self.spec
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else ["--without-dyninst"]
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)
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args += (
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["--with-cuda=%s" % spec["cuda"].prefix]
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if "+cuda" in self.spec
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else ["--without-cuda"]
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)
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if "+cupti" in self.spec:
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cupti_h = find_headers("cupti", spec["cuda"].prefix, recursive=True)
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cupti_dir = os.path.dirname(os.path.dirname(cupti_h[0]))
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args += ["--with-cupti=%s" % cupti_dir] if "+cupti" in self.spec else ["--without-cupti"]
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args += (
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["--with-openacc=%s" % spec["cuda"].prefix]
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if "+openacc" in self.spec
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else ["--without-openacc"]
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)
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if spec.satisfies("^dyninst@9.3.0:"):
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make.add_default_arg("CXXFLAGS=%s" % self.compiler.cxx11_flag)
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args.append("CXXFLAGS=%s" % self.compiler.cxx11_flag)
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return args
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def flag_handler(self, name, flags):
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# This was added due to:
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# - configure failure
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# https://www.gnu.org/software/gettext/FAQ.html#integrating_undefined
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# - linking error
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# https://github.com/bsc-performance-tools/extrae/issues/57
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if name == "ldlibs":
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if "intl" in self.spec["gettext"].libs.names:
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flags.append("-lintl")
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elif name == "ldflags":
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flags.append("-pthread")
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return self.build_system_flags(name, flags)
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def install(self, spec, prefix):
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with working_dir(self.build_directory):
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# parallel installs are buggy prior to 3.7
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# see https://github.com/bsc-performance-tools/extrae/issues/18
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if spec.satisfies("@3.7:"):
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make("install", parallel=True)
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else:
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make("install", parallel=False)
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def setup_run_environment(self, env):
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# set EXTRAE_HOME in the module file
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env.set("EXTRAE_HOME", self.prefix)
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def setup_dependent_build_environment(self, env, dependent_spec):
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# set EXTRAE_HOME for everyone using the Extrae package
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env.set("EXTRAE_HOME", self.prefix)
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57
ChEESE_templates/repo/packages/papi/crayftn-fixes.patch
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57
ChEESE_templates/repo/packages/papi/crayftn-fixes.patch
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@ -0,0 +1,57 @@
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From ddfa53f3e20218dceaed6e0bfbe307e531ae879f Mon Sep 17 00:00:00 2001
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From: Howard Pritchard <hppritcha@gmail.com>
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Date: Thu, 10 Dec 2020 15:05:33 -0700
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Subject: [PATCH] fix fixed form ftn argument for crayftn patch openmp.F
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Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
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diff --git a/src/ftests/Makefile b/src/ftests/Makefile
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index 315e1e76..d45fbb6d 100644
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--- a/src/ftests/Makefile
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+++ b/src/ftests/Makefile
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@@ -3,7 +3,7 @@
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include Makefile.target
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INCLUDE = -I../testlib -I. -I..
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-FFLAGS = $(CFLAGS) -ffixed-line-length-132
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+FFLAGS = $(CFLAGS) -N132
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testlibdir=../testlib
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TESTLIB= $(testlibdir)/libtestlib.a
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DOLOOPS= $(testlibdir)/do_loops.o
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diff --git a/src/ftests/openmp.F b/src/ftests/openmp.F
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index 6cd5af23..ccf9030a 100644
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--- a/src/ftests/openmp.F
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+++ b/src/ftests/openmp.F
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@@ -18,7 +18,7 @@
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tests_quiet = get_quiet()
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es = PAPI_NULL
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- call PAPIF_thread_init(omp_get_thread_num, retval)
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+ call PAPIF_thread_init(my_thread_num, retval)
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retval = PAPI_VER_CURRENT
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@@ -64,7 +64,6 @@
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!$OMP END PARALLEL
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-
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call PAPIf_stop(es, values(1), retval)
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if ( retval .NE. PAPI_OK ) then
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call ftest_fail(__FILE__, __LINE__,
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@@ -80,3 +79,12 @@
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call ftests_pass(__FILE__)
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end
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+ function my_thread_num()
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+ use omp_lib
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+ integer::my_thread_num
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+
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+ my_thread_num = omp_get_thread_num()
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+
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+ end function my_thread_num
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+
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+
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--
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2.26.2
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@ -0,0 +1,37 @@
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diff --git a/src/configure.in b/src/configure.in
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index 3cf47edc..ef5463ff 100644
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--- a/src/configure.in
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+++ b/src/configure.in
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@@ -566,7 +566,7 @@ AC_ARG_WITH(tls,
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#include <unistd.h>
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extern __thread int i;
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static int res1, res2;
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- void thread_main (void *arg) {
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+ void *thread_main (void *arg) {
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i = (int)arg;
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sleep (1);
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if ((int)arg == 1)
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diff --git a/src/libpfm4/lib/pfmlib_common.c b/src/libpfm4/lib/pfmlib_common.c
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index 335155e2..38f3f957 100644
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--- a/src/libpfm4/lib/pfmlib_common.c
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+++ b/src/libpfm4/lib/pfmlib_common.c
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@@ -1749,7 +1749,7 @@ pfmlib_pmu_validate_encoding(pfmlib_pmu_t *pmu, FILE *fp)
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pfmlib_event_attr_info_t ainfo;
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char *buf;
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size_t maxlen = 0, len;
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- int i, u, n = 0, um;
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+ int i, u, um;
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int ret, retval = PFM_SUCCESS;
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pfmlib_for_each_pmu_event(pmu, i) {
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@@ -1838,7 +1838,6 @@ pfmlib_pmu_validate_encoding(pfmlib_pmu_t *pmu, FILE *fp)
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continue;
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}
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}
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- n++;
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}
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free(buf);
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--
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2.27.0
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188
ChEESE_templates/repo/packages/papi/package.py
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188
ChEESE_templates/repo/packages/papi/package.py
Normal file
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# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
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# Spack Project Developers. See the top-level COPYRIGHT file for details.
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#
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# SPDX-License-Identifier: (Apache-2.0 OR MIT)
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import glob
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import os
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import sys
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import llnl.util.filesystem as fs
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from spack.package import *
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class Papi(AutotoolsPackage, ROCmPackage):
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"""PAPI provides the tool designer and application engineer with a
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consistent interface and methodology for use of the performance
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counter hardware found in most major microprocessors. PAPI
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enables software engineers to see, in near real time, the
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relation between software performance and processor events. In
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addition Component PAPI provides access to a collection of
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components that expose performance measurement opportunities
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across the hardware and software stack."""
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homepage = "https://icl.cs.utk.edu/papi/index.html"
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maintainers("G-Ragghianti")
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tags = ["e4s"]
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url = "https://icl.cs.utk.edu/projects/papi/downloads/papi-5.4.1.tar.gz"
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git = "https://bitbucket.org/icl/papi/src/master/"
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version("master", branch="master")
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version("7.0.1", sha256="c105da5d8fea7b113b0741a943d467a06c98db959ce71bdd9a50b9f03eecc43e")
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version("6.0.0.1", sha256="3cd7ed50c65b0d21d66e46d0ba34cd171178af4bbf9d94e693915c1aca1e287f")
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version("6.0.0", sha256="3442709dae3405c2845b304c06a8b15395ecf4f3899a89ceb4d715103cb4055f")
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version("5.7.0", sha256="d1a3bb848e292c805bc9f29e09c27870e2ff4cda6c2fba3b7da8b4bba6547589")
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version("5.6.0", sha256="49b7293f9ca2d74d6d80bd06b5c4be303663123267b4ac0884cbcae4c914dc47")
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version("5.5.1", sha256="49dc2c2323f6164c4a7e81b799ed690ee73158671205e71501f849391dd2c2d4")
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version("5.5.0", sha256="3ea15e6cc2354017335b659c1635409ddab1414e70573aa4df91fd892e99f98d")
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version("5.4.3", sha256="3aefd581e274f0a103f001f1ffd1009019b297c637e97f4b8c5fc13fa5a1e675")
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version("5.4.1", sha256="e131c1449786fe870322a949e44f974a5963824f683232e653fb570cc65d4e87")
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version("5.3.0", sha256="99f2f36398b370e75d100b4a189d5bc0ac4f5dd66df44d441f88fd32e1421524")
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variant("example", default=True, description="Install the example files")
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variant("infiniband", default=False, description="Enable Infiniband support")
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variant("powercap", default=False, description="Enable powercap interface support")
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variant("rapl", default=False, description="Enable RAPL support")
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variant("lmsensors", default=False, description="Enable lm_sensors support")
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variant("sde", default=False, description="Enable software defined events")
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variant("cuda", default=False, description="Enable CUDA support")
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variant("nvml", default=False, description="Enable NVML support")
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variant("rocm_smi", default=False, description="Enable ROCm SMI support")
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|
||||||
|
variant("shared", default=True, description="Build shared libraries")
|
||||||
|
# PAPI requires building static libraries, so there is no "static" variant
|
||||||
|
variant("static_tools", default=False, description="Statically link the PAPI tools")
|
||||||
|
# The PAPI configure option "--with-shlib-tools" is deprecated
|
||||||
|
# and therefore not implemented here
|
||||||
|
|
||||||
|
depends_on("lm-sensors", when="+lmsensors")
|
||||||
|
depends_on("cuda", when="+cuda")
|
||||||
|
depends_on("cuda", when="+nvml")
|
||||||
|
depends_on("hsa-rocr-dev", when="+rocm")
|
||||||
|
depends_on("rocprofiler-dev", when="+rocm")
|
||||||
|
depends_on("rocm-smi-lib", when="+rocm_smi")
|
||||||
|
|
||||||
|
conflicts("%gcc@8:", when="@5.3.0", msg="Requires GCC version less than 8.0")
|
||||||
|
conflicts("+sde", when="@:5", msg="Software defined events (SDE) added in 6.0.0")
|
||||||
|
conflicts("^cuda", when="@:5", msg="CUDA support for versions < 6.0.0 not implemented")
|
||||||
|
|
||||||
|
# This is the only way to match exactly version 6.0.0 without also
|
||||||
|
# including version 6.0.0.1 due to spack version matching logic
|
||||||
|
conflicts(
|
||||||
|
"@6.0:6.0.0.a", when="+static_tools", msg="Static tools cannot build on version 6.0.0"
|
||||||
|
)
|
||||||
|
|
||||||
|
# Does not build with newer versions of gcc, see
|
||||||
|
# https://bitbucket.org/icl/papi/issues/46/cannot-compile-on-arch-linux
|
||||||
|
patch(
|
||||||
|
"https://bitbucket.org/icl/papi/commits/53de184a162b8a7edff48fed01a15980664e15b1/raw",
|
||||||
|
sha256="64c57b3ad4026255238cc495df6abfacc41de391a0af497c27d0ac819444a1f8",
|
||||||
|
when="@5.4.0:5.6%gcc@8:",
|
||||||
|
)
|
||||||
|
patch("crayftn-fixes.patch", when="@6.0.0:%cce@9:")
|
||||||
|
patch("intel-oneapi-compiler-fixes.patch", when="@6.0.0:%oneapi")
|
||||||
|
|
||||||
|
configure_directory = "src"
|
||||||
|
|
||||||
|
def setup_build_environment(self, env):
|
||||||
|
spec = self.spec
|
||||||
|
if "+lmsensors" in spec and self.version >= Version("6"):
|
||||||
|
env.set("PAPI_LMSENSORS_ROOT", spec["lm-sensors"].prefix)
|
||||||
|
if "^cuda" in spec:
|
||||||
|
env.set("PAPI_CUDA_ROOT", spec["cuda"].prefix)
|
||||||
|
if "+rocm" in spec:
|
||||||
|
env.set("PAPI_ROCM_ROOT", spec["hsa-rocr-dev"].prefix)
|
||||||
|
env.append_flags("CFLAGS", "-I%s/rocprofiler/include" % spec["rocprofiler-dev"].prefix)
|
||||||
|
env.set(
|
||||||
|
"ROCP_METRICS", "%s/rocprofiler/lib/metrics.xml" % spec["rocprofiler-dev"].prefix
|
||||||
|
)
|
||||||
|
env.set("ROCPROFILER_LOG", "1")
|
||||||
|
env.set("HSA_VEN_AMD_AQLPROFILE_LOG", "1")
|
||||||
|
env.set("AQLPROFILE_READ_API", "1")
|
||||||
|
# Setting HSA_TOOLS_LIB=librocprofiler64.so (as recommended) doesn't work
|
||||||
|
# due to a conflict between the spack and system-installed versions.
|
||||||
|
env.set("HSA_TOOLS_LIB", "unset")
|
||||||
|
if "+rocm_smi" in spec:
|
||||||
|
env.append_flags("CFLAGS", "-I%s/rocm_smi" % spec["rocm-smi-lib"].prefix.include)
|
||||||
|
#
|
||||||
|
# Intel OneAPI LLVM cannot compile papi unless the DBG enviroment variable is cleared
|
||||||
|
#
|
||||||
|
if spec.satisfies("%oneapi"):
|
||||||
|
env.set("DBG", "")
|
||||||
|
|
||||||
|
setup_run_environment = setup_build_environment
|
||||||
|
|
||||||
|
@when("@6.0.0:%oneapi")
|
||||||
|
def autoreconf(self, spec, prefix):
|
||||||
|
bash = which("bash")
|
||||||
|
bash("-c", "cd src && autoreconf -ivf")
|
||||||
|
|
||||||
|
def configure_args(self):
|
||||||
|
spec = self.spec
|
||||||
|
# PAPI uses MPI if MPI is present; since we don't require
|
||||||
|
# an MPI package, we ensure that all attempts to use MPI
|
||||||
|
# fail, so that PAPI does not get confused
|
||||||
|
options = ["MPICC=:"]
|
||||||
|
# Build a list of PAPI components
|
||||||
|
components = filter(
|
||||||
|
lambda x: spec.variants[x].value,
|
||||||
|
[
|
||||||
|
"example",
|
||||||
|
"infiniband",
|
||||||
|
"powercap",
|
||||||
|
"rapl",
|
||||||
|
"lmsensors",
|
||||||
|
"sde",
|
||||||
|
"cuda",
|
||||||
|
"nvml",
|
||||||
|
"rocm",
|
||||||
|
"rocm_smi",
|
||||||
|
],
|
||||||
|
)
|
||||||
|
if components:
|
||||||
|
options.append("--with-components=" + " ".join(components))
|
||||||
|
|
||||||
|
build_shared = "yes" if "+shared" in spec else "no"
|
||||||
|
options.append("--with-shared-lib=" + build_shared)
|
||||||
|
|
||||||
|
if "+static_tools" in spec:
|
||||||
|
options.append("--with-static-tools")
|
||||||
|
|
||||||
|
return options
|
||||||
|
|
||||||
|
@run_before("configure")
|
||||||
|
def fortran_check(self):
|
||||||
|
if not self.compiler.fc:
|
||||||
|
msg = "PAPI requires a Fortran compiler to build"
|
||||||
|
raise RuntimeError(msg)
|
||||||
|
|
||||||
|
@run_before("configure")
|
||||||
|
def component_configure(self):
|
||||||
|
configure_script = Executable("./configure")
|
||||||
|
if "+lmsensors" in self.spec and self.version < Version("6"):
|
||||||
|
with working_dir("src/components/lmsensors"):
|
||||||
|
configure_script(
|
||||||
|
"--with-sensors_incdir=%s/sensors"
|
||||||
|
% self.spec["lm-sensors"].headers.directories[0],
|
||||||
|
"--with-sensors_libdir=%s" % self.spec["lm-sensors"].libs.directories[0],
|
||||||
|
)
|
||||||
|
|
||||||
|
@run_before("build")
|
||||||
|
def fix_build(self):
|
||||||
|
# Don't use <malloc.h>
|
||||||
|
for level in [".", "*", "*/*"]:
|
||||||
|
files = glob.iglob(join_path(level, "*.[ch]"))
|
||||||
|
filter_file(r"\<malloc\.h\>", "<stdlib.h>", *files)
|
||||||
|
|
||||||
|
@run_after("install")
|
||||||
|
def fix_darwin_install(self):
|
||||||
|
# The shared library is not installed correctly on Darwin
|
||||||
|
if sys.platform == "darwin":
|
||||||
|
os.rename(
|
||||||
|
join_path(self.prefix.lib, "libpapi.so"),
|
||||||
|
join_path(self.prefix.lib, "libpapi.dylib"),
|
||||||
|
)
|
||||||
|
fs.fix_darwin_install_name(self.prefix.lib)
|
||||||
2
ChEESE_templates/repo/repo.yaml
Normal file
2
ChEESE_templates/repo/repo.yaml
Normal file
|
|
@ -0,0 +1,2 @@
|
||||||
|
repo:
|
||||||
|
namespace: 'cheese'
|
||||||
18
ChEESE_templates/spack.yaml
Normal file
18
ChEESE_templates/spack.yaml
Normal file
|
|
@ -0,0 +1,18 @@
|
||||||
|
spack:
|
||||||
|
concretizer:
|
||||||
|
unify: true
|
||||||
|
repos:
|
||||||
|
- $SPACK_USER_PREFIX/repo
|
||||||
|
modules:
|
||||||
|
default:
|
||||||
|
tcl:
|
||||||
|
projections:
|
||||||
|
all: '{name}/{version}-{compiler.name}'
|
||||||
|
cray-mpich: '{name}/{version}'
|
||||||
|
hash_length: 0
|
||||||
|
packages:
|
||||||
|
cray-mpich:
|
||||||
|
externals:
|
||||||
|
- spec: cray-mpich@8.1.27
|
||||||
|
modules:
|
||||||
|
- cray-mpich/8.1.27
|
||||||
Loading…
Reference in a new issue